Wall clock time and date at job start Tue Mar 31 2020 00:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47199 * 2 1 4 4 N 1.31794 * 119.03794 * 269.72442 * 3 2 1 5 5 C 1.32272 * 120.89062 * 179.71834 * 4 3 2 6 6 C 1.39224 * 119.01688 * 0.54720 * 5 4 3 7 7 N 1.40000 * 120.87569 * 179.70978 * 6 5 4 8 8 C 1.34783 * 119.99491 * 32.41312 * 7 6 5 9 9 O 1.21582 * 120.00324 * 5.30140 * 8 7 6 10 10 N 1.34779 * 119.99598 * 185.30392 * 8 7 6 11 11 C 1.46507 * 119.99686 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46958 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46976 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99857 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99779 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00266 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99773 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47337 * 59.99557 * 18 16 14 20 20 H 1.48499 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47045 * 299.99871 * 18 16 14 22 22 C 1.39231 * 118.26067 * 359.73588 * 6 5 4 23 23 N 1.31799 * 119.04035 * 90.00193 * 3 2 1 24 24 H 1.08996 * 109.47007 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46795 * 300.00190 * 1 2 3 26 26 H 1.09007 * 109.46635 * 59.99776 * 1 2 3 27 27 H 1.09003 * 109.46795 * 239.99810 * 2 1 3 28 28 H 1.08997 * 109.46935 * 120.00644 * 2 1 3 29 29 H 1.07998 * 120.49743 * 180.28058 * 5 4 3 30 30 H 0.97002 * 120.00766 * 212.41499 * 7 6 5 31 31 H 0.96991 * 120.00314 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.46586 * 299.99658 * 11 10 8 33 33 H 1.08994 * 109.47202 * 59.99556 * 11 10 8 34 34 H 1.08999 * 109.47226 * 299.99307 * 12 11 10 35 35 H 1.09000 * 109.47488 * 59.99309 * 12 11 10 36 36 H 1.08996 * 109.46998 * 299.99301 * 13 12 11 37 37 H 1.08993 * 109.47506 * 60.00087 * 13 12 11 38 38 H 0.97001 * 120.00164 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.49087 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2509 2.0220 -1.1523 5 6 2.6865 3.2702 -1.1951 6 6 2.9246 3.9437 -0.0001 7 7 3.3917 5.2635 0.0000 8 6 3.0270 6.1075 -0.9855 9 8 2.2173 5.7534 -1.8205 10 7 3.5599 7.3440 -1.0454 11 6 3.1630 8.2616 -2.1163 12 6 3.9085 9.5877 -1.9539 13 6 3.4945 10.5457 -3.0727 14 6 4.2284 11.8522 -2.9125 15 1 4.9204 11.9860 -2.0942 16 6 4.0162 12.8768 -3.8105 17 7 3.1738 12.7137 -4.8071 18 14 4.9263 14.4959 -3.6122 19 1 6.3896 14.2533 -3.6839 20 1 4.5245 15.4258 -4.6980 21 1 4.5880 15.0961 -2.2967 22 6 2.6865 3.2702 1.1950 23 7 2.2457 2.0239 1.1523 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.8591 3.7583 -2.1429 30 1 3.9779 5.5706 0.7093 31 1 4.2055 7.6266 -0.3790 32 1 3.4103 7.8212 -3.0822 33 1 2.0891 8.4399 -2.0626 34 1 3.6608 10.0279 -0.9881 35 1 4.9826 9.4097 -2.0073 36 1 3.7426 10.1054 -4.0384 37 1 2.4206 10.7239 -3.0197 38 1 3.0248 13.4343 -5.4391 39 1 2.8594 3.7582 2.1428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178825147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:52 Heat of formation + Delta-G solvation = -23.636569 kcal Electronic energy + Delta-G solvation = -20167.136633 eV Core-core repulsion = 16915.360173 eV Total energy + Delta-G solvation = -3251.776460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.47364 -41.07150 -37.41097 -36.48096 -35.29431 -34.77616 -34.49131 -33.01576 -30.51578 -28.45375 -26.07682 -25.76311 -24.79253 -22.97092 -22.37763 -22.02814 -19.97901 -18.85059 -18.36550 -18.26198 -17.74065 -16.87600 -16.57858 -16.15343 -16.11744 -15.53363 -15.37527 -15.05461 -14.79472 -14.50479 -14.26241 -13.75872 -13.66482 -13.36433 -12.90400 -12.72350 -12.55283 -12.41067 -12.24412 -12.10201 -12.03186 -11.90757 -11.68408 -11.65708 -11.36422 -11.18867 -10.54016 -10.35022 -10.23809 -9.42390 -8.18786 -6.30120 -0.24454 -0.00572 1.33951 1.42693 1.45070 1.53007 1.88356 2.42265 2.68696 2.94878 3.04509 3.14354 3.15125 3.48174 3.81149 4.07652 4.14790 4.23501 4.30184 4.39396 4.55862 4.61155 4.71375 4.93558 4.96071 5.00442 5.01695 5.12739 5.18050 5.30098 5.36819 5.45972 5.52926 5.72386 5.75829 5.85560 5.91389 6.22995 6.84397 6.88462 7.03227 7.31635 7.39499 8.92963 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.059414 B = 0.002309 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.152660 B =12123.094725 C =12429.474344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C 0.280 3.720 4 N -0.518 5.518 5 C 0.129 3.871 6 C 0.062 3.938 7 N -0.656 5.656 8 C 0.699 3.301 9 O -0.618 6.618 10 N -0.716 5.716 11 C 0.148 3.852 12 C -0.101 4.101 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.135 3.865 23 N -0.506 5.506 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.433 0.567 31 H 0.417 0.583 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.070 0.930 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -21.883 15.946 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C 0.013 3.987 4 N -0.232 5.232 5 C -0.039 4.039 6 C -0.039 4.039 7 N -0.306 5.306 8 C 0.399 3.601 9 O -0.498 6.498 10 N -0.371 5.371 11 C 0.023 3.977 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.035 4.035 23 N -0.219 5.219 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.178 0.822 30 H 0.273 0.727 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.520 -22.949 15.016 27.430 hybrid contribution 0.964 2.391 -0.089 2.579 sum 1.484 -20.558 14.927 25.449 Atomic orbital electron populations 1.21673 0.93198 1.03571 1.01356 1.20433 0.97007 0.86501 1.05098 1.23760 0.92964 0.98756 0.83235 1.68295 1.13645 1.10018 1.31284 1.23368 0.92591 0.89042 0.98909 1.19336 1.01889 0.86080 0.96625 1.42122 1.52185 1.07689 1.28645 1.16096 0.80881 0.81290 0.81800 1.90948 1.38426 1.77256 1.43129 1.44985 1.47272 1.12137 1.32688 1.21175 0.98793 0.88724 0.88993 1.21594 0.99865 0.92429 1.00000 1.18947 0.95287 0.93714 0.93601 1.21663 1.25146 0.99185 1.11855 0.91395 1.26028 0.96235 1.03038 0.94940 1.70102 1.37085 1.34352 1.15990 0.85480 0.79084 0.78443 0.77902 1.19018 1.21370 1.19017 1.23667 0.91796 0.90093 0.97908 1.68298 1.13426 1.10051 1.30117 0.89155 0.92929 0.93916 0.88720 0.87689 0.82193 0.72668 0.74518 0.92961 0.93125 0.91104 0.91108 0.98912 0.98952 0.92863 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.90 71.98 0.71 -1.29 16 2 C -0.05 -0.80 6.37 29.85 0.19 -0.61 16 3 C 0.28 6.22 6.89 138.75 0.96 7.18 16 4 N -0.52 -13.69 10.32 -187.40 -1.93 -15.62 16 5 C 0.13 3.43 9.94 84.86 0.84 4.27 16 6 C 0.06 1.27 6.34 38.31 0.24 1.51 16 7 N -0.66 -11.15 5.38 -316.57 -1.70 -12.86 16 8 C 0.70 18.10 8.34 179.05 1.49 19.59 16 9 O -0.62 -22.10 14.04 -3.97 -0.06 -22.16 16 10 N -0.72 -16.79 5.56 -478.53 -2.66 -19.45 16 11 C 0.15 4.77 5.67 86.38 0.49 5.26 16 12 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 13 C 0.02 1.12 4.97 29.85 0.15 1.27 16 14 C -0.54 -29.34 9.11 25.60 0.23 -29.10 16 15 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 17 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 18 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 C 0.14 2.22 11.26 84.87 0.96 3.18 16 23 N -0.51 -10.27 10.32 -187.40 -1.93 -12.20 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.16 4.80 6.47 -2.91 -0.02 4.78 16 30 H 0.43 3.39 8.84 -92.71 -0.82 2.57 16 31 H 0.42 6.50 8.49 -92.71 -0.79 5.71 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -74.45 336.75 0.38 -74.07 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.54 Total: 11.33 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.89 Total: 8.02 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -7.95 Total: -116.32 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.06 Total: -22.16 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.45 0.38 -74.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178825147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.437 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds