Wall clock time and date at job start Mon Mar 30 2020 23:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29951 * 126.28673 * 2 1 4 4 O 1.21302 * 110.25024 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.81367 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.55019 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46950 * 269.97293 * 6 5 4 8 8 C 1.53000 * 109.47012 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00086 * 189.99749 * 9 8 7 11 11 C 1.50700 * 109.47177 * 168.87124 * 10 9 8 12 12 H 1.08000 * 120.00021 * 354.99168 * 11 10 9 13 13 C 1.37881 * 120.00100 * 174.99113 * 11 10 9 14 14 N 1.31512 * 119.99770 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99943 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47554 * 59.99873 * 15 13 11 17 17 H 1.48500 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46969 * 299.99651 * 15 13 11 19 19 C 1.46899 * 110.99715 * 66.04406 * 9 8 7 20 20 C 1.52997 * 109.47511 * 61.47488 * 19 9 8 21 21 C 1.47198 * 109.47713 * 179.44598 * 20 19 9 22 22 N 8.76656 * 151.34089 * 287.43150 * 2 1 3 23 23 N 1.31127 * 106.89328 * 359.97438 * 5 4 3 24 24 H 1.09005 * 109.47004 * 89.98486 * 1 2 3 25 25 H 1.09002 * 109.47024 * 209.97395 * 1 2 3 26 26 H 1.08999 * 109.47500 * 329.97775 * 1 2 3 27 27 H 1.09002 * 109.47599 * 29.96996 * 6 5 4 28 28 H 1.08996 * 109.47196 * 149.97159 * 6 5 4 29 29 H 1.09004 * 109.46917 * 299.99724 * 7 6 5 30 30 H 1.08996 * 109.47281 * 59.99917 * 7 6 5 31 31 H 1.08996 * 109.47289 * 299.99112 * 8 7 6 32 32 H 1.08996 * 109.47454 * 59.99670 * 8 7 6 33 33 H 1.09007 * 109.47516 * 288.87117 * 10 9 8 34 34 H 1.08996 * 109.47157 * 48.86970 * 10 9 8 35 35 H 0.97001 * 119.99527 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47143 * 181.47494 * 19 9 8 37 37 H 1.09004 * 109.47476 * 301.47165 * 19 9 8 38 38 H 1.09008 * 109.46970 * 299.44675 * 20 19 9 39 39 H 1.08997 * 109.47231 * 59.44129 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0015 6 6 4.7969 -1.4369 0.0029 7 6 5.2263 -1.7145 -1.4392 8 6 6.5124 -2.5432 -1.4378 9 7 6.9244 -2.8103 -2.8224 10 6 8.0133 -3.7952 -2.8670 11 6 8.2237 -4.2474 -4.2890 12 1 7.5586 -3.9058 -5.0683 13 6 9.2655 -5.0971 -4.5953 14 7 10.0758 -5.5126 -3.6464 15 14 9.5267 -5.6570 -6.3581 16 1 9.7628 -4.4737 -7.2236 17 1 10.7047 -6.5590 -6.4216 18 1 8.3206 -6.3832 -6.8307 19 6 7.3096 -1.5683 -3.5058 20 6 8.5023 -0.9378 -2.7841 21 6 8.8968 0.2997 -3.4767 22 7 9.1995 1.2595 -4.0113 23 7 2.3030 -1.0840 0.0020 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8898 0.5142 27 1 5.5841 -0.8847 0.5164 28 1 4.6205 -2.3813 0.5176 29 1 4.4393 -2.2667 -1.9527 30 1 5.4028 -0.7701 -1.9539 31 1 7.2997 -1.9914 -0.9242 32 1 6.3356 -3.4876 -0.9231 33 1 8.9300 -3.3408 -2.4908 34 1 7.7526 -4.6534 -2.2476 35 1 10.8089 -6.1101 -3.8620 36 1 7.5851 -1.7912 -4.5365 37 1 6.4703 -0.8729 -3.4963 38 1 8.2237 -0.7058 -1.7561 39 1 9.3385 -1.6369 -2.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268646754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:41 Heat of formation + Delta-G solvation = 86.895594 kcal Electronic energy + Delta-G solvation = -20827.474548 eV Core-core repulsion = 17580.491122 eV Total energy + Delta-G solvation = -3246.983426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.69674 -38.23444 -36.29982 -36.00956 -34.88793 -32.79765 -31.95364 -30.26485 -29.36626 -27.69865 -25.65451 -24.19144 -23.60402 -22.07614 -21.09639 -19.70363 -18.20290 -17.51295 -17.46833 -16.32578 -15.80943 -15.25030 -14.90900 -14.62787 -14.29099 -13.90966 -13.80991 -13.74975 -13.48044 -13.12225 -12.71936 -12.52325 -12.43774 -12.08721 -12.04667 -11.77940 -11.48481 -11.40683 -11.36993 -11.14637 -11.07551 -10.76614 -10.73766 -10.58607 -10.18340 -10.00973 -9.82414 -9.32648 -8.50869 -7.43998 -6.11160 -4.12703 1.01686 2.07960 2.69091 3.05452 3.08403 3.30270 3.34973 3.37881 3.49152 3.88670 4.26769 4.38485 4.64687 4.74743 4.88092 5.10596 5.15076 5.18632 5.21192 5.25323 5.39098 5.47623 5.50141 5.55606 5.66204 5.68924 5.74931 5.87267 5.95529 6.20594 6.24956 6.34827 6.58686 7.12016 7.18517 7.69942 7.83920 7.95081 8.02556 8.04044 8.39853 8.95083 9.52738 10.99043 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.003550 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.918077 B = 7885.242856 C = 8691.557364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.165 3.835 3 N -0.392 5.392 4 O 0.074 5.926 5 C 0.195 3.805 6 C -0.029 4.029 7 C -0.115 4.115 8 C 0.050 3.950 9 N -0.528 5.528 10 C 0.187 3.813 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.069 3.931 20 C -0.074 4.074 21 C 0.223 3.777 22 N -0.462 5.462 23 N -0.484 5.484 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.005 0.995 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 7.591 9.923 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.101 5.101 4 O 0.016 5.984 5 C -0.025 4.025 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.079 4.079 9 N -0.250 5.250 10 C 0.062 3.938 11 C -0.550 4.550 12 H 0.082 0.918 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.061 4.061 20 C -0.115 4.115 21 C -0.094 4.094 22 N -0.140 5.140 23 N -0.218 5.218 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.023 0.977 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.067 9.185 8.914 18.292 hybrid contribution 0.998 -0.487 -0.289 1.147 sum -12.070 8.698 8.625 17.197 Atomic orbital electron populations 1.20122 0.83107 1.04493 1.04307 1.25914 1.00593 0.83675 1.00551 1.74630 0.89492 1.24041 1.21979 1.85290 1.22264 1.25036 1.65772 1.28978 0.97194 0.81970 0.94361 1.20365 0.87471 0.98103 1.00963 1.21670 0.99561 1.01429 0.92784 1.22097 0.94446 0.99387 0.91976 1.62356 1.41054 1.08960 1.12629 1.19859 0.86433 0.89458 0.98051 1.21102 1.12264 1.28132 0.93519 0.91815 1.24946 0.95824 0.96226 0.97318 1.69922 1.17204 1.34221 1.32298 0.86611 0.77614 0.78666 0.84868 1.20275 1.21394 1.20126 1.22100 0.92935 0.90990 1.00075 1.20246 1.03720 0.88500 0.99074 1.29447 0.92537 0.94200 0.93265 1.81299 1.10037 1.12465 1.10162 1.71928 0.99805 1.29258 1.20859 0.89334 0.89052 0.89677 0.87968 0.86910 0.90063 0.91267 0.94697 0.90498 0.97686 0.95127 0.92781 0.89009 0.91719 0.88129 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.17 1.95 8.22 -156.37 -1.28 0.66 16 3 N -0.39 -5.09 12.16 30.90 0.38 -4.71 16 4 O 0.07 0.90 11.31 18.10 0.20 1.11 16 5 C 0.20 2.17 7.77 -13.06 -0.10 2.07 16 6 C -0.03 -0.25 5.84 -27.89 -0.16 -0.41 16 7 C -0.12 -1.22 5.12 -26.73 -0.14 -1.36 16 8 C 0.05 0.63 4.74 -3.82 -0.02 0.61 16 9 N -0.53 -8.98 4.69 -236.08 -1.11 -10.08 16 10 C 0.19 4.05 4.54 -4.98 -0.02 4.03 16 11 C -0.51 -12.85 8.39 -34.44 -0.29 -13.14 16 12 H 0.06 1.61 7.39 -52.49 -0.39 1.22 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -24.59 13.29 55.43 0.74 -23.85 16 15 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.07 1.07 4.91 -3.83 -0.02 1.05 16 20 C -0.07 -1.01 5.05 -29.52 -0.15 -1.16 16 21 C 0.22 3.47 15.45 -20.64 -0.32 3.15 16 22 N -0.46 -8.24 18.56 42.30 0.79 -7.46 16 23 N -0.48 -6.07 11.55 -9.87 -0.11 -6.18 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.73 6.52 -51.93 -0.34 0.39 16 31 H 0.04 0.39 6.06 -51.93 -0.31 0.07 16 32 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 33 H 0.01 0.12 6.02 -51.93 -0.31 -0.19 16 34 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.09 1.64 6.98 -51.93 -0.36 1.28 16 37 H 0.06 0.87 6.41 -51.93 -0.33 0.54 16 38 H 0.10 1.09 6.34 -51.92 -0.33 0.77 16 39 H 0.12 1.91 6.28 -51.93 -0.33 1.58 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -30.54 333.37 -6.54 -37.08 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.20 Total: -3.32 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.22 Total: -3.15 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.68 Total: -52.29 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: 0.20 Total: 1.11 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.54 -6.54 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268646754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.976 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds