Wall clock time and date at job start Tue Mar 31 2020 00:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47332 * 2 1 4 4 C 1.39674 * 126.06392 * 125.00144 * 3 2 1 5 5 C 1.38408 * 105.35488 * 180.24779 * 4 3 2 6 6 C 1.47160 * 126.88320 * 179.77528 * 5 4 3 7 7 O 1.21637 * 119.99963 * 42.74433 * 6 5 4 8 8 N 1.34778 * 120.00215 * 222.74487 * 6 5 4 9 9 C 1.46965 * 120.59242 * 5.48060 * 8 6 5 10 10 C 1.53814 * 108.39489 * 124.75851 * 9 8 6 11 11 N 1.46964 * 108.57963 * 49.64004 * 10 9 8 12 12 C 1.36941 * 120.59217 * 124.66530 * 11 10 9 13 13 H 1.08002 * 119.99907 * 208.54241 * 12 11 10 14 14 C 1.38815 * 119.99931 * 28.55004 * 12 11 10 15 15 N 1.31615 * 119.99998 * 16.91099 * 14 12 11 16 16 Si 1.86795 * 119.99640 * 196.91627 * 14 12 11 17 17 H 1.48503 * 109.47501 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47193 * 119.99756 * 16 14 12 19 19 H 1.48501 * 109.47247 * 239.99604 * 16 14 12 20 20 C 1.46963 * 118.81050 * 304.64456 * 11 10 9 21 21 C 1.46964 * 120.59572 * 185.76352 * 8 6 5 22 22 N 1.36601 * 106.23449 * 359.64530 * 5 4 3 23 23 H 0.96995 * 125.19178 * 180.13922 * 22 5 4 24 24 N 1.28447 * 109.61384 * 0.37290 * 22 5 4 25 25 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46406 * 300.00071 * 1 2 3 27 27 H 1.09000 * 109.46746 * 59.99784 * 1 2 3 28 28 H 1.09001 * 109.47106 * 240.00140 * 2 1 3 29 29 H 1.09007 * 109.47126 * 120.00263 * 2 1 3 30 30 H 1.08002 * 127.32631 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.61061 * 244.54412 * 9 8 6 32 32 H 1.08996 * 109.60757 * 5.05796 * 9 8 6 33 33 H 1.09001 * 109.74595 * 289.84766 * 10 9 8 34 34 H 1.09006 * 109.52815 * 169.30679 * 10 9 8 35 35 H 0.96999 * 119.99347 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.61209 * 295.48218 * 20 11 10 37 37 H 1.09004 * 109.74991 * 175.05538 * 20 11 10 38 38 H 1.08996 * 109.61161 * 354.95087 * 21 8 6 39 39 H 1.09001 * 109.61048 * 115.45471 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9171 1.9801 0.9249 5 6 3.0796 3.2959 0.5273 6 6 3.9149 4.3183 1.1773 7 8 5.0298 4.0326 1.5708 8 7 3.4446 5.5712 1.3367 9 6 2.0586 5.9013 0.9763 10 6 1.3728 6.5239 2.2043 11 7 2.2386 7.5859 2.7359 12 6 1.7606 8.8589 2.8977 13 1 2.4342 9.7008 2.8341 14 6 0.4104 9.0674 3.1437 15 7 -0.3462 8.0697 3.5492 16 14 -0.3324 10.7637 2.8992 17 1 0.7216 11.7044 2.4414 18 1 -1.4076 10.6907 1.8774 19 1 -0.9020 11.2446 4.1835 20 6 3.6262 7.2570 3.0910 21 6 4.3103 6.6332 1.8682 22 7 2.3115 3.4545 -0.5912 23 1 2.2253 4.2769 -1.0981 24 7 1.7169 2.3496 -0.8661 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3736 1.4913 1.7729 31 1 2.0549 6.6138 0.1514 32 1 1.5312 4.9941 0.6817 33 1 1.2199 5.7605 2.9672 34 1 0.4127 6.9477 1.9097 35 1 -1.2896 8.2156 3.7214 36 1 3.6338 6.5458 3.9169 37 1 4.1562 8.1634 3.3839 38 1 5.2704 6.2094 2.1627 39 1 4.4633 7.3966 1.1054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266640077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:48 Heat of formation + Delta-G solvation = 46.382521 kcal Electronic energy + Delta-G solvation = -21961.850763 eV Core-core repulsion = 18713.110558 eV Total energy + Delta-G solvation = -3248.740204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.65348 -40.90196 -38.53453 -35.82873 -35.24290 -33.40781 -32.20880 -31.79993 -30.94851 -28.81546 -25.99905 -25.06375 -24.78457 -23.80478 -22.15458 -21.28576 -20.65788 -19.49783 -18.20346 -17.61332 -16.97808 -16.86643 -16.59313 -15.97822 -15.54254 -15.32081 -15.17747 -15.11239 -14.90954 -14.73181 -14.53768 -14.03311 -13.40031 -13.28465 -13.16320 -12.74098 -12.55959 -12.37917 -12.25537 -12.19978 -12.10251 -11.98067 -11.73780 -11.55624 -11.23458 -10.65564 -10.23625 -10.10484 -9.95626 -8.72282 -7.92780 -5.41684 0.27656 1.42412 1.46909 1.49980 1.59512 1.63490 1.67717 2.17245 2.49153 3.22560 3.24263 3.50488 3.59043 3.99724 4.05069 4.13887 4.24509 4.35574 4.40639 4.48758 4.53790 4.56367 4.67051 4.70256 4.74375 4.89952 5.00929 5.14163 5.15155 5.25810 5.38704 5.39948 5.50409 5.52831 5.61496 5.97173 6.21132 6.31587 6.82061 6.97628 7.06295 7.73571 8.27235 9.13226 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004701 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.824377 B = 5955.152217 C = 6847.492489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.029 3.971 4 C -0.174 4.174 5 C -0.035 4.035 6 C 0.587 3.413 7 O -0.563 6.563 8 N -0.591 5.591 9 C 0.090 3.910 10 C 0.167 3.833 11 N -0.607 5.607 12 C -0.265 4.265 13 H 0.074 0.926 14 C -0.045 4.045 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.296 1.296 20 C 0.130 3.870 21 C 0.105 3.895 22 N -0.369 5.369 23 H 0.454 0.546 24 N -0.281 5.281 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.086 0.914 32 H 0.086 0.914 33 H -0.005 1.005 34 H 0.077 0.923 35 H 0.252 0.748 36 H 0.009 0.991 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -11.558 -8.983 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.203 4.203 5 C -0.165 4.165 6 C 0.373 3.627 7 O -0.441 6.441 8 N -0.323 5.323 9 C -0.034 4.034 10 C 0.040 3.960 11 N -0.330 5.330 12 C -0.395 4.395 13 H 0.091 0.909 14 C -0.240 4.240 15 N -0.581 5.581 16 Si 0.797 3.203 17 H -0.189 1.189 18 H -0.215 1.215 19 H -0.223 1.223 20 C 0.003 3.997 21 C -0.018 4.018 22 N -0.087 5.087 23 H 0.302 0.698 24 N -0.115 5.115 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.187 0.813 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.013 0.987 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.437 -11.445 -9.666 15.370 hybrid contribution -0.246 1.341 0.858 1.611 sum 3.191 -10.104 -8.808 13.779 Atomic orbital electron populations 1.21701 0.94303 1.02704 1.01516 1.20046 0.96310 0.86560 1.04590 1.22530 0.99142 0.97966 0.93319 1.22288 1.03182 0.91532 1.03297 1.21505 1.02573 0.97120 0.95263 1.17327 0.85131 0.81215 0.78977 1.90772 1.20809 1.80055 1.52507 1.48086 1.13574 1.08501 1.62122 1.22689 0.80569 1.00560 0.99551 1.21010 0.94599 0.89125 0.91285 1.44250 1.08308 1.07107 1.73361 1.19592 0.92929 0.84384 1.42600 0.90853 1.25815 0.98415 1.00672 0.99146 1.70166 1.06218 1.32855 1.48868 0.85195 0.78267 0.80012 0.76852 1.18888 1.21476 1.22285 1.21396 0.86104 0.98289 0.93862 1.22182 0.93563 0.88894 0.97157 1.43818 1.32143 1.11753 1.20962 0.69830 1.73035 1.19012 0.93364 1.26051 0.90160 0.93744 0.93157 0.89084 0.88248 0.81289 0.89578 0.89579 0.98700 0.90502 0.93891 0.97338 0.90240 0.88844 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.88 71.98 0.71 -1.69 16 2 C -0.04 -0.61 6.51 29.85 0.19 -0.42 16 3 C 0.03 0.70 6.49 43.05 0.28 0.98 16 4 C -0.17 -4.75 10.95 22.66 0.25 -4.50 16 5 C -0.04 -1.05 5.87 40.79 0.24 -0.81 16 6 C 0.59 20.07 7.62 86.59 0.66 20.73 16 7 O -0.56 -22.13 16.51 -4.15 -0.07 -22.19 16 8 N -0.59 -20.03 2.94 -821.34 -2.42 -22.45 16 9 C 0.09 3.04 5.93 86.56 0.51 3.55 16 10 C 0.17 7.54 5.52 86.57 0.48 8.01 16 11 N -0.61 -28.85 2.97 -697.34 -2.07 -30.92 16 12 C -0.27 -13.72 9.58 84.03 0.80 -12.91 16 13 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 14 C -0.04 -2.37 4.92 84.86 0.42 -1.95 16 15 N -0.94 -53.00 11.19 21.65 0.24 -52.76 16 16 Si 0.97 42.57 29.59 68.60 2.03 44.60 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 20 C 0.13 5.21 6.67 86.41 0.58 5.79 16 21 C 0.11 3.54 6.60 86.41 0.57 4.11 16 22 N -0.37 -9.39 5.56 -47.99 -0.27 -9.66 16 23 H 0.45 9.40 8.10 -220.01 -1.78 7.62 16 24 N -0.28 -7.34 12.11 -47.50 -0.58 -7.92 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.32 8.12 -2.38 -0.02 1.30 16 30 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.09 2.61 5.14 -2.39 -0.01 2.59 16 33 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.08 3.88 6.00 -2.38 -0.01 3.86 16 35 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.08 2.98 7.94 -2.39 -0.02 2.97 16 38 H 0.09 3.04 6.99 -2.39 -0.02 3.02 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -65.54 320.41 1.85 -63.68 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -0.72 Total: 16.71 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 5.69 Total: 20.90 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -5.08 Total: -123.70 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -65.54 1.85 -63.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266640077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.065 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds