Wall clock time and date at job start Tue Mar 31 2020 00:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47525 * 2 1 4 4 N 1.31794 * 119.04024 * 269.73247 * 3 2 1 5 5 C 1.32272 * 120.88799 * 179.71087 * 4 3 2 6 6 C 1.39224 * 119.01947 * 0.55118 * 5 4 3 7 7 N 1.40000 * 120.87569 * 179.70581 * 6 5 4 8 8 C 1.34783 * 119.99491 * 32.41312 * 7 6 5 9 9 O 1.21587 * 119.99920 * 5.30102 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.30392 * 8 7 6 11 11 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46962 * 324.99522 * 11 10 8 13 13 C 1.50700 * 109.46933 * 204.99727 * 11 10 8 14 14 H 1.08005 * 119.99950 * 359.97438 * 13 11 10 15 15 C 1.37870 * 120.00050 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00229 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46816 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46722 * 119.99980 * 17 15 13 20 20 H 1.48492 * 109.47452 * 240.00375 * 17 15 13 21 21 C 1.52995 * 109.47144 * 84.99636 * 11 10 8 22 22 C 1.53005 * 109.47212 * 294.99822 * 21 11 10 23 23 C 1.39229 * 118.26034 * 359.72537 * 6 5 4 24 24 N 1.31798 * 119.03857 * 89.99966 * 3 2 1 25 25 H 1.08999 * 109.46501 * 59.99430 * 1 2 3 26 26 H 1.08996 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46711 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.46967 * 240.00033 * 2 1 3 29 29 H 1.08998 * 109.46939 * 120.00871 * 2 1 3 30 30 H 1.08002 * 120.49411 * 180.29785 * 5 4 3 31 31 H 0.96996 * 120.00258 * 212.41492 * 7 6 5 32 32 H 0.97000 * 120.00014 * 359.97438 * 10 8 7 33 33 H 0.96994 * 120.00432 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47218 * 55.00287 * 21 11 10 35 35 H 1.09006 * 109.46638 * 175.00161 * 21 11 10 36 36 H 1.08997 * 109.47093 * 59.99974 * 22 21 11 37 37 H 1.09000 * 109.46831 * 180.02562 * 22 21 11 38 38 H 1.09007 * 109.47064 * 300.00235 * 22 21 11 39 39 H 1.08001 * 120.49203 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2508 2.0221 -1.1522 5 6 2.6864 3.2703 -1.1949 6 6 2.9246 3.9437 0.0001 7 7 3.3917 5.2635 0.0003 8 6 3.0269 6.1075 -0.9852 9 8 2.2171 5.7534 -1.8202 10 7 3.5598 7.3440 -1.0450 11 6 3.1628 8.2617 -2.1158 12 1 2.9860 7.6970 -3.0312 13 6 4.2617 9.2662 -2.3496 14 1 5.1652 9.2253 -1.7593 15 6 4.1136 10.2372 -3.3171 16 7 3.0133 10.2873 -4.0356 17 14 5.4754 11.4828 -3.6064 18 1 6.5994 11.2127 -2.6742 19 1 5.9571 11.3731 -5.0069 20 1 4.9526 12.8521 -3.3685 21 6 1.8810 8.9928 -1.7119 22 6 0.7346 7.9862 -1.5958 23 6 2.6864 3.2702 1.1951 24 7 2.2457 2.0238 1.1523 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 2.8586 3.7585 -2.1427 31 1 3.9779 5.5704 0.7095 32 1 4.2056 7.6266 -0.3786 33 1 2.9089 10.9706 -4.7160 34 1 2.0309 9.4851 -0.7510 35 1 1.6346 9.7386 -2.4677 36 1 0.9811 7.2404 -0.8401 37 1 -0.1787 8.5072 -1.3085 38 1 0.5847 7.4939 -2.5568 39 1 2.8594 3.7580 2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157769460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:01 Heat of formation + Delta-G solvation = -11.582044 kcal Electronic energy + Delta-G solvation = -21410.688464 eV Core-core repulsion = 18159.434728 eV Total energy + Delta-G solvation = -3251.253737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40142 -40.99848 -37.56876 -36.24361 -34.77597 -34.63381 -34.15517 -32.72960 -30.38648 -28.76502 -25.99297 -25.70189 -24.89195 -23.12349 -22.30023 -21.43242 -20.16625 -18.91261 -18.32938 -17.79248 -17.69289 -16.93948 -16.47397 -16.05440 -15.83663 -15.17185 -15.01887 -14.75371 -14.57662 -14.46918 -14.18453 -13.57474 -13.33575 -13.19228 -12.89568 -12.83297 -12.71208 -12.24773 -12.12645 -12.07488 -12.00884 -11.94860 -11.85293 -11.57255 -11.20767 -11.02920 -10.54505 -10.28767 -9.79875 -9.29297 -8.15846 -6.32601 -0.17420 0.02477 1.45143 1.46255 1.56471 1.62725 2.12309 2.42226 2.74403 3.01720 3.14355 3.17741 3.30662 3.57492 3.88912 4.12435 4.32038 4.41357 4.49579 4.56828 4.64753 4.75346 4.76987 5.02345 5.03041 5.09739 5.15074 5.23945 5.33196 5.43213 5.51150 5.52343 5.60727 5.70726 5.84928 5.95832 6.16145 6.19205 6.75554 7.06539 7.18168 7.35399 7.63478 8.89712 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.003516 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.775705 B = 7962.785183 C = 8158.356729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.276 3.724 4 N -0.517 5.517 5 C 0.128 3.872 6 C 0.068 3.932 7 N -0.662 5.662 8 C 0.693 3.307 9 O -0.613 6.613 10 N -0.708 5.708 11 C 0.296 3.704 12 H 0.002 0.998 13 C -0.545 4.545 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.287 1.287 20 H -0.280 1.280 21 C -0.122 4.122 22 C -0.121 4.121 23 C 0.132 3.868 24 N -0.503 5.503 25 H 0.040 0.960 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.428 0.572 32 H 0.405 0.595 33 H 0.264 0.736 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -13.629 12.773 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C 0.008 3.992 4 N -0.232 5.232 5 C -0.041 4.041 6 C -0.033 4.033 7 N -0.313 5.313 8 C 0.393 3.607 9 O -0.492 6.492 10 N -0.360 5.360 11 C 0.192 3.808 12 H 0.020 0.980 13 C -0.583 4.583 14 H 0.092 0.908 15 C -0.184 4.184 16 N -0.553 5.553 17 Si 0.794 3.206 18 H -0.183 1.183 19 H -0.213 1.213 20 H -0.206 1.206 21 C -0.161 4.161 22 C -0.178 4.178 23 C -0.038 4.038 24 N -0.216 5.216 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.173 0.827 31 H 0.268 0.732 32 H 0.240 0.760 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.245 -14.659 11.827 18.837 hybrid contribution 1.275 2.195 -0.225 2.548 sum 1.030 -12.464 11.602 17.059 Atomic orbital electron populations 1.21670 0.93208 1.03556 1.01316 1.20420 0.97003 0.86376 1.05055 1.23774 0.93376 0.98828 0.83222 1.68278 1.13598 1.09898 1.31382 1.23300 0.92894 0.89041 0.98838 1.19367 1.01282 0.86055 0.96611 1.42279 1.52384 1.07811 1.28815 1.16182 0.81141 0.81463 0.81872 1.90915 1.38192 1.77246 1.42875 1.45423 1.45918 1.12127 1.32578 1.18307 0.92676 0.85932 0.83863 0.98018 1.21580 1.02873 1.13658 1.20212 0.90786 1.25730 0.98026 0.99429 0.95209 1.70048 1.27393 1.35118 1.22692 0.85344 0.79100 0.78325 0.77824 1.18348 1.21282 1.20610 1.21812 0.95285 0.98672 1.00304 1.21647 0.97898 0.98377 0.99891 1.23615 0.92279 0.90216 0.97738 1.68274 1.13355 1.09892 1.30097 0.94046 0.89031 0.92940 0.88783 0.87623 0.82706 0.73226 0.75994 0.92625 0.93818 0.90968 0.93980 0.93929 0.95664 0.77366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.90 71.98 0.71 -1.70 16 2 C -0.05 -0.93 6.37 29.85 0.19 -0.74 16 3 C 0.28 7.27 6.89 138.75 0.96 8.23 16 4 N -0.52 -16.26 10.32 -187.40 -1.93 -18.20 16 5 C 0.13 4.20 9.94 84.86 0.84 5.05 16 6 C 0.07 1.86 6.34 38.31 0.24 2.10 16 7 N -0.66 -16.99 5.38 -316.57 -1.70 -18.69 16 8 C 0.69 25.23 6.90 179.05 1.24 26.47 16 9 O -0.61 -27.61 11.18 -3.99 -0.04 -27.66 16 10 N -0.71 -26.54 5.03 -461.40 -2.32 -28.85 16 11 C 0.30 14.35 2.24 44.24 0.10 14.45 16 12 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 13 C -0.54 -27.38 8.73 25.60 0.22 -27.15 16 14 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 15 C 0.02 0.85 5.29 84.65 0.45 1.30 16 16 N -0.91 -50.91 11.29 21.44 0.24 -50.67 16 17 Si 0.97 40.78 29.54 68.60 2.03 42.80 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 C -0.12 -5.75 5.45 30.59 0.17 -5.59 16 22 C -0.12 -5.33 8.51 71.98 0.61 -4.72 16 23 C 0.13 2.86 11.26 84.87 0.96 3.82 16 24 N -0.50 -12.36 10.32 -187.40 -1.93 -14.30 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.16 5.86 6.46 -2.91 -0.02 5.84 16 31 H 0.43 7.16 8.84 -92.71 -0.82 6.34 16 32 H 0.40 12.25 8.56 -92.71 -0.79 11.45 16 33 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 3.87 5.95 -2.38 -0.01 3.85 16 36 H 0.04 1.79 5.64 -2.39 -0.01 1.77 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.02 1.20 7.84 -2.38 -0.02 1.18 16 39 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.10 324.18 0.49 -66.60 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.53 Total: 27.45 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.69 Total: 21.51 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -7.65 Total: -130.71 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.04 Total: -27.66 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -67.10 0.49 -66.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157769460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.023 kcal (2) G-P(sol) polarization free energy of solvation -67.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds