Wall clock time and date at job start Tue Mar 31 2020 00:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46715 * 2 1 4 4 N 1.31791 * 119.03651 * 90.00119 * 3 2 1 5 5 C 1.32275 * 120.88901 * 179.97438 * 4 3 2 6 6 C 1.39226 * 119.01600 * 359.97438 * 5 4 3 7 7 N 1.40003 * 120.86781 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99782 * 147.71955 * 7 6 5 9 9 O 1.21586 * 119.99822 * 354.69868 * 8 7 6 10 10 N 1.34776 * 119.99682 * 174.70624 * 8 7 6 11 11 C 1.46501 * 119.99938 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46915 * 34.99818 * 11 10 8 13 13 C 1.50701 * 109.47285 * 154.99660 * 11 10 8 14 14 H 1.08002 * 119.99857 * 0.02562 * 13 11 10 15 15 C 1.37870 * 119.99890 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00225 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99756 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46972 * 60.00603 * 17 15 13 19 19 H 1.48505 * 109.47069 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47305 * 300.00169 * 17 15 13 21 21 C 1.53001 * 109.47134 * 274.99887 * 11 10 8 22 22 C 1.53000 * 109.47078 * 64.99797 * 21 11 10 23 23 C 1.39229 * 118.26192 * 0.27149 * 6 5 4 24 24 N 1.31798 * 119.03823 * 270.02064 * 3 2 1 25 25 H 1.08998 * 109.47677 * 299.99715 * 1 2 3 26 26 H 1.08998 * 109.47278 * 60.00273 * 1 2 3 27 27 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47677 * 240.00285 * 2 1 3 29 29 H 1.08998 * 109.47278 * 119.99727 * 2 1 3 30 30 H 1.08005 * 120.49077 * 179.97438 * 5 4 3 31 31 H 0.96997 * 120.00132 * 327.71440 * 7 6 5 32 32 H 0.97001 * 120.00076 * 0.26577 * 10 8 7 33 33 H 0.97002 * 120.00082 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47195 * 184.99757 * 21 11 10 35 35 H 1.08994 * 109.47052 * 304.99681 * 21 11 10 36 36 H 1.08997 * 109.47016 * 179.97438 * 22 21 11 37 37 H 1.08999 * 109.47075 * 300.00033 * 22 21 11 38 38 H 1.09006 * 109.47340 * 60.00416 * 22 21 11 39 39 H 1.07998 * 120.48980 * 179.69889 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2454 2.0240 1.1523 5 6 2.6865 3.2703 1.1950 6 6 2.9256 3.9434 0.0000 7 7 3.3932 5.2631 0.0000 8 6 4.2062 5.6899 -0.9866 9 8 4.6112 4.9055 -1.8226 10 7 4.5704 6.9861 -1.0462 11 6 5.4546 7.4500 -2.1182 12 1 5.2351 6.9004 -3.0336 13 6 5.2326 8.9223 -2.3508 14 1 4.5058 9.4589 -1.7590 15 6 5.9572 9.5842 -3.3191 16 7 6.8418 8.9307 -4.0402 17 14 5.6814 11.4091 -3.6079 18 1 5.9807 12.1583 -2.3612 19 1 6.5769 11.8790 -4.6954 20 1 4.2672 11.6405 -3.9972 21 6 6.9116 7.2111 -1.7169 22 6 7.1689 5.7073 -1.6021 23 6 2.6825 3.2717 -1.1951 24 7 2.2450 2.0242 -1.1523 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8586 3.7585 2.1429 31 1 3.1320 5.8702 0.7100 32 1 4.2505 7.6111 -0.3769 33 1 7.3514 9.3963 -4.7217 34 1 7.5712 7.6359 -2.4735 35 1 7.1065 7.6874 -0.7561 36 1 8.2070 5.5371 -1.3166 37 1 6.5093 5.2825 -0.8455 38 1 6.9740 5.2309 -2.5630 39 1 2.8510 3.7612 -2.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157769574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:05 Heat of formation + Delta-G solvation = 9.304306 kcal Electronic energy + Delta-G solvation = -21379.380746 eV Core-core repulsion = 18129.032710 eV Total energy + Delta-G solvation = -3250.348037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24548 -39.58031 -36.04733 -34.76892 -33.64179 -33.51820 -32.45937 -31.01414 -29.18733 -26.96235 -24.85745 -24.60715 -23.11928 -22.01472 -20.89917 -19.68414 -18.73180 -17.52057 -17.10518 -16.68480 -16.03051 -15.20968 -15.03931 -14.77429 -14.26714 -14.15777 -13.82003 -13.49475 -13.41430 -12.74230 -12.70387 -12.30377 -11.95978 -11.65644 -11.33425 -11.22135 -11.21020 -11.05987 -10.91678 -10.76257 -10.68871 -10.40657 -10.25945 -9.74282 -9.59292 -9.16613 -9.12581 -8.58193 -8.31180 -7.90740 -6.19181 -4.29289 0.93240 1.14285 2.90387 3.21084 3.27231 3.28230 3.52810 3.88298 3.98345 4.23053 4.25767 4.52796 4.77744 4.96239 5.06656 5.12517 5.14519 5.20044 5.51597 5.72265 5.78757 5.98805 6.03185 6.20271 6.33803 6.40059 6.57981 6.65357 6.84030 7.00025 7.07483 7.22307 7.26375 7.33560 7.56564 7.75754 7.85453 8.10164 8.16252 8.59774 8.72074 9.06487 9.38371 10.86105 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037295 B = 0.003462 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.589452 B = 8086.601438 C = 8230.926745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.281 3.719 4 N -0.498 5.498 5 C 0.110 3.890 6 C 0.080 3.920 7 N -0.686 5.686 8 C 0.691 3.309 9 O -0.574 6.574 10 N -0.713 5.713 11 C 0.286 3.714 12 H 0.052 0.948 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.129 4.129 22 C -0.136 4.136 23 C 0.149 3.851 24 N -0.496 5.496 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.406 0.594 32 H 0.387 0.613 33 H 0.266 0.734 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.022 0.978 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -9.887 10.122 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C 0.013 3.987 4 N -0.212 5.212 5 C -0.059 4.059 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.392 3.608 9 O -0.452 6.452 10 N -0.363 5.363 11 C 0.184 3.816 12 H 0.070 0.930 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.168 4.168 22 C -0.193 4.193 23 C -0.021 4.021 24 N -0.209 5.209 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.184 0.816 31 H 0.242 0.758 32 H 0.220 0.780 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.771 -11.380 9.108 17.012 hybrid contribution 0.115 2.669 0.587 2.735 sum -8.656 -8.711 9.694 15.646 Atomic orbital electron populations 1.21689 0.93930 1.02157 1.02333 1.20247 0.96469 0.88305 1.03883 1.23061 0.94466 0.97599 0.83623 1.68122 1.13324 1.09206 1.30535 1.22976 0.96006 0.89885 0.97058 1.19354 0.99167 0.87154 0.96492 1.42750 1.51316 1.09975 1.29415 1.16145 0.78886 0.84241 0.81572 1.90923 1.59059 1.54061 1.41109 1.45869 1.52072 1.05591 1.32808 1.18778 0.84529 0.93988 0.84256 0.93040 1.21155 1.22914 0.93256 1.20247 0.92090 1.24870 0.94689 0.98686 0.95323 1.69877 1.23741 1.36280 1.21876 0.86495 0.78216 0.84374 0.77934 1.20158 1.21080 1.20161 1.21969 1.00686 0.93293 1.00852 1.21819 0.97726 0.98601 1.01177 1.23547 0.90100 0.89646 0.98760 1.68282 1.12799 1.09718 1.30125 0.92480 0.92324 0.91724 0.89399 0.89557 0.81605 0.75826 0.78032 0.92378 0.88148 0.95015 0.95882 0.94479 0.93071 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.51 6.37 -27.88 -0.18 -0.69 16 3 C 0.28 3.88 6.89 -157.19 -1.08 2.80 16 4 N -0.50 -6.74 10.32 -10.58 -0.11 -6.85 16 5 C 0.11 1.36 11.26 -16.99 -0.19 1.17 16 6 C 0.08 1.14 6.34 -83.39 -0.53 0.62 16 7 N -0.69 -9.35 5.38 -14.03 -0.08 -9.42 16 8 C 0.69 12.64 6.90 -86.92 -0.60 12.04 16 9 O -0.57 -12.54 11.19 5.29 0.06 -12.48 16 10 N -0.71 -13.52 5.02 -59.81 -0.30 -13.82 16 11 C 0.29 6.81 2.24 -69.08 -0.15 6.65 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 16 N -0.88 -23.94 11.30 55.43 0.63 -23.31 16 17 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 22 C -0.14 -2.97 8.51 37.16 0.32 -2.66 16 23 C 0.15 2.41 9.94 -17.00 -0.17 2.24 16 24 N -0.50 -7.75 10.32 -10.58 -0.11 -7.85 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.41 4.00 8.84 -40.82 -0.36 3.64 16 32 H 0.39 6.19 8.56 -40.82 -0.35 5.84 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 38 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 39 H 0.18 3.18 6.48 -52.49 -0.34 2.84 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -29.98 324.20 -8.18 -38.16 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.38 Total: 9.78 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.76 Total: 5.96 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.03 Total: -61.25 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.98 -8.18 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157769574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.467 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds