Wall clock time and date at job start Tue Mar 31 2020 00:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46858 * 2 1 4 4 C 1.50704 * 109.47166 * 180.02562 * 3 2 1 5 5 N 1.31129 * 126.55305 * 89.70843 * 4 3 2 6 6 C 1.34492 * 105.61461 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.28505 * 180.13053 * 6 5 4 8 8 N 1.46903 * 109.46936 * 270.23323 * 7 6 5 9 9 C 1.46907 * 110.99603 * 190.00202 * 8 7 6 10 10 C 1.50705 * 109.46606 * 168.99208 * 9 8 7 11 11 H 1.07998 * 120.00143 * 354.95653 * 10 9 8 12 12 C 1.37877 * 119.99868 * 174.95914 * 10 9 8 13 13 N 1.31519 * 119.99678 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00133 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46979 * 89.99839 * 14 12 10 16 16 H 1.48493 * 109.47284 * 210.00191 * 14 12 10 17 17 H 1.48502 * 109.47238 * 330.00241 * 14 12 10 18 18 C 1.46896 * 110.99907 * 66.05222 * 8 7 6 19 19 C 1.52995 * 109.47402 * 62.03404 * 18 8 7 20 20 C 1.47198 * 109.46955 * 179.59892 * 19 18 8 21 21 N 6.27799 * 118.30417 * 258.16607 * 2 1 3 22 22 N 1.29948 * 107.42478 * 0.34742 * 6 5 4 23 23 O 1.21294 * 110.25193 * 359.78183 * 22 6 5 24 24 H 1.09005 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 300.00031 * 1 2 3 26 26 H 1.09002 * 109.46928 * 60.00024 * 1 2 3 27 27 H 1.08998 * 109.47083 * 239.99969 * 2 1 3 28 28 H 1.08993 * 109.47006 * 119.99943 * 2 1 3 29 29 H 1.08998 * 109.47299 * 60.00101 * 3 2 1 30 30 H 1.09002 * 109.47332 * 299.99728 * 3 2 1 31 31 H 1.08999 * 109.47223 * 30.23578 * 7 6 5 32 32 H 1.09004 * 109.46703 * 150.23723 * 7 6 5 33 33 H 1.08996 * 109.46982 * 288.98558 * 9 8 7 34 34 H 1.08992 * 109.47291 * 48.99303 * 9 8 7 35 35 H 0.97000 * 119.99222 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47138 * 182.03742 * 18 8 7 37 37 H 1.09000 * 109.46904 * 302.03462 * 18 8 7 38 38 H 1.08993 * 109.47367 * 299.59645 * 19 18 8 39 39 H 1.09001 * 109.46832 * 59.60169 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 7 4.3275 1.4374 -1.0543 6 6 5.5838 1.4405 -0.5742 7 6 6.8506 1.4395 -1.3906 8 7 7.2608 0.0542 -1.6563 9 6 8.6077 0.0070 -2.2410 10 6 9.1019 -1.4167 -2.2494 11 1 8.5138 -2.1953 -1.7864 12 6 10.3049 -1.7253 -2.8482 13 7 11.0208 -0.7772 -3.4125 14 14 10.9179 -3.4898 -2.8581 15 1 10.4190 -4.1803 -4.0744 16 1 12.4028 -3.4979 -2.8581 17 1 10.4191 -4.1939 -1.6495 18 6 6.2875 -0.6264 -2.5208 19 6 6.2181 0.0880 -3.8719 20 6 5.2499 -0.5998 -4.7415 21 7 4.5067 -1.1335 -5.4099 22 7 5.5047 1.4397 0.7228 23 8 4.3433 1.4408 1.0727 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.6744 1.9539 -2.3353 32 1 7.6386 1.9523 -0.8391 33 1 8.5738 0.3858 -3.2625 34 1 9.2833 0.6226 -1.6473 35 1 11.8670 -0.9944 -3.8341 36 1 6.5967 -1.6606 -2.6721 37 1 5.3054 -0.6063 -2.0483 38 1 5.9020 1.1202 -3.7214 39 1 7.2019 0.0740 -4.3412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132855411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:19 Heat of formation + Delta-G solvation = 68.975469 kcal Electronic energy + Delta-G solvation = -21402.488513 eV Core-core repulsion = 18154.728013 eV Total energy + Delta-G solvation = -3247.760501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.56214 -39.59012 -37.53393 -36.96863 -36.10524 -34.66360 -33.20823 -31.86518 -29.89098 -28.55777 -27.37215 -25.53699 -24.56715 -23.24467 -22.26182 -21.18270 -19.12509 -18.97306 -18.31538 -18.19181 -16.97793 -16.46774 -16.36010 -16.02653 -15.61874 -15.48788 -15.21899 -14.65763 -14.31516 -14.17062 -13.76439 -13.61733 -13.47513 -13.18937 -13.05401 -12.91612 -12.85522 -12.75671 -12.59616 -12.51973 -12.38609 -12.09490 -11.98301 -11.97474 -11.63188 -11.58517 -11.33296 -10.81356 -10.55395 -9.10624 -8.16391 -6.22991 0.26139 1.21745 1.42684 1.45133 1.54353 1.74464 1.79646 1.97974 2.42684 2.66980 2.96571 3.11988 3.18475 3.45171 3.94392 4.02982 4.08716 4.10578 4.17635 4.30245 4.43627 4.49162 4.62978 4.70557 4.75647 4.80609 4.86045 4.94223 5.05713 5.10461 5.26201 5.30237 5.30824 5.33849 5.47275 5.68866 6.05738 6.19570 6.50255 6.57025 6.90812 7.29140 7.45575 8.93319 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.004435 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.696468 B = 6311.675977 C = 6918.759501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.021 4.021 4 C 0.182 3.818 5 N -0.493 5.493 6 C 0.179 3.821 7 C 0.135 3.865 8 N -0.533 5.533 9 C 0.202 3.798 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.014 3.986 13 N -0.925 5.925 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.081 3.919 19 C -0.057 4.057 20 C 0.246 3.754 21 N -0.489 5.489 22 N -0.397 5.397 23 O 0.077 5.923 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.007 0.993 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.492 7.059 6.839 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C -0.060 4.060 4 C -0.039 4.039 5 N -0.227 5.227 6 C -0.094 4.094 7 C 0.005 3.995 8 N -0.257 5.257 9 C 0.077 3.923 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.185 4.185 13 N -0.565 5.565 14 Si 0.778 3.222 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.049 4.049 19 C -0.099 4.099 20 C -0.071 4.071 21 N -0.167 5.167 22 N -0.104 5.104 23 O 0.017 5.983 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.579 6.051 6.299 20.530 hybrid contribution 1.120 -0.369 -0.575 1.312 sum -17.458 5.683 5.724 19.231 Atomic orbital electron populations 1.21719 0.92811 1.02615 1.03203 1.21522 0.97968 0.94162 1.02395 1.20590 0.77194 1.00243 1.07957 1.29655 0.99833 0.94331 0.80037 1.71881 1.00031 1.21052 1.29722 1.25775 0.95330 1.00154 0.88182 1.20400 0.89308 0.92013 0.97734 1.62201 1.03763 1.13128 1.46638 1.19567 0.83250 0.96484 0.93027 1.21370 1.04691 0.94464 1.35246 0.92569 1.25614 0.96946 1.00721 0.95185 1.70021 1.14342 1.33813 1.38332 0.85649 0.77359 0.80771 0.78459 1.20292 1.20942 1.19595 1.21885 0.95642 0.98685 0.88679 1.20058 0.95583 1.00286 0.93965 1.29107 0.92871 0.92451 0.92653 1.81012 1.12742 1.11035 1.11912 1.74644 0.98035 1.21323 1.16442 1.85264 1.11175 1.65645 1.36208 0.92375 0.90685 0.91804 0.93026 0.91474 0.85024 0.86006 0.89716 0.88504 0.97500 0.96904 0.92738 0.91093 0.91114 0.85561 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 3 C -0.02 -0.25 5.84 29.85 0.17 -0.07 16 4 C 0.18 3.98 7.77 88.38 0.69 4.67 16 5 N -0.49 -13.48 10.78 -303.19 -3.27 -16.75 16 6 C 0.18 5.59 6.83 138.46 0.95 6.54 16 7 C 0.13 4.33 5.38 85.56 0.46 4.79 16 8 N -0.53 -20.55 4.69 -905.36 -4.24 -24.79 16 9 C 0.20 9.31 4.53 85.56 0.39 9.70 16 10 C -0.52 -27.12 8.40 25.60 0.21 -26.91 16 11 H 0.06 2.97 7.38 -2.91 -0.02 2.95 16 12 C 0.01 0.77 5.46 84.65 0.46 1.23 16 13 N -0.92 -51.68 13.29 21.45 0.28 -51.39 16 14 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.08 2.84 4.94 86.30 0.43 3.26 16 19 C -0.06 -1.74 5.05 28.79 0.15 -1.60 16 20 C 0.25 8.07 15.42 89.47 1.38 9.45 16 21 N -0.49 -17.81 18.52 19.97 0.37 -17.44 16 22 N -0.40 -12.81 12.16 -60.33 -0.73 -13.55 16 23 O 0.08 2.02 11.31 74.80 0.85 2.86 16 24 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 2.35 6.07 -2.39 -0.01 2.34 16 32 H 0.10 3.14 7.92 -2.39 -0.02 3.13 16 33 H 0.01 0.34 6.01 -2.39 -0.01 0.32 16 34 H 0.01 0.64 7.91 -2.39 -0.02 0.63 16 35 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 36 H 0.07 2.79 6.98 -2.39 -0.02 2.77 16 37 H 0.07 2.38 6.62 -2.39 -0.02 2.36 16 38 H 0.13 3.23 6.34 -2.39 -0.02 3.21 16 39 H 0.11 3.74 6.28 -2.39 -0.01 3.73 16 Total: -1.00 -64.54 333.85 2.52 -62.02 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.06 Total: 4.92 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.18 Total: 9.13 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -7.59 Total: -123.91 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.86 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.54 2.52 -62.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132855411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.995 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds