Wall clock time and date at job start Tue Mar 31 2020 00:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47332 * 2 1 4 4 C 1.39674 * 126.06392 * 125.00144 * 3 2 1 5 5 C 1.38408 * 105.35488 * 180.24779 * 4 3 2 6 6 C 1.47160 * 126.88320 * 179.77528 * 5 4 3 7 7 O 1.21637 * 119.99963 * 42.74433 * 6 5 4 8 8 N 1.34778 * 120.00215 * 222.74487 * 6 5 4 9 9 C 1.46965 * 120.59242 * 5.48060 * 8 6 5 10 10 C 1.53814 * 108.39489 * 124.75851 * 9 8 6 11 11 N 1.46964 * 108.57963 * 49.64004 * 10 9 8 12 12 C 1.36941 * 120.59217 * 124.66530 * 11 10 9 13 13 H 1.08002 * 119.99907 * 208.54241 * 12 11 10 14 14 C 1.38815 * 119.99931 * 28.55004 * 12 11 10 15 15 N 1.31615 * 119.99998 * 16.91099 * 14 12 11 16 16 Si 1.86795 * 119.99640 * 196.91627 * 14 12 11 17 17 H 1.48503 * 109.47501 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47193 * 119.99756 * 16 14 12 19 19 H 1.48501 * 109.47247 * 239.99604 * 16 14 12 20 20 C 1.46963 * 118.81050 * 304.64456 * 11 10 9 21 21 C 1.46964 * 120.59572 * 185.76352 * 8 6 5 22 22 N 1.36601 * 106.23449 * 359.64530 * 5 4 3 23 23 H 0.96995 * 125.19178 * 180.13922 * 22 5 4 24 24 N 1.28447 * 109.61384 * 0.37290 * 22 5 4 25 25 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46406 * 300.00071 * 1 2 3 27 27 H 1.09000 * 109.46746 * 59.99784 * 1 2 3 28 28 H 1.09001 * 109.47106 * 240.00140 * 2 1 3 29 29 H 1.09007 * 109.47126 * 120.00263 * 2 1 3 30 30 H 1.08002 * 127.32631 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.61061 * 244.54412 * 9 8 6 32 32 H 1.08996 * 109.60757 * 5.05796 * 9 8 6 33 33 H 1.09001 * 109.74595 * 289.84766 * 10 9 8 34 34 H 1.09006 * 109.52815 * 169.30679 * 10 9 8 35 35 H 0.96999 * 119.99347 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.61209 * 295.48218 * 20 11 10 37 37 H 1.09004 * 109.74991 * 175.05538 * 20 11 10 38 38 H 1.08996 * 109.61161 * 354.95087 * 21 8 6 39 39 H 1.09001 * 109.61048 * 115.45471 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9171 1.9801 0.9249 5 6 3.0796 3.2959 0.5273 6 6 3.9149 4.3183 1.1773 7 8 5.0298 4.0326 1.5708 8 7 3.4446 5.5712 1.3367 9 6 2.0586 5.9013 0.9763 10 6 1.3728 6.5239 2.2043 11 7 2.2386 7.5859 2.7359 12 6 1.7606 8.8589 2.8977 13 1 2.4342 9.7008 2.8341 14 6 0.4104 9.0674 3.1437 15 7 -0.3462 8.0697 3.5492 16 14 -0.3324 10.7637 2.8992 17 1 0.7216 11.7044 2.4414 18 1 -1.4076 10.6907 1.8774 19 1 -0.9020 11.2446 4.1835 20 6 3.6262 7.2570 3.0910 21 6 4.3103 6.6332 1.8682 22 7 2.3115 3.4545 -0.5912 23 1 2.2253 4.2769 -1.0981 24 7 1.7169 2.3496 -0.8661 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3736 1.4913 1.7729 31 1 2.0549 6.6138 0.1514 32 1 1.5312 4.9941 0.6817 33 1 1.2199 5.7605 2.9672 34 1 0.4127 6.9477 1.9097 35 1 -1.2896 8.2156 3.7214 36 1 3.6338 6.5458 3.9169 37 1 4.1562 8.1634 3.3839 38 1 5.2704 6.2094 2.1627 39 1 4.4633 7.3966 1.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266640077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:48 Heat of formation + Delta-G solvation = 65.873692 kcal Electronic energy + Delta-G solvation = -21961.005562 eV Core-core repulsion = 18713.110558 eV Total energy + Delta-G solvation = -3247.895004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.55310 -39.45706 -36.90885 -34.53842 -33.93377 -31.72258 -30.81897 -30.41999 -29.79962 -27.12189 -24.47145 -24.04135 -23.20453 -22.35259 -20.85240 -20.01662 -19.39995 -17.99409 -16.60209 -16.10189 -15.70304 -15.57039 -14.82893 -14.63513 -14.19834 -14.05902 -13.76258 -13.64611 -13.57589 -13.37830 -13.30231 -12.52650 -12.30833 -11.81049 -11.56683 -11.45277 -11.35452 -10.94370 -10.86576 -10.63534 -10.55186 -10.35691 -10.16015 -9.96741 -9.77606 -9.08374 -9.03731 -8.70088 -8.43348 -6.81948 -5.94355 -3.39752 1.48573 2.55004 2.75116 2.99823 3.27796 3.36457 3.38331 3.43243 4.36479 4.44672 4.63359 4.89849 5.11814 5.22342 5.24152 5.29873 5.48798 5.58926 5.60377 5.68644 5.77443 5.79691 5.86487 5.90583 6.02083 6.04131 6.17934 6.20511 6.27222 6.49780 6.67267 6.77712 6.98470 7.06588 7.33326 7.61136 7.67434 8.01311 8.25954 8.26815 9.02645 9.64996 10.21759 11.13673 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004701 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.824377 B = 5955.152217 C = 6847.492489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 C 0.029 3.971 4 C -0.169 4.169 5 C -0.015 4.015 6 C 0.581 3.419 7 O -0.537 6.537 8 N -0.589 5.589 9 C 0.070 3.930 10 C 0.161 3.839 11 N -0.591 5.591 12 C -0.258 4.258 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.131 3.869 21 C 0.096 3.904 22 N -0.377 5.377 23 H 0.446 0.554 24 N -0.276 5.276 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.256 0.744 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -11.080 -7.655 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 C -0.129 4.129 4 C -0.197 4.197 5 C -0.144 4.144 6 C 0.367 3.633 7 O -0.413 6.413 8 N -0.321 5.321 9 C -0.054 4.054 10 C 0.034 3.966 11 N -0.313 5.313 12 C -0.388 4.388 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.734 3.266 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.216 1.216 20 C 0.004 3.996 21 C -0.028 4.028 22 N -0.093 5.093 23 H 0.291 0.709 24 N -0.109 5.109 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.065 -10.972 -8.314 14.103 hybrid contribution -0.163 1.257 0.395 1.327 sum 2.902 -9.715 -7.920 12.866 Atomic orbital electron populations 1.21726 0.94543 1.01553 1.02688 1.19862 0.96200 0.88441 1.02943 1.21985 0.99937 0.96717 0.94302 1.21976 1.03140 0.91797 1.02826 1.21710 1.01459 0.97157 0.94070 1.17142 0.85351 0.81241 0.79602 1.90792 1.19563 1.79693 1.51294 1.48071 1.13687 1.08279 1.62085 1.22971 0.80947 0.99745 1.01755 1.21219 0.94969 0.90166 0.90244 1.43998 1.07098 1.07402 1.72837 1.19258 0.92643 0.83260 1.43606 0.91283 1.25097 0.97955 0.97487 0.98891 1.70014 1.06297 1.30947 1.47301 0.86195 0.79087 0.83741 0.77566 1.20137 1.21449 1.21568 1.21307 0.87359 0.98000 0.92972 1.22308 0.93796 0.88611 0.98064 1.43816 1.32695 1.11336 1.21471 0.70851 1.73018 1.18980 0.93111 1.25745 0.92420 0.92497 0.92111 0.90566 0.90066 0.82266 0.91418 0.91304 0.95572 0.88014 0.93422 0.95626 0.91232 0.89605 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.88 37.16 0.37 -1.01 16 2 C -0.04 -0.34 6.51 -27.88 -0.18 -0.53 16 3 C 0.03 0.38 6.49 -82.47 -0.54 -0.15 16 4 C -0.17 -2.42 10.95 -38.98 -0.43 -2.85 16 5 C -0.01 -0.23 5.87 -82.06 -0.48 -0.71 16 6 C 0.58 10.25 7.62 -12.64 -0.10 10.15 16 7 O -0.54 -10.78 16.51 5.25 0.09 -10.69 16 8 N -0.59 -10.32 2.94 -173.58 -0.51 -10.83 16 9 C 0.07 1.22 5.93 -3.36 -0.02 1.20 16 10 C 0.16 3.59 5.52 -3.37 -0.02 3.57 16 11 N -0.59 -14.00 2.97 -171.76 -0.51 -14.51 16 12 C -0.26 -6.70 9.58 -15.06 -0.14 -6.85 16 13 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 14 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 15 N -0.90 -25.03 11.19 55.49 0.62 -24.41 16 16 Si 0.90 20.68 29.59 -169.99 -5.03 15.66 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.13 2.64 6.67 -3.60 -0.02 2.62 16 21 C 0.10 1.68 6.60 -3.60 -0.02 1.65 16 22 N -0.38 -5.10 5.56 33.48 0.19 -4.91 16 23 H 0.45 5.02 8.10 -190.46 -1.54 3.47 16 24 N -0.28 -3.83 12.11 33.64 0.41 -3.43 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.08 5.14 -51.93 -0.27 0.81 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 2.51 6.00 -51.93 -0.31 2.20 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 38 H 0.09 1.46 6.99 -51.93 -0.36 1.09 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -30.66 320.41 -8.26 -38.92 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.67 Total: 2.24 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.67 Total: 7.14 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.19 Total: -58.09 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.66 -8.26 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266640077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.794 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds