Wall clock time and date at job start Tue Mar 31 2020 00:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.50702 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.29945 * 126.28518 * 90.02575 * 4 3 2 6 6 O 1.21304 * 110.24923 * 179.97438 * 5 4 3 7 7 C 1.33641 * 109.81035 * 0.02562 * 6 5 4 8 8 C 1.50708 * 126.54941 * 179.97438 * 7 6 5 9 9 N 1.46892 * 109.46578 * 269.97267 * 8 7 6 10 10 C 1.46900 * 110.99791 * 169.99941 * 9 8 7 11 11 C 1.50700 * 109.47200 * 284.31783 * 10 9 8 12 12 H 1.07999 * 119.99930 * 4.89734 * 11 10 9 13 13 C 1.37882 * 119.99783 * 184.89872 * 11 10 9 14 14 N 1.31514 * 119.99564 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00165 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47494 * 89.99866 * 15 13 11 17 17 H 1.48501 * 109.46993 * 209.99611 * 15 13 11 18 18 H 1.48504 * 109.47177 * 329.99674 * 15 13 11 19 19 C 1.46904 * 111.00429 * 293.94994 * 9 8 7 20 20 C 1.53000 * 109.47472 * 163.99602 * 19 9 8 21 21 C 1.47193 * 109.47143 * 179.37914 * 20 19 9 22 22 N 6.19022 * 121.87334 * 129.48564 * 2 1 3 23 23 N 1.31131 * 106.90090 * 359.76111 * 7 6 5 24 24 H 1.08998 * 109.46714 * 59.99916 * 1 2 3 25 25 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46509 * 299.99899 * 1 2 3 27 27 H 1.08995 * 109.46639 * 239.99740 * 2 1 3 28 28 H 1.08998 * 109.46714 * 120.00084 * 2 1 3 29 29 H 1.09003 * 109.47404 * 300.00177 * 3 2 1 30 30 H 1.09005 * 109.46855 * 60.00002 * 3 2 1 31 31 H 1.08996 * 109.46539 * 29.97035 * 8 7 6 32 32 H 1.08994 * 109.46797 * 149.97115 * 8 7 6 33 33 H 1.09005 * 109.46877 * 44.31526 * 10 9 8 34 34 H 1.09003 * 109.47510 * 164.31071 * 10 9 8 35 35 H 0.97001 * 119.99850 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.46994 * 284.00112 * 19 9 8 37 37 H 1.08999 * 109.46235 * 43.99562 * 19 9 8 38 38 H 1.09005 * 109.46931 * 299.37989 * 20 19 9 39 39 H 1.08996 * 109.46790 * 59.37506 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3166 1.4427 -1.0465 6 8 5.4823 1.4431 -0.7109 7 6 5.5697 1.4425 0.6226 8 6 6.8365 1.4421 1.4390 9 7 7.2476 0.0571 1.7041 10 6 8.5944 0.0105 2.2887 11 6 9.6183 0.2654 1.2127 12 1 9.2989 0.5221 0.2135 13 6 10.9626 0.1708 1.5040 14 7 11.8561 0.3927 0.5647 15 14 11.5149 -0.2741 3.2321 16 1 11.6399 -1.7492 3.3476 17 1 12.8301 0.3573 3.5093 18 1 10.5138 0.2162 4.2133 19 6 6.2748 -0.6247 2.5683 20 6 6.5046 -2.1359 2.5020 21 6 5.5395 -2.8180 3.3794 22 7 4.7988 -3.3427 4.0571 23 7 4.3426 1.4469 1.0851 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 7.6240 1.9557 0.8877 32 1 6.6599 1.9560 2.3839 33 1 8.6817 0.7743 3.0615 34 1 8.7661 -0.9722 2.7282 35 1 12.8018 0.3258 0.7695 36 1 6.3995 -0.2830 3.5958 37 1 5.2645 -0.3955 2.2293 38 1 6.3690 -2.4793 1.4763 39 1 7.5186 -2.3639 2.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173307035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:27 Heat of formation + Delta-G solvation = 90.576650 kcal Electronic energy + Delta-G solvation = -21296.900927 eV Core-core repulsion = 18050.077123 eV Total energy + Delta-G solvation = -3246.823803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.36047 -37.98197 -36.51818 -36.36628 -34.47313 -32.78503 -32.51353 -31.04588 -28.46860 -27.95067 -26.15009 -23.47360 -23.20239 -22.24594 -21.15089 -20.13425 -17.89061 -17.53706 -17.11074 -16.97266 -15.62849 -15.32858 -14.94193 -14.68353 -14.60369 -14.41034 -13.87038 -13.68264 -13.28876 -12.83000 -12.60946 -12.53334 -12.42345 -12.23383 -12.11838 -11.88144 -11.76333 -11.67480 -11.25266 -11.12674 -11.04121 -10.99174 -10.80027 -10.66431 -10.43106 -10.06536 -9.78334 -9.44019 -8.68638 -7.86444 -6.16578 -4.16368 1.33732 2.33240 2.85074 2.91068 3.06217 3.19939 3.27484 3.30210 3.70340 3.97601 4.15641 4.30562 4.68263 4.76649 4.79597 4.93719 5.12416 5.16258 5.20248 5.27856 5.36828 5.43488 5.51917 5.57474 5.64976 5.71640 5.85991 5.89836 5.94480 6.02537 6.05828 6.08439 6.16067 6.48119 6.62636 7.29980 7.46259 7.62880 7.66864 8.36876 8.46050 8.92903 9.43133 10.95979 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.004769 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.812143 B = 5869.297539 C = 7132.739117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.026 4.026 4 C 0.163 3.837 5 N -0.389 5.389 6 O 0.089 5.911 7 C 0.210 3.790 8 C 0.148 3.852 9 N -0.519 5.519 10 C 0.162 3.838 11 C -0.518 4.518 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.893 5.893 15 Si 0.869 3.131 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.049 3.951 20 C -0.028 4.028 21 C 0.218 3.782 22 N -0.453 5.453 23 N -0.491 5.491 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.077 0.923 33 H -0.001 1.001 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 1.620 0.873 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.064 4.064 4 C -0.110 4.110 5 N -0.097 5.097 6 O 0.031 5.969 7 C -0.010 4.010 8 C 0.019 3.981 9 N -0.245 5.245 10 C 0.037 3.963 11 C -0.556 4.556 12 H 0.103 0.897 13 C -0.129 4.129 14 N -0.531 5.531 15 Si 0.696 3.304 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.081 4.081 20 C -0.068 4.068 21 C -0.099 4.099 22 N -0.130 5.130 23 N -0.226 5.226 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.837 0.612 0.886 16.872 hybrid contribution 0.966 0.316 1.383 1.716 sum -15.871 0.928 2.269 16.059 Atomic orbital electron populations 1.21746 0.94889 1.02083 1.01984 1.21488 0.96253 0.95089 1.02986 1.19965 0.83191 0.98974 1.04314 1.25758 1.00014 1.01231 0.83956 1.74628 0.89656 1.21302 1.24149 1.85337 1.21753 1.64821 1.24978 1.29003 0.96639 0.93375 0.82025 1.20588 0.88179 0.92839 0.96532 1.61850 1.03547 1.12252 1.46846 1.20335 0.84036 0.96663 0.95306 1.20975 0.89027 1.48000 0.97563 0.89668 1.24869 0.96637 0.94823 0.96594 1.69878 1.01413 1.49083 1.32735 0.86968 0.78666 0.79204 0.85544 1.20017 1.21133 1.19151 1.22098 0.97633 0.91934 0.96453 1.19339 0.95559 0.94134 0.97769 1.29202 0.93809 0.93352 0.93582 1.81035 1.11081 1.10079 1.10798 1.71908 0.99844 1.21445 1.29431 0.92510 0.92330 0.92423 0.91569 0.91314 0.89367 0.88908 0.85343 0.90516 0.98281 0.94682 0.92461 0.93940 0.90160 0.86559 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 3 C -0.03 -0.27 5.84 -27.88 -0.16 -0.43 16 4 C 0.16 2.32 7.47 -156.37 -1.17 1.15 16 5 N -0.39 -6.19 12.16 30.90 0.38 -5.81 16 6 O 0.09 1.46 11.31 18.11 0.20 1.67 16 7 C 0.21 3.22 7.16 -13.05 -0.09 3.12 16 8 C 0.15 2.24 5.42 -4.98 -0.03 2.22 16 9 N -0.52 -8.60 4.37 -237.52 -1.04 -9.64 16 10 C 0.16 3.15 3.65 -4.98 -0.02 3.14 16 11 C -0.52 -12.60 9.17 -34.44 -0.32 -12.92 16 12 H 0.09 2.28 7.89 -52.49 -0.41 1.87 16 13 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.89 -25.11 13.96 55.43 0.77 -24.34 16 15 Si 0.87 19.15 27.37 -169.99 -4.65 14.50 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -5.55 6.69 56.52 0.38 -5.18 16 19 C 0.05 0.69 4.78 -3.82 -0.02 0.67 16 20 C -0.03 -0.35 5.78 -29.52 -0.17 -0.52 16 21 C 0.22 3.05 15.42 -20.87 -0.32 2.73 16 22 N -0.45 -7.33 18.52 42.03 0.78 -6.55 16 23 N -0.49 -7.36 10.48 -9.87 -0.10 -7.47 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.13 2.04 7.32 -51.93 -0.38 1.66 16 32 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.00 -0.01 7.40 -51.93 -0.38 -0.39 16 34 H 0.04 0.67 5.40 -51.93 -0.28 0.38 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.08 1.15 6.10 -51.93 -0.32 0.83 16 38 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.12 1.44 6.52 -51.93 -0.34 1.10 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -28.94 335.30 -6.29 -35.23 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.49 Total: -1.53 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.18 Total: -1.11 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.79 Total: -53.81 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.65 Total: 14.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.94 -6.29 -35.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173307035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.805 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds