Wall clock time and date at job start Tue Mar 31 2020 00:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.50702 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.29945 * 126.28518 * 90.02575 * 4 3 2 6 6 O 1.21304 * 110.24923 * 179.97438 * 5 4 3 7 7 C 1.33641 * 109.81035 * 0.02562 * 6 5 4 8 8 C 1.50708 * 126.54941 * 179.97438 * 7 6 5 9 9 N 1.46892 * 109.46578 * 269.97267 * 8 7 6 10 10 C 1.46900 * 110.99791 * 169.99941 * 9 8 7 11 11 C 1.50700 * 109.47200 * 284.31783 * 10 9 8 12 12 H 1.07999 * 119.99930 * 4.89734 * 11 10 9 13 13 C 1.37882 * 119.99783 * 184.89872 * 11 10 9 14 14 N 1.31514 * 119.99564 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00165 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47494 * 89.99866 * 15 13 11 17 17 H 1.48501 * 109.46993 * 209.99611 * 15 13 11 18 18 H 1.48504 * 109.47177 * 329.99674 * 15 13 11 19 19 C 1.46904 * 111.00429 * 293.94994 * 9 8 7 20 20 C 1.53000 * 109.47472 * 163.99602 * 19 9 8 21 21 C 1.47193 * 109.47143 * 179.37914 * 20 19 9 22 22 N 6.19022 * 121.87334 * 129.48564 * 2 1 3 23 23 N 1.31131 * 106.90090 * 359.76111 * 7 6 5 24 24 H 1.08998 * 109.46714 * 59.99916 * 1 2 3 25 25 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46509 * 299.99899 * 1 2 3 27 27 H 1.08995 * 109.46639 * 239.99740 * 2 1 3 28 28 H 1.08998 * 109.46714 * 120.00084 * 2 1 3 29 29 H 1.09003 * 109.47404 * 300.00177 * 3 2 1 30 30 H 1.09005 * 109.46855 * 60.00002 * 3 2 1 31 31 H 1.08996 * 109.46539 * 29.97035 * 8 7 6 32 32 H 1.08994 * 109.46797 * 149.97115 * 8 7 6 33 33 H 1.09005 * 109.46877 * 44.31526 * 10 9 8 34 34 H 1.09003 * 109.47510 * 164.31071 * 10 9 8 35 35 H 0.97001 * 119.99850 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.46994 * 284.00112 * 19 9 8 37 37 H 1.08999 * 109.46235 * 43.99562 * 19 9 8 38 38 H 1.09005 * 109.46931 * 299.37989 * 20 19 9 39 39 H 1.08996 * 109.46790 * 59.37506 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 7 4.3166 1.4427 -1.0465 6 8 5.4823 1.4431 -0.7109 7 6 5.5697 1.4425 0.6226 8 6 6.8365 1.4421 1.4390 9 7 7.2476 0.0571 1.7041 10 6 8.5944 0.0105 2.2887 11 6 9.6183 0.2654 1.2127 12 1 9.2989 0.5221 0.2135 13 6 10.9626 0.1708 1.5040 14 7 11.8561 0.3927 0.5647 15 14 11.5149 -0.2741 3.2321 16 1 11.6399 -1.7492 3.3476 17 1 12.8301 0.3573 3.5093 18 1 10.5138 0.2162 4.2133 19 6 6.2748 -0.6247 2.5683 20 6 6.5046 -2.1359 2.5020 21 6 5.5395 -2.8180 3.3794 22 7 4.7988 -3.3427 4.0571 23 7 4.3426 1.4469 1.0851 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 7.6240 1.9557 0.8877 32 1 6.6599 1.9560 2.3839 33 1 8.6817 0.7743 3.0615 34 1 8.7661 -0.9722 2.7282 35 1 12.8018 0.3258 0.7695 36 1 6.3995 -0.2830 3.5958 37 1 5.2645 -0.3955 2.2293 38 1 6.3690 -2.4793 1.4763 39 1 7.5186 -2.3639 2.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173307035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:27 Heat of formation + Delta-G solvation = 71.447957 kcal Electronic energy + Delta-G solvation = -21297.730409 eV Core-core repulsion = 18050.077123 eV Total energy + Delta-G solvation = -3247.653286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.54942 -39.26296 -37.62498 -37.49103 -35.48952 -34.59565 -33.64357 -32.31496 -30.02607 -28.81184 -27.48487 -24.67165 -24.56394 -23.29234 -22.29160 -21.37559 -19.12837 -18.89212 -18.60807 -18.24209 -16.88746 -16.49555 -16.04061 -15.89324 -15.78836 -15.59936 -15.27667 -14.59760 -14.46994 -14.25441 -14.00576 -13.82047 -13.50418 -13.40808 -13.23345 -12.93723 -12.91843 -12.57362 -12.51544 -12.41001 -12.27262 -12.07730 -12.06442 -11.82627 -11.68442 -11.61140 -11.37818 -10.90744 -10.62925 -9.19594 -8.13503 -6.16479 0.12286 1.18773 1.48599 1.51298 1.58861 1.72729 1.80040 1.85944 2.47060 2.61669 2.81988 3.08181 3.21707 3.50729 3.88558 4.01058 4.04032 4.06932 4.15498 4.25521 4.38658 4.56401 4.61722 4.63433 4.72526 4.81578 4.86973 4.87873 4.91234 5.02034 5.04669 5.12127 5.17725 5.21048 5.37088 5.65064 5.95566 6.12784 6.54787 6.63264 6.93587 7.17325 7.46758 9.02718 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.004769 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.812143 B = 5869.297539 C = 7132.739117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.026 4.026 4 C 0.169 3.831 5 N -0.408 5.408 6 O 0.066 5.934 7 C 0.212 3.788 8 C 0.151 3.849 9 N -0.531 5.531 10 C 0.169 3.831 11 C -0.509 4.509 12 H 0.045 0.955 13 C 0.012 3.988 14 N -0.950 5.950 15 Si 0.934 3.066 16 H -0.267 1.267 17 H -0.296 1.296 18 H -0.239 1.239 19 C 0.053 3.947 20 C -0.021 4.021 21 C 0.242 3.758 22 N -0.490 5.490 23 N -0.493 5.493 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.010 0.990 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 1.344 2.717 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.065 4.065 4 C -0.104 4.104 5 N -0.120 5.120 6 O 0.012 5.988 7 C -0.009 4.009 8 C 0.022 3.978 9 N -0.257 5.257 10 C 0.043 3.957 11 C -0.547 4.547 12 H 0.064 0.936 13 C -0.185 4.185 14 N -0.591 5.591 15 Si 0.759 3.241 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.162 1.162 19 C -0.076 4.076 20 C -0.062 4.062 21 C -0.075 4.075 22 N -0.168 5.168 23 N -0.229 5.229 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.551 0.334 2.741 18.756 hybrid contribution 1.402 0.445 0.711 1.634 sum -17.149 0.780 3.453 17.511 Atomic orbital electron populations 1.21719 0.92927 1.02643 1.02944 1.21441 0.97873 0.94256 1.01808 1.20213 0.80658 0.99771 1.05814 1.26464 1.01440 0.99258 0.83246 1.74640 0.89611 1.22754 1.24986 1.85319 1.22337 1.65578 1.25551 1.29005 0.96875 0.93226 0.81760 1.20552 0.87752 0.92285 0.97229 1.61641 1.03040 1.13344 1.47645 1.20132 0.84217 0.97629 0.93720 1.21247 0.90205 1.46016 0.97264 0.93645 1.25731 0.96881 0.95195 1.00722 1.70053 1.01684 1.51910 1.35421 0.85913 0.78170 0.79141 0.80908 1.19192 1.22242 1.16238 1.22082 0.96638 0.92374 0.96531 1.19358 0.95602 0.93117 0.98076 1.29255 0.93052 0.92440 0.92726 1.81069 1.12291 1.11300 1.12103 1.71934 0.99680 1.21601 1.29675 0.91483 0.92011 0.91537 0.92681 0.92573 0.87880 0.87352 0.86849 0.88329 0.97257 0.92980 0.92787 0.92692 0.90304 0.85630 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.11 -2.05 5.92 30.60 0.18 -1.86 16 3 C -0.03 -0.49 5.84 29.85 0.17 -0.31 16 4 C 0.17 4.59 7.47 138.46 1.03 5.63 16 5 N -0.41 -12.84 12.16 -60.32 -0.73 -13.58 16 6 O 0.07 2.17 11.31 74.85 0.85 3.02 16 7 C 0.21 6.35 7.16 88.38 0.63 6.98 16 8 C 0.15 4.43 5.42 85.56 0.46 4.90 16 9 N -0.53 -16.71 4.37 -905.37 -3.96 -20.66 16 10 C 0.17 6.22 3.65 85.56 0.31 6.53 16 11 C -0.51 -24.84 9.17 25.60 0.23 -24.61 16 12 H 0.05 2.53 7.89 -2.91 -0.02 2.50 16 13 C 0.01 0.62 5.47 84.66 0.46 1.09 16 14 N -0.95 -54.95 13.96 21.45 0.30 -54.65 16 15 Si 0.93 38.52 27.37 68.60 1.88 40.40 16 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 17 H -0.30 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.24 -8.72 6.69 99.48 0.67 -8.06 16 19 C 0.05 1.35 4.78 86.30 0.41 1.77 16 20 C -0.02 -0.48 5.78 28.79 0.17 -0.32 16 21 C 0.24 6.20 15.42 89.48 1.38 7.58 16 22 N -0.49 -14.96 18.52 19.97 0.37 -14.59 16 23 N -0.49 -14.10 10.48 -303.19 -3.18 -17.28 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.11 3.66 7.32 -2.39 -0.02 3.64 16 32 H 0.10 2.46 8.12 -2.39 -0.02 2.44 16 33 H 0.01 0.34 7.40 -2.38 -0.02 0.33 16 34 H 0.05 1.78 5.40 -2.39 -0.01 1.77 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.05 1.30 8.05 -2.39 -0.02 1.28 16 37 H 0.08 2.07 6.10 -2.39 -0.01 2.06 16 38 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 39 H 0.13 2.68 6.52 -2.39 -0.02 2.66 16 Total: -1.00 -63.01 335.30 2.71 -60.30 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.01 Total: 10.78 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.17 Total: 6.25 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -7.20 Total: -120.76 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.88 Total: 40.40 kcal Total: -63.01 2.71 -60.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173307035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.749 kcal (2) G-P(sol) polarization free energy of solvation -63.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds