Wall clock time and date at job start Tue Mar 31 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47525 * 2 1 4 4 N 1.31794 * 119.04024 * 269.73247 * 3 2 1 5 5 C 1.32272 * 120.88799 * 179.71087 * 4 3 2 6 6 C 1.39224 * 119.01947 * 0.55118 * 5 4 3 7 7 N 1.40000 * 120.87569 * 179.70581 * 6 5 4 8 8 C 1.34783 * 119.99491 * 32.41312 * 7 6 5 9 9 O 1.21587 * 119.99920 * 5.30102 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.30392 * 8 7 6 11 11 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46962 * 324.99522 * 11 10 8 13 13 C 1.50700 * 109.46933 * 204.99727 * 11 10 8 14 14 H 1.08005 * 119.99950 * 359.97438 * 13 11 10 15 15 C 1.37870 * 120.00050 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00229 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46816 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46722 * 119.99980 * 17 15 13 20 20 H 1.48492 * 109.47452 * 240.00375 * 17 15 13 21 21 C 1.52995 * 109.47144 * 84.99636 * 11 10 8 22 22 C 1.53005 * 109.47212 * 294.99822 * 21 11 10 23 23 C 1.39229 * 118.26034 * 359.72537 * 6 5 4 24 24 N 1.31798 * 119.03857 * 89.99966 * 3 2 1 25 25 H 1.08999 * 109.46501 * 59.99430 * 1 2 3 26 26 H 1.08996 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46711 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.46967 * 240.00033 * 2 1 3 29 29 H 1.08998 * 109.46939 * 120.00871 * 2 1 3 30 30 H 1.08002 * 120.49411 * 180.29785 * 5 4 3 31 31 H 0.96996 * 120.00258 * 212.41492 * 7 6 5 32 32 H 0.97000 * 120.00014 * 359.97438 * 10 8 7 33 33 H 0.96994 * 120.00432 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47218 * 55.00287 * 21 11 10 35 35 H 1.09006 * 109.46638 * 175.00161 * 21 11 10 36 36 H 1.08997 * 109.47093 * 59.99974 * 22 21 11 37 37 H 1.09000 * 109.46831 * 180.02562 * 22 21 11 38 38 H 1.09007 * 109.47064 * 300.00235 * 22 21 11 39 39 H 1.08001 * 120.49203 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2508 2.0221 -1.1522 5 6 2.6864 3.2703 -1.1949 6 6 2.9246 3.9437 0.0001 7 7 3.3917 5.2635 0.0003 8 6 3.0269 6.1075 -0.9852 9 8 2.2171 5.7534 -1.8202 10 7 3.5598 7.3440 -1.0450 11 6 3.1628 8.2617 -2.1158 12 1 2.9860 7.6970 -3.0312 13 6 4.2617 9.2662 -2.3496 14 1 5.1652 9.2253 -1.7593 15 6 4.1136 10.2372 -3.3171 16 7 3.0133 10.2873 -4.0356 17 14 5.4754 11.4828 -3.6064 18 1 6.5994 11.2127 -2.6742 19 1 5.9571 11.3731 -5.0069 20 1 4.9526 12.8521 -3.3685 21 6 1.8810 8.9928 -1.7119 22 6 0.7346 7.9862 -1.5958 23 6 2.6864 3.2702 1.1951 24 7 2.2457 2.0238 1.1523 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 2.8586 3.7585 -2.1427 31 1 3.9779 5.5704 0.7095 32 1 4.2056 7.6266 -0.3786 33 1 2.9089 10.9706 -4.7160 34 1 2.0309 9.4851 -0.7510 35 1 1.6346 9.7386 -2.4677 36 1 0.9811 7.2404 -0.8401 37 1 -0.1787 8.5072 -1.3085 38 1 0.5847 7.4939 -2.5568 39 1 2.8594 3.7580 2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157769460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:02 Heat of formation + Delta-G solvation = 9.251900 kcal Electronic energy + Delta-G solvation = -21409.785037 eV Core-core repulsion = 18159.434728 eV Total energy + Delta-G solvation = -3250.350309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24564 -39.58055 -36.04706 -34.76832 -33.63997 -33.51077 -32.45951 -31.01403 -29.18208 -26.96399 -24.85495 -24.60224 -23.12122 -22.00632 -20.90331 -19.68424 -18.73356 -17.52103 -17.11463 -16.64490 -16.05201 -15.27171 -15.05053 -14.67230 -14.27779 -14.14347 -13.84342 -13.48062 -13.43077 -12.75012 -12.65342 -12.32220 -11.93517 -11.66689 -11.34521 -11.21218 -11.19620 -11.02477 -10.94250 -10.75853 -10.69743 -10.38850 -10.26567 -9.74494 -9.59071 -9.16208 -9.11534 -8.58964 -8.31203 -7.90786 -6.19696 -4.29561 0.93192 1.14291 2.90376 3.19148 3.27737 3.29764 3.52566 3.88701 3.98592 4.22844 4.25584 4.52800 4.77747 4.96698 5.07976 5.12455 5.16221 5.21251 5.52811 5.73226 5.80273 6.00843 6.05764 6.20649 6.33680 6.39944 6.57834 6.65392 6.83980 6.99917 7.07446 7.22252 7.26327 7.33429 7.56796 7.75530 7.85277 8.09961 8.16242 8.59808 8.72137 9.06430 9.38214 10.85669 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.003516 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.775705 B = 7962.785183 C = 8158.356729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C 0.280 3.720 4 N -0.496 5.496 5 C 0.149 3.851 6 C 0.080 3.920 7 N -0.686 5.686 8 C 0.691 3.309 9 O -0.574 6.574 10 N -0.713 5.713 11 C 0.285 3.715 12 H 0.052 0.948 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.880 5.880 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.129 4.129 22 C -0.136 4.136 23 C 0.110 3.890 24 N -0.499 5.499 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.182 0.818 31 H 0.406 0.594 32 H 0.387 0.613 33 H 0.265 0.735 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 -13.074 10.128 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C 0.012 3.988 4 N -0.209 5.209 5 C -0.021 4.021 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.392 3.608 9 O -0.452 6.452 10 N -0.363 5.363 11 C 0.184 3.816 12 H 0.070 0.930 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.168 4.168 22 C -0.193 4.193 23 C -0.059 4.059 24 N -0.212 5.212 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.199 0.801 31 H 0.242 0.758 32 H 0.220 0.780 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.198 -14.073 9.123 16.814 hybrid contribution 1.591 2.147 0.567 2.732 sum 0.393 -11.926 9.690 15.371 Atomic orbital electron populations 1.21697 0.93893 1.02140 1.02513 1.20242 0.96561 0.88251 1.03763 1.23065 0.94486 0.97590 0.83623 1.68286 1.12626 1.09902 1.30116 1.23551 0.91485 0.88256 0.98769 1.19354 1.00198 0.86140 0.96490 1.42749 1.52571 1.08610 1.29525 1.16147 0.81668 0.81465 0.81561 1.90922 1.36505 1.76578 1.41153 1.45872 1.45225 1.12201 1.33046 1.18788 0.92435 0.86113 0.84284 0.93042 1.21228 1.02268 1.13710 1.20207 0.91989 1.24876 0.95961 0.97444 0.95343 1.69896 1.25470 1.34328 1.22061 0.86384 0.81612 0.80857 0.78181 1.19759 1.20836 1.20840 1.21968 0.94921 0.99061 1.00846 1.21820 0.97545 0.98784 1.01173 1.22973 0.94964 0.90926 0.97057 1.68120 1.13061 1.09481 1.30535 0.92244 0.91714 0.92432 0.89443 0.89583 0.80110 0.75822 0.78024 0.92498 0.95012 0.88136 0.94472 0.95885 0.93076 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.90 37.16 0.37 -1.00 16 2 C -0.05 -0.51 6.37 -27.88 -0.18 -0.68 16 3 C 0.28 3.88 6.89 -157.20 -1.08 2.79 16 4 N -0.50 -7.74 10.32 -10.58 -0.11 -7.85 16 5 C 0.15 2.40 9.94 -17.00 -0.17 2.23 16 6 C 0.08 1.14 6.34 -83.39 -0.53 0.61 16 7 N -0.69 -9.35 5.38 -14.03 -0.08 -9.42 16 8 C 0.69 12.63 6.90 -86.91 -0.60 12.03 16 9 O -0.57 -12.52 11.18 5.29 0.06 -12.46 16 10 N -0.71 -13.51 5.03 -59.81 -0.30 -13.81 16 11 C 0.29 6.79 2.24 -69.08 -0.15 6.63 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 13 C -0.54 -13.47 8.73 -34.44 -0.30 -13.77 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 16 N -0.88 -23.90 11.29 55.43 0.63 -23.27 16 17 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 21 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 22 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 23 C 0.11 1.36 11.26 -17.00 -0.19 1.17 16 24 N -0.50 -6.74 10.32 -10.58 -0.11 -6.85 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.18 3.19 6.46 -52.49 -0.34 2.85 16 31 H 0.41 4.00 8.84 -40.82 -0.36 3.64 16 32 H 0.39 6.20 8.56 -40.82 -0.35 5.85 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 36 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 39 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -29.98 324.18 -8.18 -38.16 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.38 Total: 9.82 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.76 Total: 5.86 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.03 Total: -61.20 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.06 Total: -12.46 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.98 -8.18 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157769460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.410 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds