Wall clock time and date at job start Tue Mar 31 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47281 * 2 1 4 4 H 1.08998 * 109.47170 * 54.99904 * 3 2 1 5 5 C 1.50701 * 109.47314 * 175.00010 * 3 2 1 6 6 H 1.07995 * 119.99890 * 119.99439 * 5 3 2 7 7 C 1.37876 * 120.00043 * 299.99861 * 5 3 2 8 8 N 1.31515 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99934 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47146 * 60.00182 * 9 7 5 11 11 H 1.48498 * 109.46948 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47446 * 300.00066 * 9 7 5 13 13 N 1.46500 * 109.46913 * 294.99979 * 3 2 1 14 14 C 1.34773 * 120.00050 * 84.99722 * 13 3 2 15 15 O 1.21277 * 120.00143 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00318 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.47383 * 180.02562 * 16 14 13 18 18 C 1.35306 * 125.86781 * 125.29463 * 17 16 14 19 19 C 1.35352 * 106.17827 * 180.18886 * 18 17 16 20 20 C 1.50697 * 126.75683 * 179.85285 * 19 18 17 21 21 C 1.53000 * 117.49504 * 16.09102 * 20 19 18 22 22 C 1.52997 * 60.00347 * 107.48912 * 21 20 19 23 23 N 1.33777 * 106.49092 * 359.59003 * 19 18 17 24 24 N 1.28628 * 108.88539 * 0.26502 * 23 19 18 25 25 H 1.08998 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47101 * 299.99723 * 1 2 3 27 27 H 1.09001 * 109.47450 * 59.99924 * 1 2 3 28 28 H 1.09000 * 109.47038 * 239.99526 * 2 1 3 29 29 H 1.09009 * 109.47124 * 119.99524 * 2 1 3 30 30 H 0.96994 * 119.99850 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00030 * 264.99892 * 13 3 2 32 32 H 1.08999 * 109.46680 * 60.00031 * 16 14 13 33 33 H 1.09002 * 109.46985 * 300.00735 * 16 14 13 34 34 H 1.08009 * 126.91407 * 0.04258 * 18 17 16 35 35 H 1.08990 * 115.56356 * 230.40274 * 20 19 18 36 36 H 1.09002 * 117.49696 * 214.98125 * 21 20 19 37 37 H 1.09002 * 117.50343 * 0.02562 * 21 20 19 38 38 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 39 39 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4063 0.3367 2.1729 9 14 6.0050 0.8801 1.3811 10 1 6.5005 2.2800 1.3807 11 1 6.3978 0.2169 2.6503 12 1 6.5967 0.1453 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6326 -0.4342 16 6 0.0366 3.3386 -2.6545 17 7 -1.3220 3.8716 -2.5265 18 6 -1.6949 5.1532 -2.7484 19 6 -3.0266 5.2048 -2.5118 20 6 -3.9152 6.4172 -2.6186 21 6 -3.3720 7.6260 -3.3833 22 6 -4.4749 6.7634 -3.9999 23 7 -3.3999 3.9664 -2.1702 24 7 -2.3668 3.2003 -2.1883 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8293 -0.0611 2.9498 31 1 2.2719 2.1231 -1.9978 32 1 0.0680 2.6145 -3.4686 33 1 0.7281 4.1540 -2.8668 34 1 -1.0577 5.9712 -3.0509 35 1 -4.5506 6.6122 -1.7548 36 1 -3.6500 8.6162 -3.0224 37 1 -2.3720 7.5441 -3.8094 38 1 -4.2004 6.1141 -4.8313 39 1 -5.4788 7.1857 -4.0447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:34 Heat of formation + Delta-G solvation = 87.130353 kcal Electronic energy + Delta-G solvation = -21378.333650 eV Core-core repulsion = 18131.360404 eV Total energy + Delta-G solvation = -3246.973246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -43.15665 -39.22854 -37.43343 -35.34284 -34.15173 -32.53619 -31.09766 -30.64019 -28.64856 -26.77582 -24.10323 -23.29910 -22.77820 -21.91578 -20.79735 -20.13599 -19.49791 -17.75596 -17.30631 -16.30648 -15.83335 -15.57770 -15.23032 -14.88586 -14.67699 -14.53348 -14.13652 -13.31540 -13.01154 -12.73474 -12.38049 -11.94621 -11.77666 -11.55732 -11.44270 -11.30424 -11.15576 -11.06993 -10.88849 -10.85572 -10.44437 -10.37938 -10.24739 -10.08669 -9.67334 -9.18387 -9.12672 -8.95920 -8.57851 -7.99874 -6.19346 -4.30201 1.68604 2.31130 2.61273 3.04922 3.20060 3.26037 3.26671 3.61344 3.76239 4.16973 4.28262 4.57849 4.68450 4.72705 4.77616 4.89364 5.10748 5.11709 5.18459 5.31505 5.39769 5.60959 5.80549 5.87179 6.00053 6.19464 6.37616 6.44031 6.58645 6.63282 6.99367 7.14946 7.24053 7.33436 7.53214 7.61882 7.80365 8.10036 8.44663 8.64886 8.69421 8.90654 9.36958 10.85791 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035695 B = 0.003482 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.229532 B = 8038.865610 C = 8461.182087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.488 3.512 15 O -0.516 6.516 16 C 0.090 3.910 17 N -0.273 5.273 18 C -0.052 4.052 19 C 0.004 3.996 20 C -0.067 4.067 21 C -0.171 4.171 22 C -0.167 4.167 23 N -0.271 5.271 24 N -0.045 5.045 25 H 0.024 0.976 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.390 0.610 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.186 0.814 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 11.235 -13.383 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.350 5.350 14 C 0.269 3.731 15 O -0.392 6.392 16 C -0.036 4.036 17 N -0.066 5.066 18 C -0.202 4.202 19 C -0.134 4.134 20 C -0.087 4.087 21 C -0.209 4.209 22 C -0.204 4.204 23 N -0.138 5.138 24 N -0.024 5.024 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.203 0.797 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.798 9.672 -12.064 17.317 hybrid contribution 2.019 0.944 -0.546 2.295 sum -5.779 10.616 -12.610 17.467 Atomic orbital electron populations 1.21834 0.98033 0.98287 1.01339 1.21950 0.92756 0.99561 1.02394 1.18843 0.94289 0.89260 0.80398 0.93243 1.21153 0.90480 1.39588 1.06473 0.92062 1.24890 0.98699 0.94693 0.95342 1.69881 1.35342 1.37172 1.09302 0.86495 0.84670 0.78316 0.77544 1.20184 1.21079 1.20117 1.46438 1.13795 1.55784 1.19026 1.19967 0.83854 0.80884 0.88397 1.90812 1.50674 1.58436 1.39245 1.22069 0.78707 1.02092 1.00723 1.46761 1.09127 1.07217 1.43508 1.23191 0.97330 0.88779 1.10923 1.20933 0.91895 0.94322 1.06201 1.19960 1.00784 0.91095 0.96862 1.23009 0.99094 0.95123 1.03660 1.22988 0.98613 1.02949 0.95877 1.75076 1.20322 1.00959 1.17395 1.78475 0.88219 1.20619 1.15109 0.95706 0.93219 0.94172 0.94938 0.88203 0.92368 0.77758 0.85899 0.85315 0.79665 0.86143 0.88059 0.88622 0.88753 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.15 0.32 -2.79 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.56 16 9 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -13.04 5.02 -54.93 -0.28 -13.32 16 14 C 0.49 8.80 6.41 -10.98 -0.07 8.73 16 15 O -0.52 -11.86 12.82 5.56 0.07 -11.79 16 16 C 0.09 1.09 6.94 -5.19 -0.04 1.06 16 17 N -0.27 -4.09 3.20 -62.44 -0.20 -4.29 16 18 C -0.05 -0.65 10.89 -17.05 -0.19 -0.84 16 19 C 0.00 0.06 6.88 -82.78 -0.57 -0.51 16 20 C -0.07 -0.70 6.33 -91.77 -0.58 -1.28 16 21 C -0.17 -1.26 10.02 -26.73 -0.27 -1.53 16 22 C -0.17 -1.38 10.23 -26.73 -0.27 -1.65 16 23 N -0.27 -4.88 12.41 33.29 0.41 -4.47 16 24 N -0.04 -0.83 12.13 60.35 0.73 -0.10 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 27 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.65 5.95 -51.92 -0.31 2.34 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 5.88 8.54 -40.82 -0.35 5.53 16 32 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.13 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.19 1.49 7.45 -52.48 -0.39 1.10 16 35 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.62 7.23 -51.93 -0.38 0.25 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -33.44 327.00 -6.53 -39.97 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.44 Total: 5.48 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.36 Total: -7.80 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 1.30 Total: -45.74 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.44 -6.53 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.097 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds