Wall clock time and date at job start Tue Mar 31 2020 00:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 N 1.31794 * 119.03794 * 269.72442 * 3 2 1 5 5 C 1.32272 * 120.89062 * 179.71834 * 4 3 2 6 6 C 1.39224 * 119.01688 * 0.54720 * 5 4 3 7 7 N 1.40000 * 120.87569 * 179.70978 * 6 5 4 8 8 C 1.34783 * 119.99491 * 32.41312 * 7 6 5 9 9 O 1.21582 * 120.00324 * 5.30140 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.30392 * 8 7 6 11 11 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46958 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46976 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99857 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99779 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00266 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99773 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47337 * 59.99557 * 18 16 14 20 20 H 1.48499 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47045 * 299.99871 * 18 16 14 22 22 C 1.39231 * 118.26067 * 359.73588 * 6 5 4 23 23 N 1.31799 * 119.04035 * 90.00193 * 3 2 1 24 24 H 1.08996 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46795 * 300.00190 * 1 2 3 26 26 H 1.09007 * 109.46635 * 59.99776 * 1 2 3 27 27 H 1.09003 * 109.46795 * 239.99810 * 2 1 3 28 28 H 1.08997 * 109.46935 * 120.00644 * 2 1 3 29 29 H 1.07998 * 120.49743 * 180.28058 * 5 4 3 30 30 H 0.97002 * 120.00766 * 212.41499 * 7 6 5 31 31 H 0.96991 * 120.00314 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.46586 * 299.99658 * 11 10 8 33 33 H 1.08994 * 109.47202 * 59.99556 * 11 10 8 34 34 H 1.08999 * 109.47226 * 299.99307 * 12 11 10 35 35 H 1.09000 * 109.47488 * 59.99309 * 12 11 10 36 36 H 1.08996 * 109.46998 * 299.99301 * 13 12 11 37 37 H 1.08993 * 109.47506 * 60.00087 * 13 12 11 38 38 H 0.97001 * 120.00164 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.49087 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2509 2.0220 -1.1523 5 6 2.6865 3.2702 -1.1951 6 6 2.9246 3.9437 -0.0001 7 7 3.3917 5.2635 0.0000 8 6 3.0270 6.1075 -0.9855 9 8 2.2173 5.7534 -1.8205 10 7 3.5599 7.3440 -1.0454 11 6 3.1630 8.2616 -2.1163 12 6 3.9085 9.5877 -1.9539 13 6 3.4945 10.5457 -3.0727 14 6 4.2284 11.8522 -2.9125 15 1 4.9204 11.9860 -2.0942 16 6 4.0162 12.8768 -3.8105 17 7 3.1738 12.7137 -4.8071 18 14 4.9263 14.4959 -3.6122 19 1 6.3896 14.2533 -3.6839 20 1 4.5245 15.4258 -4.6980 21 1 4.5880 15.0961 -2.2967 22 6 2.6865 3.2702 1.1950 23 7 2.2457 2.0239 1.1523 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.8591 3.7583 -2.1429 30 1 3.9779 5.5706 0.7093 31 1 4.2055 7.6266 -0.3790 32 1 3.4103 7.8212 -3.0822 33 1 2.0891 8.4399 -2.0626 34 1 3.6608 10.0279 -0.9881 35 1 4.9826 9.4097 -2.0073 36 1 3.7426 10.1054 -4.0384 37 1 2.4206 10.7239 -3.0197 38 1 3.0248 13.4343 -5.4391 39 1 2.8594 3.7582 2.1428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178825147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:52 Heat of formation + Delta-G solvation = 0.117957 kcal Electronic energy + Delta-G solvation = -20166.106559 eV Core-core repulsion = 16915.360173 eV Total energy + Delta-G solvation = -3250.746386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57977 -40.03108 -36.25089 -35.28229 -33.92940 -33.82933 -33.32638 -31.36295 -29.54711 -26.79236 -25.12004 -24.86730 -23.22886 -22.10532 -21.17981 -20.57661 -18.93868 -17.78558 -17.35687 -16.94018 -16.36282 -15.74377 -15.18407 -15.07662 -14.48843 -14.36530 -14.22483 -14.15231 -13.99180 -13.71982 -12.71887 -12.34096 -12.17719 -11.93393 -11.90402 -11.47016 -11.36758 -11.16145 -11.04760 -10.92160 -10.82198 -10.67576 -10.38843 -9.94840 -9.54765 -9.43452 -9.19815 -9.06954 -8.53783 -8.41541 -6.06115 -4.09710 0.62079 0.86486 2.33226 2.94219 3.28779 3.34032 3.35472 3.54952 3.72514 3.95693 3.97033 4.29574 4.40540 4.64615 4.82071 4.95297 5.03075 5.27866 5.29610 5.50560 5.57029 5.58331 5.67951 5.78093 5.78876 5.95233 6.05692 6.27122 6.31790 6.50229 6.50848 6.76511 6.79425 6.91396 7.57511 7.69487 7.74274 7.89349 7.91779 8.30957 8.35072 8.96582 9.54682 11.05033 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.059414 B = 0.002309 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.152660 B =12123.094725 C =12429.474344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C 0.289 3.711 4 N -0.495 5.495 5 C 0.151 3.849 6 C 0.068 3.932 7 N -0.680 5.680 8 C 0.699 3.301 9 O -0.574 6.574 10 N -0.730 5.730 11 C 0.132 3.868 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 N -0.498 5.498 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.410 0.590 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -21.647 13.154 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C 0.021 3.979 4 N -0.209 5.209 5 C -0.018 4.018 6 C -0.033 4.033 7 N -0.329 5.329 8 C 0.399 3.601 9 O -0.450 6.450 10 N -0.384 5.384 11 C 0.009 3.991 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.050 4.050 23 N -0.211 5.211 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.198 0.802 30 H 0.247 0.753 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.877 -22.700 12.160 25.766 hybrid contribution 1.411 2.394 0.758 2.880 sum 0.535 -20.306 12.918 24.073 Atomic orbital electron populations 1.21703 0.93690 1.02370 1.02528 1.20289 0.96709 0.88013 1.04016 1.23167 0.93563 0.97636 0.83489 1.68313 1.12651 1.09737 1.30162 1.23514 0.91299 0.88438 0.98548 1.19330 1.01357 0.85838 0.96755 1.42507 1.52488 1.08738 1.29138 1.16023 0.81375 0.81059 0.81666 1.90960 1.36404 1.76412 1.41217 1.45425 1.46982 1.12827 1.33129 1.21649 1.00020 0.88971 0.88414 1.21909 0.99000 0.93019 1.01956 1.19024 0.97098 0.92777 0.92444 1.21146 1.25138 0.98251 1.11756 0.92688 1.25032 0.95321 0.98857 0.95251 1.69948 1.35242 1.33097 1.14878 0.86632 0.80124 0.83367 0.77701 1.20238 1.21246 1.20250 1.23025 0.94132 0.90828 0.97038 1.68177 1.13021 1.09383 1.30505 0.91519 0.92375 0.92223 0.89257 0.89369 0.80235 0.75342 0.76862 0.91465 0.91551 0.92640 0.92612 0.96180 0.96210 0.92806 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.05 -0.43 6.37 -27.88 -0.18 -0.61 16 3 C 0.29 3.33 6.89 -157.19 -1.08 2.24 16 4 N -0.50 -6.45 10.32 -10.58 -0.11 -6.56 16 5 C 0.15 1.97 9.94 -17.00 -0.17 1.80 16 6 C 0.07 0.75 6.34 -83.39 -0.53 0.22 16 7 N -0.68 -6.48 5.38 -14.03 -0.08 -6.56 16 8 C 0.70 9.36 8.34 -86.91 -0.72 8.64 16 9 O -0.57 -10.05 14.04 5.29 0.07 -9.98 16 10 N -0.73 -9.14 5.56 -65.22 -0.36 -9.50 16 11 C 0.13 2.14 5.67 -4.04 -0.02 2.12 16 12 C -0.12 -2.20 5.27 -26.73 -0.14 -2.35 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.12 1.14 11.26 -17.00 -0.19 0.95 16 23 N -0.50 -5.54 10.32 -10.58 -0.11 -5.65 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.18 2.52 6.47 -52.49 -0.34 2.18 16 30 H 0.41 2.32 8.84 -40.82 -0.36 1.96 16 31 H 0.40 3.69 8.49 -40.82 -0.35 3.35 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -33.34 336.75 -8.67 -42.01 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.66 Total: 1.05 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.22 Total: -0.36 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.08 Total: -53.91 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.34 -8.67 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178825147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.132 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds