Wall clock time and date at job start Tue Mar 31 2020 00:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 120.00039 * 2 1 4 4 C 1.31002 * 120.00233 * 179.97438 * 2 1 3 5 5 C 1.50705 * 119.99553 * 5.46767 * 4 2 1 6 6 N 1.46498 * 109.46952 * 125.44477 * 5 4 2 7 7 C 1.34780 * 119.99669 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00365 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.40198 * 119.99709 * 179.97438 * 9 7 6 11 11 C 1.40400 * 125.97431 * 0.02562 * 10 9 7 12 12 C 1.35243 * 107.86745 * 179.71424 * 11 10 9 13 13 N 1.34969 * 107.85700 * 0.42230 * 12 11 10 14 14 C 1.46497 * 125.97684 * 179.83797 * 13 12 11 15 15 C 1.50701 * 109.47223 * 124.71227 * 14 13 12 16 16 H 1.08006 * 119.99825 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00119 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 359.72348 * 17 15 14 19 19 Si 1.86793 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47069 * 179.72104 * 19 17 15 21 21 H 1.48496 * 109.47325 * 299.72284 * 19 17 15 22 22 H 1.48503 * 109.47189 * 59.72774 * 19 17 15 23 23 N 1.31204 * 125.96943 * 179.97438 * 10 9 7 24 24 H 1.08998 * 109.47152 * 234.92067 * 1 2 3 25 25 H 1.09004 * 109.47119 * 354.92243 * 1 2 3 26 26 H 1.08999 * 109.47020 * 114.91833 * 1 2 3 27 27 H 1.09003 * 109.46725 * 269.99367 * 3 2 1 28 28 H 1.08995 * 109.47184 * 29.99332 * 3 2 1 29 29 H 1.08994 * 109.47102 * 149.99917 * 3 2 1 30 30 H 1.07994 * 120.00449 * 185.45979 * 4 2 1 31 31 H 1.09002 * 109.47367 * 5.44424 * 5 4 2 32 32 H 1.09004 * 109.46863 * 245.44377 * 5 4 2 33 33 H 0.96996 * 119.99979 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99892 * 0.02562 * 9 7 6 35 35 H 1.08001 * 126.06287 * 0.02562 * 11 10 9 36 36 H 1.07992 * 126.07013 * 180.25841 * 12 11 10 37 37 H 1.09011 * 109.46950 * 4.71688 * 14 13 12 38 38 H 1.08991 * 109.47620 * 244.71760 * 14 13 12 39 39 H 0.97006 * 119.99735 * 0.28357 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1233 6 7 1.9561 -3.2069 -1.2452 7 6 1.4383 -4.4142 -1.5466 8 8 0.5213 -4.8643 -0.8871 9 7 1.9370 -5.1226 -2.5791 10 6 1.3987 -6.3787 -2.8923 11 6 0.3445 -7.0155 -2.2183 12 6 0.1196 -8.2022 -2.8268 13 7 1.0017 -8.3206 -3.8415 14 6 1.1096 -9.4570 -4.7598 15 6 0.9945 -8.9675 -6.1805 16 1 0.8553 -7.9151 -6.3794 17 6 1.0668 -9.8632 -7.2262 18 7 1.2417 -11.1440 -6.9841 19 14 0.9248 -9.2564 -8.9871 20 1 1.0402 -10.4076 -9.9182 21 1 -0.3909 -8.5951 -9.1783 22 1 2.0125 -8.2842 -9.2649 23 7 1.7916 -7.1642 -3.8670 24 1 -0.3633 -0.5906 0.8410 25 1 -0.3633 1.0237 0.0910 26 1 -0.3633 -0.4330 -0.9320 27 1 2.4422 1.6196 -1.0277 28 1 1.6714 2.0648 0.5137 29 1 3.2129 1.1748 0.5138 30 1 3.2383 -1.1366 0.0895 31 1 0.3573 -2.2334 -0.2991 32 1 1.5251 -3.0088 0.7979 33 1 2.6878 -2.8480 -1.7711 34 1 2.6688 -4.7637 -3.1050 35 1 -0.1948 -6.6246 -1.3681 36 1 -0.6305 -8.9274 -2.5485 37 1 0.3088 -10.1675 -4.5543 38 1 2.0737 -9.9461 -4.6210 39 1 1.3157 -11.4590 -6.0696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192269592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:02 Heat of formation + Delta-G solvation = 60.832258 kcal Electronic energy + Delta-G solvation = -20387.963086 eV Core-core repulsion = 17139.849469 eV Total energy + Delta-G solvation = -3248.113617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74939 -39.61893 -37.38141 -34.82640 -34.32800 -33.58737 -30.88542 -29.37959 -29.06844 -28.11874 -26.21199 -24.41035 -23.00634 -21.63974 -20.53972 -19.98465 -18.64218 -17.62181 -17.15568 -16.79901 -15.99998 -15.62885 -15.08121 -14.69420 -14.57986 -14.21165 -14.04690 -13.79636 -13.73397 -13.18401 -12.92280 -12.74381 -12.38819 -12.29006 -12.18949 -11.97571 -11.78938 -11.27445 -11.13976 -10.79993 -10.43266 -10.15235 -10.13140 -9.73448 -9.40217 -9.06867 -8.93926 -8.56415 -8.14704 -7.44110 -6.56243 -4.30051 1.55580 2.52550 2.63074 3.08710 3.38743 3.40503 3.57899 3.62863 3.81593 4.32861 4.35063 4.43125 4.50888 4.86798 5.09065 5.13305 5.17219 5.17965 5.37261 5.42109 5.47458 5.51972 5.61064 5.68670 5.75037 6.16272 6.21236 6.25822 6.45736 6.49041 6.50354 6.68673 6.80137 7.01764 7.45710 7.65966 7.87829 7.94448 8.36869 8.58636 8.59176 8.66280 9.38070 10.81170 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.002801 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.836621 B = 9995.219062 C =10542.206763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.191 4.191 5 C 0.168 3.832 6 N -0.740 5.740 7 C 0.713 3.287 8 O -0.569 6.569 9 N -0.644 5.644 10 C 0.278 3.722 11 C -0.284 4.284 12 C 0.050 3.950 13 N -0.320 5.320 14 C 0.250 3.750 15 C -0.607 4.607 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.306 5.306 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.397 0.603 34 H 0.407 0.593 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 21.002 13.880 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C -0.177 4.177 4 C -0.210 4.210 5 C 0.044 3.956 6 N -0.397 5.397 7 C 0.412 3.588 8 O -0.444 6.444 9 N -0.294 5.294 10 C 0.024 3.976 11 C -0.315 4.315 12 C -0.100 4.100 13 N -0.101 5.101 14 C 0.132 3.868 15 C -0.645 4.645 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.541 5.541 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.212 1.212 23 N -0.137 5.137 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.242 0.758 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.432 19.829 11.886 23.163 hybrid contribution 0.264 0.931 1.765 2.013 sum 1.696 20.760 13.651 24.904 Atomic orbital electron populations 1.20960 0.92053 1.02635 1.02748 1.21747 0.96101 0.95016 0.97679 1.20905 0.99736 0.94678 1.02362 1.22662 0.99942 0.93138 1.05224 1.20188 0.97394 0.89089 0.88884 1.45000 1.40444 1.18385 1.35866 1.15628 0.82234 0.80464 0.80488 1.90861 1.30742 1.69866 1.52945 1.41388 1.38446 1.16579 1.32978 1.18791 0.96162 0.86721 0.95964 1.21528 1.05033 0.96628 1.08318 1.22554 0.96723 0.99257 0.91443 1.48754 1.23775 1.14162 1.23450 1.19741 0.97912 0.80597 0.88593 1.22108 1.55535 0.96949 0.89921 0.91867 1.25925 0.93268 0.93783 1.05283 1.70851 1.45250 1.14462 1.23505 0.83417 0.76761 0.75380 0.74044 1.20541 1.21251 1.21163 1.77338 1.19953 0.95796 1.20566 0.91012 0.91853 0.90936 0.91020 0.91740 0.91713 0.86632 0.90652 0.90904 0.76895 0.75840 0.82033 0.81548 0.93642 0.94826 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.55 36.01 0.31 -0.51 16 2 C -0.10 -0.69 6.05 -101.07 -0.61 -1.30 16 3 C -0.12 -0.61 9.98 36.01 0.36 -0.25 16 4 C -0.19 -1.36 9.22 -36.02 -0.33 -1.69 16 5 C 0.17 1.58 5.86 -5.19 -0.03 1.55 16 6 N -0.74 -7.78 5.55 -66.41 -0.37 -8.15 16 7 C 0.71 10.81 8.53 -86.91 -0.74 10.07 16 8 O -0.57 -10.52 13.47 5.29 0.07 -10.45 16 9 N -0.64 -10.31 5.46 -15.51 -0.08 -10.40 16 10 C 0.28 5.76 8.11 -154.36 -1.25 4.51 16 11 C -0.28 -5.82 9.61 -39.84 -0.38 -6.21 16 12 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.63 3.67 -62.56 -0.23 -7.86 16 14 C 0.25 6.42 5.57 -5.19 -0.03 6.39 16 15 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 16 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 17 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 18 N -0.91 -26.55 13.65 55.43 0.76 -25.79 16 19 Si 1.08 25.11 29.90 -169.99 -5.08 20.02 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 24 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 25 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 26 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.28 8.01 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.04 -51.93 -0.42 -0.12 16 30 H 0.12 0.71 8.02 -52.49 -0.42 0.28 16 31 H 0.08 0.76 5.88 -51.93 -0.31 0.45 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.06 8.48 -40.82 -0.35 2.72 16 34 H 0.41 5.26 8.84 -40.82 -0.36 4.90 16 35 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 36 H 0.17 2.79 8.06 -52.49 -0.42 2.37 16 37 H 0.05 1.13 7.94 -51.92 -0.41 0.71 16 38 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 39 H 0.27 7.66 7.22 -40.82 -0.29 7.37 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -34.22 334.97 -8.21 -42.44 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.39 Total: 5.66 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.32 Total: -3.68 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.46 Total: -59.04 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.22 -8.21 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192269592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.269 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds