Wall clock time and date at job start Tue Mar 31 2020 00:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50701 * 120.00039 * 2 1 4 4 C 1.31002 * 120.00233 * 179.97438 * 2 1 3 5 5 C 1.50705 * 119.99553 * 5.46767 * 4 2 1 6 6 N 1.46498 * 109.46952 * 125.44477 * 5 4 2 7 7 C 1.34780 * 119.99669 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00365 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.40198 * 119.99709 * 179.97438 * 9 7 6 11 11 C 1.40400 * 125.97431 * 0.02562 * 10 9 7 12 12 C 1.35243 * 107.86745 * 179.71424 * 11 10 9 13 13 N 1.34969 * 107.85700 * 0.42230 * 12 11 10 14 14 C 1.46497 * 125.97684 * 179.83797 * 13 12 11 15 15 C 1.50701 * 109.47223 * 124.71227 * 14 13 12 16 16 H 1.08006 * 119.99825 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00119 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99970 * 359.72348 * 17 15 14 19 19 Si 1.86793 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47069 * 179.72104 * 19 17 15 21 21 H 1.48496 * 109.47325 * 299.72284 * 19 17 15 22 22 H 1.48503 * 109.47189 * 59.72774 * 19 17 15 23 23 N 1.31204 * 125.96943 * 179.97438 * 10 9 7 24 24 H 1.08998 * 109.47152 * 234.92067 * 1 2 3 25 25 H 1.09004 * 109.47119 * 354.92243 * 1 2 3 26 26 H 1.08999 * 109.47020 * 114.91833 * 1 2 3 27 27 H 1.09003 * 109.46725 * 269.99367 * 3 2 1 28 28 H 1.08995 * 109.47184 * 29.99332 * 3 2 1 29 29 H 1.08994 * 109.47102 * 149.99917 * 3 2 1 30 30 H 1.07994 * 120.00449 * 185.45979 * 4 2 1 31 31 H 1.09002 * 109.47367 * 5.44424 * 5 4 2 32 32 H 1.09004 * 109.46863 * 245.44377 * 5 4 2 33 33 H 0.96996 * 119.99979 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99892 * 0.02562 * 9 7 6 35 35 H 1.08001 * 126.06287 * 0.02562 * 11 10 9 36 36 H 1.07992 * 126.07013 * 180.25841 * 12 11 10 37 37 H 1.09011 * 109.46950 * 4.71688 * 14 13 12 38 38 H 1.08991 * 109.47620 * 244.71760 * 14 13 12 39 39 H 0.97006 * 119.99735 * 0.28357 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4136 -2.4367 -0.1233 6 7 1.9561 -3.2069 -1.2452 7 6 1.4383 -4.4142 -1.5466 8 8 0.5213 -4.8643 -0.8871 9 7 1.9370 -5.1226 -2.5791 10 6 1.3987 -6.3787 -2.8923 11 6 0.3445 -7.0155 -2.2183 12 6 0.1196 -8.2022 -2.8268 13 7 1.0017 -8.3206 -3.8415 14 6 1.1096 -9.4570 -4.7598 15 6 0.9945 -8.9675 -6.1805 16 1 0.8553 -7.9151 -6.3794 17 6 1.0668 -9.8632 -7.2262 18 7 1.2417 -11.1440 -6.9841 19 14 0.9248 -9.2564 -8.9871 20 1 1.0402 -10.4076 -9.9182 21 1 -0.3909 -8.5951 -9.1783 22 1 2.0125 -8.2842 -9.2649 23 7 1.7916 -7.1642 -3.8670 24 1 -0.3633 -0.5906 0.8410 25 1 -0.3633 1.0237 0.0910 26 1 -0.3633 -0.4330 -0.9320 27 1 2.4422 1.6196 -1.0277 28 1 1.6714 2.0648 0.5137 29 1 3.2129 1.1748 0.5138 30 1 3.2383 -1.1366 0.0895 31 1 0.3573 -2.2334 -0.2991 32 1 1.5251 -3.0088 0.7979 33 1 2.6878 -2.8480 -1.7711 34 1 2.6688 -4.7637 -3.1050 35 1 -0.1948 -6.6246 -1.3681 36 1 -0.6305 -8.9274 -2.5485 37 1 0.3088 -10.1675 -4.5543 38 1 2.0737 -9.9461 -4.6210 39 1 1.3157 -11.4590 -6.0696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192269592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:01 Heat of formation + Delta-G solvation = 38.281231 kcal Electronic energy + Delta-G solvation = -20388.940972 eV Core-core repulsion = 17139.849469 eV Total energy + Delta-G solvation = -3249.091503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29993 -40.95057 -38.07546 -36.40906 -35.54257 -35.22293 -32.64530 -31.02168 -29.88165 -28.63676 -28.06689 -25.47166 -24.73082 -22.95711 -22.11549 -21.41073 -19.65590 -19.22930 -18.55354 -18.17867 -17.21046 -16.87670 -16.34516 -15.87486 -15.79042 -15.60753 -15.44609 -14.97524 -14.80462 -14.45746 -14.19090 -13.92429 -13.71890 -13.57024 -13.24100 -13.20114 -12.75155 -12.60887 -12.46121 -12.03154 -11.94986 -11.82199 -11.69959 -11.21971 -11.00367 -10.68992 -10.30764 -9.82485 -9.69101 -9.14285 -8.76411 -6.55191 0.82745 0.99859 1.33317 1.51344 1.57955 1.63908 1.79562 2.11609 2.35517 2.49299 3.01616 3.19552 3.77989 3.87425 4.02551 4.14772 4.31752 4.44252 4.56805 4.59291 4.70128 4.73775 4.78815 4.83648 4.86453 4.93258 4.99452 5.06988 5.13558 5.19718 5.40819 5.55320 5.69281 5.79901 5.85582 5.93328 5.95992 6.27801 6.42426 6.69347 7.07973 7.20575 7.39045 8.58824 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030400 B = 0.002801 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.836621 B = 9995.219062 C =10542.206763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.197 4.197 5 C 0.167 3.833 6 N -0.718 5.718 7 C 0.710 3.290 8 O -0.602 6.602 9 N -0.636 5.636 10 C 0.287 3.713 11 C -0.290 4.290 12 C 0.056 3.944 13 N -0.345 5.345 14 C 0.260 3.740 15 C -0.621 4.621 16 H 0.045 0.955 17 C -0.020 4.020 18 N -0.923 5.923 19 Si 1.120 2.880 20 H -0.275 1.275 21 H -0.271 1.271 22 H -0.275 1.275 23 N -0.347 5.347 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.421 0.579 35 H 0.169 0.831 36 H 0.202 0.798 37 H 0.054 0.946 38 H 0.017 0.983 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 22.971 14.086 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.177 4.177 4 C -0.215 4.215 5 C 0.044 3.956 6 N -0.374 5.374 7 C 0.410 3.590 8 O -0.481 6.481 9 N -0.288 5.288 10 C 0.031 3.969 11 C -0.321 4.321 12 C -0.092 4.092 13 N -0.127 5.127 14 C 0.140 3.860 15 C -0.659 4.659 16 H 0.063 0.937 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.200 1.200 23 N -0.178 5.178 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.251 0.749 34 H 0.259 0.741 35 H 0.186 0.814 36 H 0.219 0.781 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.548 21.861 12.124 25.045 hybrid contribution 0.222 0.450 1.850 1.917 sum 1.769 22.311 13.973 26.385 Atomic orbital electron populations 1.21001 0.92206 1.03366 1.02218 1.21978 0.96239 0.95667 0.96247 1.20943 0.99974 0.93832 1.02928 1.22563 1.00443 0.91913 1.06576 1.20261 0.97456 0.89935 0.87917 1.44907 1.40085 1.16599 1.35837 1.15808 0.81971 0.81346 0.79895 1.90830 1.32336 1.70937 1.53955 1.41391 1.38757 1.15196 1.33484 1.19099 0.95532 0.87628 0.94657 1.21709 1.05186 0.96720 1.08522 1.23170 0.96231 0.99909 0.89938 1.48557 1.25378 1.14252 1.24506 1.19418 0.97160 0.81389 0.88005 1.22287 1.55762 0.96126 0.91721 0.93675 1.27292 0.92203 0.93410 1.09046 1.70948 1.46565 1.15176 1.23223 0.82875 0.77747 0.75395 0.69878 1.19980 1.19657 1.20036 1.77256 1.21439 0.96599 1.22521 0.91196 0.90602 0.91784 0.90462 0.90949 0.90994 0.85226 0.91365 0.91646 0.74949 0.74146 0.81407 0.78136 0.92813 0.96561 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.55 71.24 0.61 -0.89 16 2 C -0.10 -1.12 6.05 -16.49 -0.10 -1.22 16 3 C -0.12 -0.91 9.98 71.24 0.71 -0.20 16 4 C -0.20 -2.40 9.22 25.65 0.24 -2.16 16 5 C 0.17 2.93 5.86 85.63 0.50 3.43 16 6 N -0.72 -13.92 5.55 -482.28 -2.68 -16.60 16 7 C 0.71 20.78 8.53 179.05 1.53 22.31 16 8 O -0.60 -21.91 13.47 -3.98 -0.05 -21.97 16 9 N -0.64 -19.80 5.46 -321.23 -1.75 -21.55 16 10 C 0.29 11.79 8.11 133.31 1.08 12.87 16 11 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 12 C 0.06 2.25 11.44 83.52 0.96 3.20 16 13 N -0.35 -16.57 3.67 -351.85 -1.29 -17.86 16 14 C 0.26 13.55 5.57 85.63 0.48 14.03 16 15 C -0.62 -35.71 9.24 25.60 0.24 -35.47 16 16 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 17 C -0.02 -1.12 5.46 84.65 0.46 -0.66 16 18 N -0.92 -54.33 13.65 21.45 0.29 -54.03 16 19 Si 1.12 49.98 29.90 68.60 2.05 52.04 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 N -0.35 -16.54 12.42 -54.44 -0.68 -17.22 16 24 H 0.07 0.82 7.84 -2.39 -0.02 0.80 16 25 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 26 H 0.06 0.85 7.67 -2.39 -0.02 0.83 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.45 8.01 -2.39 -0.02 0.43 16 29 H 0.07 0.46 8.04 -2.39 -0.02 0.44 16 30 H 0.13 1.24 8.02 -2.91 -0.02 1.21 16 31 H 0.07 1.32 5.88 -2.39 -0.01 1.31 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.41 5.45 8.48 -92.71 -0.79 4.66 16 34 H 0.42 10.39 8.84 -92.71 -0.82 9.57 16 35 H 0.17 6.62 5.91 -2.91 -0.02 6.61 16 36 H 0.20 6.40 8.06 -2.91 -0.02 6.37 16 37 H 0.05 2.69 7.94 -2.38 -0.02 2.67 16 38 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 39 H 0.26 15.18 7.22 -92.70 -0.67 14.51 16 Total: -1.00 -73.39 334.97 2.38 -71.01 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -0.43 Total: 22.48 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.91 Total: 3.72 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -6.10 Total: -127.27 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.04 kcal Total: -73.39 2.38 -71.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192269592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.289 kcal (2) G-P(sol) polarization free energy of solvation -73.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds