Wall clock time and date at job start Tue Mar 31 2020 00:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46715 * 2 1 4 4 N 1.31791 * 119.03651 * 90.00119 * 3 2 1 5 5 C 1.32275 * 120.88901 * 179.97438 * 4 3 2 6 6 C 1.39226 * 119.01600 * 359.97438 * 5 4 3 7 7 N 1.40003 * 120.86781 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99782 * 147.71955 * 7 6 5 9 9 O 1.21586 * 119.99822 * 354.69868 * 8 7 6 10 10 N 1.34776 * 119.99682 * 174.70624 * 8 7 6 11 11 C 1.46501 * 119.99938 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46915 * 34.99818 * 11 10 8 13 13 C 1.50701 * 109.47285 * 154.99660 * 11 10 8 14 14 H 1.08002 * 119.99857 * 0.02562 * 13 11 10 15 15 C 1.37870 * 119.99890 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00225 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99756 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46972 * 60.00603 * 17 15 13 19 19 H 1.48505 * 109.47069 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47305 * 300.00169 * 17 15 13 21 21 C 1.53001 * 109.47134 * 274.99887 * 11 10 8 22 22 C 1.53000 * 109.47078 * 64.99797 * 21 11 10 23 23 C 1.39229 * 118.26192 * 0.27149 * 6 5 4 24 24 N 1.31798 * 119.03823 * 270.02064 * 3 2 1 25 25 H 1.08998 * 109.47677 * 299.99715 * 1 2 3 26 26 H 1.08998 * 109.47278 * 60.00273 * 1 2 3 27 27 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47677 * 240.00285 * 2 1 3 29 29 H 1.08998 * 109.47278 * 119.99727 * 2 1 3 30 30 H 1.08005 * 120.49077 * 179.97438 * 5 4 3 31 31 H 0.96997 * 120.00132 * 327.71440 * 7 6 5 32 32 H 0.97001 * 120.00076 * 0.26577 * 10 8 7 33 33 H 0.97002 * 120.00082 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47195 * 184.99757 * 21 11 10 35 35 H 1.08994 * 109.47052 * 304.99681 * 21 11 10 36 36 H 1.08997 * 109.47016 * 179.97438 * 22 21 11 37 37 H 1.08999 * 109.47075 * 300.00033 * 22 21 11 38 38 H 1.09006 * 109.47340 * 60.00416 * 22 21 11 39 39 H 1.07998 * 120.48980 * 179.69889 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2454 2.0240 1.1523 5 6 2.6865 3.2703 1.1950 6 6 2.9256 3.9434 0.0000 7 7 3.3932 5.2631 0.0000 8 6 4.2062 5.6899 -0.9866 9 8 4.6112 4.9055 -1.8226 10 7 4.5704 6.9861 -1.0462 11 6 5.4546 7.4500 -2.1182 12 1 5.2351 6.9004 -3.0336 13 6 5.2326 8.9223 -2.3508 14 1 4.5058 9.4589 -1.7590 15 6 5.9572 9.5842 -3.3191 16 7 6.8418 8.9307 -4.0402 17 14 5.6814 11.4091 -3.6079 18 1 5.9807 12.1583 -2.3612 19 1 6.5769 11.8790 -4.6954 20 1 4.2672 11.6405 -3.9972 21 6 6.9116 7.2111 -1.7169 22 6 7.1689 5.7073 -1.6021 23 6 2.6825 3.2717 -1.1951 24 7 2.2450 2.0242 -1.1523 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8586 3.7585 2.1429 31 1 3.1320 5.8702 0.7100 32 1 4.2505 7.6111 -0.3769 33 1 7.3514 9.3963 -4.7217 34 1 7.5712 7.6359 -2.4735 35 1 7.1065 7.6874 -0.7561 36 1 8.2070 5.5371 -1.3166 37 1 6.5093 5.2825 -0.8455 38 1 6.9740 5.2309 -2.5630 39 1 2.8510 3.7612 -2.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157769574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:03 Heat of formation + Delta-G solvation = -11.523681 kcal Electronic energy + Delta-G solvation = -21380.283916 eV Core-core repulsion = 18129.032710 eV Total energy + Delta-G solvation = -3251.251206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.40168 -40.99894 -37.56830 -36.24326 -34.77601 -34.63318 -34.15372 -32.72875 -30.38277 -28.76206 -25.98790 -25.69909 -24.88768 -23.12548 -22.29554 -21.43304 -20.16464 -18.91126 -18.32734 -17.82837 -17.66833 -16.93148 -16.43125 -16.11904 -15.82728 -15.16469 -14.98503 -14.76765 -14.56728 -14.46711 -14.17768 -13.55314 -13.38060 -13.17366 -12.91563 -12.82419 -12.65420 -12.25516 -12.15017 -12.06915 -11.99889 -11.97777 -11.83593 -11.56661 -11.21044 -11.04738 -10.52936 -10.28895 -9.79892 -9.29300 -8.15462 -6.32504 -0.17357 0.02437 1.46103 1.47842 1.54825 1.62085 2.12402 2.42511 2.74431 3.01465 3.14495 3.17567 3.30657 3.57390 3.88815 4.12503 4.32737 4.42240 4.49611 4.56880 4.65089 4.75462 4.77267 5.02982 5.03988 5.09826 5.15848 5.24013 5.34219 5.43195 5.51184 5.52303 5.60343 5.70754 5.85033 5.95829 6.16141 6.19277 6.75192 7.06502 7.18191 7.35443 7.63524 8.89695 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037295 B = 0.003462 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.589452 B = 8086.601438 C = 8230.926745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.276 3.724 4 N -0.503 5.503 5 C 0.132 3.868 6 C 0.068 3.932 7 N -0.662 5.662 8 C 0.693 3.307 9 O -0.613 6.613 10 N -0.708 5.708 11 C 0.296 3.704 12 H 0.002 0.998 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 0.969 3.031 18 H -0.264 1.264 19 H -0.289 1.289 20 H -0.272 1.272 21 C -0.121 4.121 22 C -0.121 4.121 23 C 0.128 3.872 24 N -0.517 5.517 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.210 0.790 31 H 0.428 0.572 32 H 0.405 0.595 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.024 0.976 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -9.719 12.766 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C 0.008 3.992 4 N -0.216 5.216 5 C -0.038 4.038 6 C -0.033 4.033 7 N -0.313 5.313 8 C 0.393 3.607 9 O -0.492 6.492 10 N -0.360 5.360 11 C 0.193 3.807 12 H 0.020 0.980 13 C -0.586 4.586 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.215 1.215 20 H -0.197 1.197 21 C -0.161 4.161 22 C -0.178 4.178 23 C -0.040 4.040 24 N -0.232 5.232 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.226 0.774 31 H 0.268 0.732 32 H 0.240 0.760 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.834 -11.212 11.810 19.023 hybrid contribution 0.374 2.500 -0.203 2.536 sum -9.459 -8.712 11.607 17.324 Atomic orbital electron populations 1.21652 0.92652 1.03579 1.01579 1.20425 0.97451 0.86356 1.04798 1.23765 0.93370 0.98801 0.83227 1.68276 1.13619 1.09636 1.30090 1.23619 0.93240 0.89237 0.97741 1.19367 1.00108 0.87224 0.96613 1.42278 1.50015 1.10287 1.28704 1.16181 0.79049 0.83547 0.81886 1.90916 1.60519 1.54960 1.42834 1.45420 1.51893 1.06388 1.32343 1.18297 0.85584 0.92999 0.83838 0.98027 1.21528 1.22861 0.93910 1.20277 0.90782 1.25728 0.94466 1.02969 0.95171 1.70037 1.24772 1.37943 1.22496 0.85449 0.77960 0.79250 0.77974 1.18877 1.21458 1.19743 1.21812 0.99861 0.94097 1.00301 1.21646 0.98986 0.97283 0.99896 1.23296 0.91492 0.90431 0.98830 1.68274 1.13790 1.09720 1.31388 0.92636 0.93601 0.89246 0.89131 0.87955 0.77360 0.73229 0.75994 0.92603 0.90979 0.93832 0.93918 0.93988 0.95656 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.05 -0.97 6.37 29.85 0.19 -0.78 16 3 C 0.28 7.30 6.89 138.75 0.96 8.25 16 4 N -0.50 -12.38 10.32 -187.38 -1.93 -14.31 16 5 C 0.13 2.86 11.26 84.86 0.96 3.82 16 6 C 0.07 1.86 6.34 38.31 0.24 2.10 16 7 N -0.66 -17.00 5.38 -316.57 -1.70 -18.70 16 8 C 0.69 25.25 6.90 179.05 1.24 26.48 16 9 O -0.61 -27.63 11.19 -3.99 -0.04 -27.68 16 10 N -0.71 -26.55 5.02 -461.40 -2.32 -28.87 16 11 C 0.30 14.39 2.24 44.25 0.10 14.49 16 12 H 0.00 0.11 7.58 -2.38 -0.02 0.09 16 13 C -0.55 -27.54 8.73 25.60 0.22 -27.31 16 14 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.02 0.89 5.29 84.65 0.45 1.33 16 16 N -0.91 -50.99 11.30 21.44 0.24 -50.75 16 17 Si 0.97 40.74 29.54 68.60 2.03 42.77 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 22 C -0.12 -5.33 8.51 71.98 0.61 -4.72 16 23 C 0.13 4.22 9.94 84.87 0.84 5.06 16 24 N -0.52 -16.29 10.32 -187.39 -1.93 -18.22 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.43 7.16 8.84 -92.71 -0.82 6.34 16 32 H 0.40 12.24 8.56 -92.71 -0.79 11.45 16 33 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.07 3.86 5.96 -2.39 -0.01 3.85 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 38 H 0.02 1.21 7.84 -2.38 -0.02 1.19 16 39 H 0.16 5.85 6.48 -2.91 -0.02 5.83 16 Total: -1.00 -67.05 324.20 0.49 -66.56 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.53 Total: 27.50 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 6.69 Total: 21.70 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -7.65 Total: -130.85 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -67.05 0.49 -66.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157769574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.034 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds