Wall clock time and date at job start Tue Mar 31 2020 01:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 H 1.08999 * 109.46993 * 305.00261 * 3 2 1 5 5 C 1.50700 * 109.47212 * 185.00049 * 3 2 1 6 6 H 1.07999 * 119.99818 * 240.00146 * 5 3 2 7 7 C 1.37872 * 119.99964 * 60.00132 * 5 3 2 8 8 N 1.31521 * 120.00053 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00130 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47338 * 119.99613 * 9 7 5 12 12 H 1.48496 * 109.47398 * 239.99917 * 9 7 5 13 13 N 1.46505 * 109.46938 * 65.00057 * 3 2 1 14 14 C 1.34782 * 119.99575 * 275.00095 * 13 3 2 15 15 O 1.21271 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99381 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46672 * 179.97438 * 16 14 13 18 18 C 1.35316 * 125.86606 * 125.32549 * 17 16 14 19 19 C 1.35351 * 106.17602 * 180.11468 * 18 17 16 20 20 C 1.50690 * 126.75202 * 179.85417 * 19 18 17 21 21 C 1.53000 * 117.50063 * 84.71586 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 20 19 23 23 N 1.33773 * 106.49046 * 359.59343 * 19 18 17 24 24 N 1.28629 * 108.89215 * 0.26240 * 23 19 18 25 25 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47215 * 300.00078 * 1 2 3 27 27 H 1.08998 * 109.46898 * 60.00092 * 1 2 3 28 28 H 1.09001 * 109.47215 * 239.99922 * 2 1 3 29 29 H 1.09003 * 109.47175 * 120.00323 * 2 1 3 30 30 H 0.97004 * 119.99608 * 179.97438 * 8 7 5 31 31 H 0.96992 * 119.99857 * 95.00029 * 13 3 2 32 32 H 1.09002 * 109.47137 * 60.00101 * 16 14 13 33 33 H 1.08997 * 109.47070 * 299.99671 * 16 14 13 34 34 H 1.08005 * 126.90881 * 359.97438 * 18 17 16 35 35 H 1.09008 * 115.56062 * 230.40216 * 20 19 18 36 36 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49953 * 144.99860 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5461 -0.1942 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6166 -2.6103 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6319 0.4345 16 6 0.0367 3.3386 2.6545 17 7 -1.3218 3.8717 2.5265 18 6 -2.3591 3.6058 3.3537 19 6 -3.4159 4.2980 2.8680 20 6 -4.8109 4.3306 3.4369 21 6 -5.0908 5.3256 4.5650 22 6 -5.0018 3.8290 4.8704 23 7 -2.9768 4.9522 1.7868 24 7 -1.7323 4.6785 1.6114 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0612 -2.9499 31 1 2.2720 2.1231 1.9978 32 1 0.7282 4.1541 2.8667 33 1 0.0681 2.6146 3.4686 34 1 -2.3468 2.9675 4.2249 35 1 -5.6137 4.1378 2.7252 36 1 -4.2657 5.9564 4.8959 37 1 -6.0776 5.7876 4.5952 38 1 -4.1184 3.4755 5.4021 39 1 -5.9301 3.3065 5.1013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:44 Heat of formation + Delta-G solvation = 87.127535 kcal Electronic energy + Delta-G solvation = -21387.018417 eV Core-core repulsion = 18140.045049 eV Total energy + Delta-G solvation = -3246.973368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 5.17 seconds Orbital eigenvalues (eV) -43.15745 -39.23299 -37.43224 -35.35417 -34.15298 -32.53433 -31.14073 -30.64123 -28.66366 -26.78756 -24.10702 -23.31323 -22.79187 -21.93478 -20.81058 -20.14422 -19.51074 -17.74612 -17.30862 -16.36618 -15.80069 -15.50638 -15.33478 -14.91307 -14.64425 -14.52509 -14.10746 -13.33585 -13.04504 -12.76920 -12.43906 -11.92559 -11.78315 -11.57430 -11.46808 -11.34848 -11.16265 -11.03774 -10.91531 -10.86308 -10.44571 -10.37977 -10.29494 -10.07137 -9.73332 -9.18989 -9.12688 -8.96215 -8.58950 -8.00561 -6.19627 -4.29927 1.68519 2.30891 2.61218 3.04735 3.19195 3.27385 3.29290 3.60791 3.76514 4.16563 4.28653 4.57166 4.67886 4.72188 4.77093 4.90434 5.09759 5.12339 5.18326 5.31176 5.39317 5.60599 5.80406 5.86797 5.99758 6.19296 6.29315 6.33767 6.54893 6.58632 6.91423 7.09115 7.21992 7.28967 7.50654 7.61093 7.79423 8.08127 8.44426 8.65505 8.69447 8.90706 9.37361 10.85720 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042648 B = 0.003395 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.375323 B = 8244.859101 C = 8429.098164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.701 5.701 14 C 0.488 3.512 15 O -0.516 6.516 16 C 0.090 3.910 17 N -0.273 5.273 18 C -0.053 4.053 19 C 0.004 3.996 20 C -0.067 4.067 21 C -0.166 4.166 22 C -0.171 4.171 23 N -0.271 5.271 24 N -0.044 5.044 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.186 0.814 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 3.939 16.236 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.350 5.350 14 C 0.269 3.731 15 O -0.391 6.391 16 C -0.036 4.036 17 N -0.066 5.066 18 C -0.203 4.203 19 C -0.133 4.133 20 C -0.087 4.087 21 C -0.204 4.204 22 C -0.209 4.209 23 N -0.137 5.137 24 N -0.024 5.024 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.203 0.797 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.954 4.591 14.063 17.831 hybrid contribution 1.240 -0.842 1.228 1.937 sum -8.714 3.749 15.291 17.994 Atomic orbital electron populations 1.21832 0.98381 0.98130 1.01045 1.21949 0.92487 0.99723 1.02463 1.18859 0.94419 0.89126 0.80518 0.93089 1.21224 0.90454 1.39302 1.06476 0.91932 1.24894 0.98740 0.94715 0.95330 1.69903 1.35152 1.37392 1.09311 0.86380 0.84648 0.77796 0.78192 1.19726 1.20851 1.20820 1.46434 1.13812 1.55773 1.19027 1.19965 0.84014 0.80664 0.88431 1.90809 1.51001 1.58166 1.39167 1.22070 0.79604 1.01175 1.00745 1.46766 1.10325 1.31091 1.18409 1.23185 0.87871 1.07773 1.01442 1.20930 0.95499 1.00704 0.96198 1.19970 0.91855 1.05766 0.91117 1.22990 1.03178 0.92433 1.01807 1.23019 1.03533 0.97250 0.97100 1.75077 1.02253 1.21054 1.15362 1.78488 1.06648 1.07213 1.10051 0.95714 0.94733 0.93094 0.88100 0.94930 0.92495 0.77755 0.85809 0.85396 0.79693 0.86141 0.88746 0.88227 0.88632 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.18 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -13.04 5.02 -54.93 -0.28 -13.31 16 14 C 0.49 8.81 6.41 -10.98 -0.07 8.74 16 15 O -0.52 -11.86 12.81 5.57 0.07 -11.79 16 16 C 0.09 1.10 6.94 -5.19 -0.04 1.06 16 17 N -0.27 -4.09 3.20 -62.44 -0.20 -4.29 16 18 C -0.05 -0.65 10.89 -17.04 -0.19 -0.84 16 19 C 0.00 0.06 6.88 -82.78 -0.57 -0.51 16 20 C -0.07 -0.70 6.33 -91.74 -0.58 -1.28 16 21 C -0.17 -1.37 10.23 -26.73 -0.27 -1.65 16 22 C -0.17 -1.26 10.03 -26.69 -0.27 -1.52 16 23 N -0.27 -4.90 12.41 33.28 0.41 -4.49 16 24 N -0.04 -0.84 12.13 60.35 0.73 -0.10 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 5.88 8.54 -40.82 -0.35 5.53 16 32 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.13 0.99 8.07 -51.93 -0.42 0.57 16 34 H 0.19 1.47 7.45 -52.48 -0.39 1.08 16 35 H 0.12 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.61 7.23 -51.93 -0.38 0.24 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -33.51 327.01 -6.53 -40.03 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.44 Total: 5.15 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.36 Total: -7.62 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 1.30 Total: -45.76 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.51 -6.53 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.161 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.17 seconds