Wall clock time and date at job start Tue Mar 31 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47361 * 2 1 4 4 H 1.08999 * 109.46993 * 305.00261 * 3 2 1 5 5 C 1.50700 * 109.47212 * 185.00049 * 3 2 1 6 6 H 1.07999 * 119.99818 * 240.00146 * 5 3 2 7 7 C 1.37872 * 119.99964 * 60.00132 * 5 3 2 8 8 N 1.31521 * 120.00053 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00130 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47338 * 119.99613 * 9 7 5 12 12 H 1.48496 * 109.47398 * 239.99917 * 9 7 5 13 13 N 1.46505 * 109.46938 * 65.00057 * 3 2 1 14 14 C 1.34782 * 119.99575 * 275.00095 * 13 3 2 15 15 O 1.21271 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99381 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46672 * 179.97438 * 16 14 13 18 18 C 1.35316 * 125.86606 * 125.32549 * 17 16 14 19 19 C 1.35351 * 106.17602 * 180.11468 * 18 17 16 20 20 C 1.50690 * 126.75202 * 179.85417 * 19 18 17 21 21 C 1.53000 * 117.50063 * 84.71586 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 20 19 23 23 N 1.33773 * 106.49046 * 359.59343 * 19 18 17 24 24 N 1.28629 * 108.89215 * 0.26240 * 23 19 18 25 25 H 1.08997 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47215 * 300.00078 * 1 2 3 27 27 H 1.08998 * 109.46898 * 60.00092 * 1 2 3 28 28 H 1.09001 * 109.47215 * 239.99922 * 2 1 3 29 29 H 1.09003 * 109.47175 * 120.00323 * 2 1 3 30 30 H 0.97004 * 119.99608 * 179.97438 * 8 7 5 31 31 H 0.96992 * 119.99857 * 95.00029 * 13 3 2 32 32 H 1.09002 * 109.47137 * 60.00101 * 16 14 13 33 33 H 1.08997 * 109.47070 * 299.99671 * 16 14 13 34 34 H 1.08005 * 126.90881 * 359.97438 * 18 17 16 35 35 H 1.09008 * 115.56062 * 230.40216 * 20 19 18 36 36 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 37 37 H 1.09002 * 117.49953 * 144.99860 * 21 20 19 38 38 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 39 39 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5988 1.5461 -0.1942 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6166 -2.6103 13 7 1.6525 2.0975 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6319 0.4345 16 6 0.0367 3.3386 2.6545 17 7 -1.3218 3.8717 2.5265 18 6 -2.3591 3.6058 3.3537 19 6 -3.4159 4.2980 2.8680 20 6 -4.8109 4.3306 3.4369 21 6 -5.0908 5.3256 4.5650 22 6 -5.0018 3.8290 4.8704 23 7 -2.9768 4.9522 1.7868 24 7 -1.7323 4.6785 1.6114 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0612 -2.9499 31 1 2.2720 2.1231 1.9978 32 1 0.7282 4.1541 2.8667 33 1 0.0681 2.6146 3.4686 34 1 -2.3468 2.9675 4.2249 35 1 -5.6137 4.1378 2.7252 36 1 -4.2657 5.9564 4.8959 37 1 -6.0776 5.7876 4.5952 38 1 -4.1184 3.4755 5.4021 39 1 -5.9301 3.3065 5.1013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:39 Heat of formation + Delta-G solvation = 62.972521 kcal Electronic energy + Delta-G solvation = -21388.065857 eV Core-core repulsion = 18140.045049 eV Total energy + Delta-G solvation = -3248.020808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -44.24521 -40.75050 -38.14961 -37.06740 -35.35072 -34.35355 -32.91442 -31.65697 -30.00733 -28.50957 -25.12278 -24.99037 -23.74733 -22.95878 -22.02837 -21.44165 -21.07684 -19.19751 -18.39979 -17.91107 -17.10139 -16.84037 -16.67190 -16.25829 -15.97602 -15.47293 -15.30798 -14.76794 -14.61305 -14.39268 -13.67074 -13.43191 -13.20728 -13.09658 -12.89649 -12.72519 -12.50559 -12.27188 -12.19272 -12.11026 -12.04725 -11.76087 -11.62422 -11.28716 -11.11367 -11.06312 -10.66143 -10.52982 -9.94386 -9.70308 -8.17352 -6.34877 0.63414 1.33299 1.43880 1.45983 1.53273 1.56844 1.68147 2.32774 2.52874 2.92530 3.13002 3.32893 3.73638 3.84268 3.94911 4.01561 4.06366 4.10178 4.33575 4.44183 4.45518 4.52083 4.71506 4.82901 4.89336 5.01227 5.01715 5.21072 5.23951 5.26081 5.33841 5.39231 5.51889 5.58005 5.59360 5.76931 5.90135 6.14954 6.73967 6.88015 7.32109 7.51072 7.56993 8.88167 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042648 B = 0.003395 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.375323 B = 8244.859101 C = 8429.098164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.256 1.256 11 H -0.280 1.280 12 H -0.289 1.289 13 N -0.695 5.695 14 C 0.483 3.517 15 O -0.572 6.572 16 C 0.098 3.902 17 N -0.276 5.276 18 C -0.034 4.034 19 C -0.010 4.010 20 C -0.098 4.098 21 C -0.164 4.164 22 C -0.143 4.143 23 N -0.313 5.313 24 N -0.106 5.106 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.015 0.985 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.411 0.589 32 H 0.155 0.845 33 H 0.188 0.812 34 H 0.238 0.762 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 3.327 20.292 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.010 0.990 5 C -0.582 4.582 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.215 1.215 13 N -0.345 5.345 14 C 0.267 3.733 15 O -0.451 6.451 16 C -0.026 4.026 17 N -0.069 5.069 18 C -0.184 4.184 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.202 4.202 22 C -0.181 4.181 23 N -0.179 5.179 24 N -0.084 5.084 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.247 0.753 32 H 0.173 0.827 33 H 0.205 0.795 34 H 0.254 0.746 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.407 4.006 18.161 20.841 hybrid contribution 0.992 -0.636 -0.004 1.178 sum -8.415 3.371 18.157 20.294 Atomic orbital electron populations 1.21657 0.97321 0.98994 0.99873 1.21776 0.93291 0.99143 1.01626 1.18349 0.93698 0.89086 0.81181 0.99027 1.21617 0.91254 1.38651 1.06726 0.90420 1.25794 1.03290 0.94497 0.95125 1.70072 1.37047 1.38513 1.09933 0.85324 0.79183 0.77759 0.78218 1.17998 1.20543 1.21521 1.46079 1.14900 1.55639 1.17913 1.20919 0.82787 0.79571 0.89992 1.90806 1.52499 1.59936 1.41854 1.22317 0.79111 1.02953 0.98205 1.47013 1.11541 1.30333 1.18019 1.23983 0.86242 1.06547 1.01645 1.21617 0.97538 1.00342 0.95320 1.20065 0.89958 1.09224 0.92592 1.23055 1.03608 0.93298 1.00221 1.23185 1.05058 0.96200 0.93620 1.74991 1.02622 1.22739 1.17560 1.78428 1.07401 1.10028 1.12562 0.93623 0.93621 0.96529 0.91292 0.93189 0.92715 0.75283 0.82724 0.79514 0.74573 0.86918 0.89308 0.87014 0.86932 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.63 5.45 30.60 0.17 -5.47 16 3 C 0.28 13.69 2.24 44.24 0.10 13.79 16 4 H -0.01 -0.49 7.58 -2.39 -0.02 -0.51 16 5 C -0.54 -27.42 8.73 25.60 0.22 -27.20 16 6 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.68 5.29 84.65 0.45 1.12 16 8 N -0.92 -52.07 11.29 21.45 0.24 -51.82 16 9 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 10 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.69 -25.00 5.02 -446.08 -2.24 -27.24 16 14 C 0.48 16.94 6.41 87.66 0.56 17.50 16 15 O -0.57 -27.07 12.81 -3.00 -0.04 -27.11 16 16 C 0.10 2.04 6.94 85.63 0.59 2.64 16 17 N -0.28 -7.72 3.20 -351.45 -1.12 -8.84 16 18 C -0.03 -0.73 10.89 83.49 0.91 0.18 16 19 C -0.01 -0.26 6.88 41.59 0.29 0.02 16 20 C -0.10 -1.92 6.33 -11.52 -0.07 -1.99 16 21 C -0.16 -2.35 10.23 30.60 0.31 -2.04 16 22 C -0.14 -1.56 10.03 30.62 0.31 -1.25 16 23 N -0.31 -11.65 12.41 -48.61 -0.60 -12.26 16 24 N -0.11 -4.05 12.13 37.02 0.45 -3.60 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 27 H 0.02 0.80 7.85 -2.39 -0.02 0.78 16 28 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.41 11.22 8.54 -92.71 -0.79 10.43 16 32 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.19 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.24 2.31 7.45 -2.91 -0.02 2.29 16 35 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 0.85 7.23 -2.39 -0.02 0.83 16 39 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -80.63 327.01 3.44 -77.19 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.28 Total: 18.03 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.45 Total: -7.42 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.28 Total: -103.77 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.04 Total: -27.11 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -80.63 3.44 -77.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.165 kcal (2) G-P(sol) polarization free energy of solvation -80.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds