Wall clock time and date at job start Tue Mar 31 2020 00:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50713 * 119.99855 * 2 1 4 4 C 1.50704 * 120.00412 * 179.97438 * 2 1 3 5 5 N 1.46493 * 109.47106 * 94.99910 * 4 2 1 6 6 C 1.46501 * 120.00126 * 269.99858 * 5 4 2 7 7 C 1.34785 * 120.00217 * 90.00017 * 5 4 2 8 8 O 1.21595 * 119.99655 * 0.02562 * 7 5 4 9 9 N 1.34773 * 119.99880 * 179.97438 * 7 5 4 10 10 C 1.40202 * 119.99643 * 180.02562 * 9 7 5 11 11 C 1.40403 * 125.97095 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86459 * 179.74164 * 11 10 9 13 13 N 1.34965 * 107.86272 * 0.36524 * 12 11 10 14 14 C 1.46495 * 125.98197 * 179.89938 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71610 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31210 * 125.97221 * 179.97438 * 10 9 7 24 24 H 1.08004 * 119.99784 * 179.97438 * 1 2 3 25 25 H 1.08005 * 120.00673 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46725 * 270.00215 * 3 2 1 27 27 H 1.08997 * 109.46814 * 29.99749 * 3 2 1 28 28 H 1.09001 * 109.46737 * 150.00110 * 3 2 1 29 29 H 1.08999 * 109.47078 * 334.99717 * 4 2 1 30 30 H 1.08998 * 109.46779 * 215.00150 * 4 2 1 31 31 H 1.08990 * 109.47389 * 270.00133 * 6 5 4 32 32 H 1.09001 * 109.46715 * 30.00226 * 6 5 4 33 33 H 1.09003 * 109.47226 * 149.99969 * 6 5 4 34 34 H 0.96992 * 120.00253 * 0.02562 * 9 7 5 35 35 H 1.07996 * 126.06696 * 359.96955 * 11 10 9 36 36 H 1.08001 * 126.07362 * 180.25936 * 12 11 10 37 37 H 1.09000 * 109.47378 * 4.71269 * 14 13 12 38 38 H 1.09001 * 109.47153 * 244.71390 * 14 13 12 39 39 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 6 1.4916 -2.4822 -2.1733 7 6 3.5792 -1.2540 -1.9066 8 8 4.3432 -0.5790 -1.2440 9 7 3.8999 -1.5887 -3.1721 10 6 5.1143 -1.1581 -3.7247 11 6 6.0849 -0.3779 -3.0762 12 6 7.1061 -0.1829 -3.9410 13 7 6.7948 -0.8066 -5.0967 14 6 7.6240 -0.8464 -6.3037 15 6 7.8612 -2.2799 -6.7034 16 1 7.4370 -3.0813 -6.1165 17 6 8.6205 -2.5685 -7.8174 18 7 8.8320 -3.8197 -8.1629 19 14 9.3548 -1.1825 -8.8319 20 1 8.3990 -0.7899 -9.8985 21 1 9.6238 -0.0153 -7.9541 22 1 10.6251 -1.6404 -9.4496 23 7 5.5429 -1.4146 -4.9381 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 2.2450 1.6199 -1.0277 27 1 1.4743 2.0648 0.5138 28 1 3.0158 1.1748 0.5138 29 1 1.4386 -2.0853 0.4353 30 1 2.9741 -1.1985 0.5900 31 1 1.7220 -3.5377 -2.0297 32 1 0.4669 -2.2876 -1.8570 33 1 1.6012 -2.2265 -3.2273 34 1 3.2906 -2.1275 -3.7006 35 1 6.0278 -0.0035 -2.0648 36 1 8.0096 0.3746 -3.7428 37 1 8.5798 -0.3619 -6.1041 38 1 7.1136 -0.3235 -7.1126 39 1 9.3695 -4.0228 -8.9444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181735841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:32 Heat of formation + Delta-G solvation = 65.692597 kcal Electronic energy + Delta-G solvation = -21167.693972 eV Core-core repulsion = 17919.791115 eV Total energy + Delta-G solvation = -3247.902857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27311 -41.08205 -37.74978 -36.22902 -35.51063 -34.84421 -32.96100 -30.96747 -29.13858 -28.55911 -28.21341 -26.73945 -24.49890 -22.78779 -21.85885 -20.75147 -19.57877 -19.09122 -18.88737 -18.11360 -17.34142 -16.99923 -16.37452 -16.14448 -15.67643 -15.45313 -15.05937 -14.78821 -14.62179 -14.44522 -14.17488 -13.97304 -13.86942 -13.72855 -13.26308 -12.95512 -12.66244 -12.60579 -12.51095 -12.19112 -12.08376 -11.81611 -11.64324 -11.45155 -11.06222 -10.87081 -10.07404 -9.84260 -9.67376 -9.01607 -8.37004 -6.47275 0.92517 1.08304 1.35805 1.39958 1.44284 1.50198 1.70880 2.13832 2.29450 2.40697 2.91637 2.95785 3.89278 3.94526 3.97982 4.18916 4.22073 4.46501 4.57330 4.61477 4.71417 4.74037 4.78879 4.81902 4.86393 4.87854 4.94407 5.07512 5.12166 5.17831 5.25030 5.50691 5.67790 5.73469 5.92274 5.97112 6.02982 6.42300 6.56450 6.62736 7.09069 7.15899 7.40123 8.80144 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038582 B = 0.003346 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.550402 B = 8366.562281 C = 8748.138205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C -0.110 4.110 4 C 0.165 3.835 5 N -0.617 5.617 6 C 0.067 3.933 7 C 0.708 3.292 8 O -0.592 6.592 9 N -0.640 5.640 10 C 0.284 3.716 11 C -0.292 4.292 12 C 0.061 3.939 13 N -0.345 5.345 14 C 0.240 3.760 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.229 1.229 22 H -0.278 1.278 23 N -0.351 5.351 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.168 0.832 36 H 0.210 0.790 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 8.491 15.223 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.167 4.167 4 C 0.043 3.957 5 N -0.353 5.353 6 C -0.075 4.075 7 C 0.409 3.591 8 O -0.470 6.470 9 N -0.294 5.294 10 C 0.028 3.972 11 C -0.323 4.323 12 C -0.087 4.087 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.152 1.152 22 H -0.203 1.203 23 N -0.182 5.182 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.255 0.745 35 H 0.185 0.815 36 H 0.227 0.773 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.964 8.250 14.403 23.029 hybrid contribution 0.335 -0.048 -0.353 0.489 sum -15.629 8.202 14.050 22.559 Atomic orbital electron populations 1.23944 0.94313 1.03205 0.98594 1.22129 0.96140 0.95896 1.02076 1.20727 1.00010 0.95136 1.00792 1.20554 1.00029 0.94626 0.80481 1.47106 1.17439 1.55268 1.15531 1.22066 0.94811 0.95292 0.95300 1.15810 0.82804 0.80163 0.80317 1.90808 1.51451 1.43838 1.60900 1.41642 1.18111 1.55904 1.13702 1.19165 0.88559 0.97547 0.91955 1.21720 0.95258 1.11895 1.03468 1.23225 1.01401 0.98540 0.85523 1.48490 1.13157 1.38425 1.12663 1.19891 0.89837 0.97163 0.81125 1.21244 1.33401 0.91424 1.12418 0.95589 1.25928 0.95733 0.98908 0.97900 1.70051 1.40052 1.20705 1.27379 0.85609 0.78148 0.79237 0.79325 1.19030 1.15215 1.20346 1.77295 0.99175 1.24349 1.17382 0.86313 0.87810 0.93952 0.90888 0.92854 0.86526 0.90848 0.90894 0.87775 0.91460 0.74493 0.81516 0.77324 0.89905 0.93791 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 13.89 67.79 0.94 -0.97 16 2 C -0.16 -2.69 5.63 -16.47 -0.09 -2.79 16 3 C -0.11 -2.22 9.98 71.24 0.71 -1.51 16 4 C 0.16 2.83 5.56 85.64 0.48 3.30 16 5 N -0.62 -12.77 2.86 -869.31 -2.48 -15.25 16 6 C 0.07 0.87 10.20 127.77 1.30 2.18 16 7 C 0.71 21.46 8.25 179.05 1.48 22.94 16 8 O -0.59 -21.27 12.99 -4.02 -0.05 -21.32 16 9 N -0.64 -20.99 5.32 -321.22 -1.71 -22.70 16 10 C 0.28 11.76 8.11 133.31 1.08 12.84 16 11 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 12 C 0.06 2.32 11.44 83.52 0.96 3.28 16 13 N -0.35 -15.82 3.67 -351.85 -1.29 -17.11 16 14 C 0.24 11.23 5.33 85.63 0.46 11.69 16 15 C -0.55 -31.90 9.79 25.60 0.25 -31.65 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.80 5.47 84.65 0.46 1.26 16 18 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 19 Si 0.96 40.96 27.47 68.60 1.88 42.84 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.23 -8.49 6.54 99.48 0.65 -7.84 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 N -0.35 -16.74 12.42 -54.43 -0.68 -17.42 16 24 H 0.12 0.88 7.99 -2.91 -0.02 0.85 16 25 H 0.10 1.12 8.04 -2.91 -0.02 1.09 16 26 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 28 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 29 H 0.12 1.20 7.92 -2.39 -0.02 1.18 16 30 H 0.07 1.57 7.37 -2.39 -0.02 1.55 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 33 H 0.07 0.92 6.36 -2.39 -0.02 0.90 16 34 H 0.42 11.49 6.55 -92.71 -0.61 10.89 16 35 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 36 H 0.21 5.87 8.06 -2.91 -0.02 5.84 16 37 H 0.08 3.37 7.12 -2.39 -0.02 3.36 16 38 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -78.24 332.44 4.60 -73.64 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.39 Total: 26.29 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 8.23 Total: 9.22 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -5.86 Total: -130.68 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal Total: -78.24 4.60 -73.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181735841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.336 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds