Wall clock time and date at job start Mon Mar 30 2020 23:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29951 * 126.28673 * 2 1 4 4 O 1.21302 * 110.25024 * 179.97438 * 3 2 1 5 5 C 1.33645 * 109.81367 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.55019 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46950 * 269.97293 * 6 5 4 8 8 C 1.53000 * 109.47012 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47069 * 179.97438 * 8 7 6 10 10 C 1.46894 * 111.00086 * 189.99749 * 9 8 7 11 11 C 1.50700 * 109.47177 * 168.87124 * 10 9 8 12 12 H 1.08000 * 120.00021 * 354.99168 * 11 10 9 13 13 C 1.37881 * 120.00100 * 174.99113 * 11 10 9 14 14 N 1.31512 * 119.99770 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99943 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47554 * 59.99873 * 15 13 11 17 17 H 1.48500 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46969 * 299.99651 * 15 13 11 19 19 C 1.46899 * 110.99715 * 66.04406 * 9 8 7 20 20 C 1.52997 * 109.47511 * 61.47488 * 19 9 8 21 21 C 1.47198 * 109.47713 * 179.44598 * 20 19 9 22 22 N 8.76656 * 151.34089 * 287.43150 * 2 1 3 23 23 N 1.31127 * 106.89328 * 359.97438 * 5 4 3 24 24 H 1.09005 * 109.47004 * 89.98486 * 1 2 3 25 25 H 1.09002 * 109.47024 * 209.97395 * 1 2 3 26 26 H 1.08999 * 109.47500 * 329.97775 * 1 2 3 27 27 H 1.09002 * 109.47599 * 29.96996 * 6 5 4 28 28 H 1.08996 * 109.47196 * 149.97159 * 6 5 4 29 29 H 1.09004 * 109.46917 * 299.99724 * 7 6 5 30 30 H 1.08996 * 109.47281 * 59.99917 * 7 6 5 31 31 H 1.08996 * 109.47289 * 299.99112 * 8 7 6 32 32 H 1.08996 * 109.47454 * 59.99670 * 8 7 6 33 33 H 1.09007 * 109.47516 * 288.87117 * 10 9 8 34 34 H 1.08996 * 109.47157 * 48.86970 * 10 9 8 35 35 H 0.97001 * 119.99527 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47143 * 181.47494 * 19 9 8 37 37 H 1.09004 * 109.47476 * 301.47165 * 19 9 8 38 38 H 1.09008 * 109.46970 * 299.44675 * 20 19 9 39 39 H 1.08997 * 109.47231 * 59.44129 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0015 6 6 4.7969 -1.4369 0.0029 7 6 5.2263 -1.7145 -1.4392 8 6 6.5124 -2.5432 -1.4378 9 7 6.9244 -2.8103 -2.8224 10 6 8.0133 -3.7952 -2.8670 11 6 8.2237 -4.2474 -4.2890 12 1 7.5586 -3.9058 -5.0683 13 6 9.2655 -5.0971 -4.5953 14 7 10.0758 -5.5126 -3.6464 15 14 9.5267 -5.6570 -6.3581 16 1 9.7628 -4.4737 -7.2236 17 1 10.7047 -6.5590 -6.4216 18 1 8.3206 -6.3832 -6.8307 19 6 7.3096 -1.5683 -3.5058 20 6 8.5023 -0.9378 -2.7841 21 6 8.8968 0.2997 -3.4767 22 7 9.1995 1.2595 -4.0113 23 7 2.3030 -1.0840 0.0020 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8898 0.5142 27 1 5.5841 -0.8847 0.5164 28 1 4.6205 -2.3813 0.5176 29 1 4.4393 -2.2667 -1.9527 30 1 5.4028 -0.7701 -1.9539 31 1 7.2997 -1.9914 -0.9242 32 1 6.3356 -3.4876 -0.9231 33 1 8.9300 -3.3408 -2.4908 34 1 7.7526 -4.6534 -2.2476 35 1 10.8089 -6.1101 -3.8620 36 1 7.5851 -1.7912 -4.5365 37 1 6.4703 -0.8729 -3.4963 38 1 8.2237 -0.7058 -1.7561 39 1 9.3385 -1.6369 -2.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268646754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:41 Heat of formation + Delta-G solvation = 66.126733 kcal Electronic energy + Delta-G solvation = -20828.375154 eV Core-core repulsion = 17580.491122 eV Total energy + Delta-G solvation = -3247.884031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.56810 -39.49652 -37.36981 -37.07777 -35.86850 -34.59699 -32.94450 -31.56854 -30.11400 -29.10865 -26.93270 -25.55956 -24.57425 -23.30275 -21.98052 -20.95516 -19.11132 -18.76433 -18.38244 -18.14656 -17.00896 -16.46309 -16.21211 -15.82977 -15.30353 -15.18768 -14.86568 -14.58009 -14.44970 -14.32438 -13.85535 -13.56060 -13.44373 -13.41972 -13.25039 -13.03482 -12.84962 -12.68058 -12.56745 -12.41144 -12.24711 -12.10217 -12.03106 -11.81479 -11.77186 -11.20375 -11.11377 -10.80456 -10.48518 -8.81552 -8.10300 -6.16154 0.16337 1.22794 1.46643 1.47649 1.54227 1.78818 1.82652 1.88839 2.47002 2.74815 3.05660 3.12130 3.24077 3.50890 3.94688 4.11475 4.21696 4.27917 4.36576 4.41096 4.55250 4.58316 4.58611 4.70070 4.77309 4.85287 4.93323 4.98355 5.03657 5.12767 5.25316 5.30320 5.41776 5.48857 5.56122 5.78910 6.21514 6.42929 6.64134 6.80188 7.01071 7.18838 7.52779 8.98618 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.003550 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.918077 B = 7885.242856 C = 8691.557364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.159 3.841 3 N -0.416 5.416 4 O 0.065 5.935 5 C 0.200 3.800 6 C -0.023 4.023 7 C -0.103 4.103 8 C 0.049 3.951 9 N -0.539 5.539 10 C 0.200 3.800 11 C -0.517 4.517 12 H 0.057 0.943 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.946 3.054 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.072 3.928 20 C -0.062 4.062 21 C 0.244 3.756 22 N -0.501 5.501 23 N -0.509 5.509 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.074 0.926 33 H -0.001 1.001 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 8.196 10.704 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.128 5.128 4 O 0.010 5.990 5 C -0.020 4.020 6 C -0.062 4.062 7 C -0.142 4.142 8 C -0.079 4.079 9 N -0.262 5.262 10 C 0.074 3.926 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.187 4.187 14 N -0.568 5.568 15 Si 0.773 3.227 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.072 4.072 22 N -0.180 5.180 23 N -0.244 5.244 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.017 0.983 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.158 0.842 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.896 9.799 9.694 19.573 hybrid contribution 1.185 -0.683 -0.514 1.460 sum -12.712 9.116 9.180 18.138 Atomic orbital electron populations 1.20327 0.80707 1.05710 1.05351 1.26628 1.02138 0.83199 0.99343 1.74621 0.89903 1.24859 1.23424 1.85255 1.22130 1.25507 1.66110 1.29445 0.97682 0.81773 0.93113 1.20469 0.87204 0.98799 0.99740 1.21485 0.97779 1.00770 0.94201 1.22175 0.95987 1.00217 0.89487 1.62177 1.39129 1.09100 1.15774 1.19503 0.87609 0.89942 0.95549 1.21482 1.11539 1.27361 0.95199 0.92460 1.25610 0.96030 0.96743 1.00339 1.70012 1.17851 1.35202 1.33768 0.85782 0.77414 0.78194 0.81289 1.20044 1.21370 1.19819 1.22027 0.94468 0.90823 0.98495 1.20225 1.02309 0.87074 1.00711 1.29642 0.91450 0.93862 0.92264 1.81326 1.11237 1.13951 1.11446 1.71956 1.00611 1.29909 1.21901 0.88248 0.87913 0.88374 0.84855 0.85721 0.91906 0.90849 0.92172 0.90706 0.98308 0.97354 0.92969 0.92013 0.89222 0.84199 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.51 71.23 0.75 -0.10 16 2 C 0.16 3.55 8.22 138.46 1.14 4.68 16 3 N -0.42 -10.33 12.16 -60.30 -0.73 -11.06 16 4 O 0.06 1.49 11.31 74.81 0.85 2.33 16 5 C 0.20 4.04 7.77 88.38 0.69 4.73 16 6 C -0.02 -0.31 5.84 29.85 0.17 -0.14 16 7 C -0.10 -1.91 5.12 30.59 0.16 -1.75 16 8 C 0.05 1.11 4.74 86.30 0.41 1.52 16 9 N -0.54 -17.64 4.69 -900.81 -4.23 -21.87 16 10 C 0.20 8.64 4.54 85.56 0.39 9.03 16 11 C -0.52 -26.08 8.39 25.60 0.21 -25.87 16 12 H 0.06 2.90 7.39 -2.91 -0.02 2.88 16 13 C 0.01 0.59 5.46 84.66 0.46 1.05 16 14 N -0.93 -51.23 13.29 21.45 0.28 -50.94 16 15 Si 0.95 42.27 29.54 68.60 2.03 44.29 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.07 2.10 4.91 86.30 0.42 2.52 16 20 C -0.06 -1.56 5.05 28.79 0.15 -1.41 16 21 C 0.24 7.21 15.45 89.40 1.38 8.59 16 22 N -0.50 -17.35 18.56 20.05 0.37 -16.98 16 23 N -0.51 -12.01 11.55 -303.19 -3.50 -15.51 16 24 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.31 6.52 -2.39 -0.02 1.29 16 31 H 0.06 1.09 6.06 -2.39 -0.01 1.08 16 32 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 33 H 0.00 -0.03 6.02 -2.38 -0.01 -0.05 16 34 H 0.01 0.40 7.91 -2.39 -0.02 0.38 16 35 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.06 2.18 6.98 -2.39 -0.02 2.16 16 37 H 0.09 2.19 6.41 -2.38 -0.02 2.17 16 38 H 0.14 2.46 6.34 -2.38 -0.02 2.45 16 39 H 0.11 3.16 6.28 -2.39 -0.02 3.15 16 Total: -1.00 -66.50 333.37 2.46 -64.04 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.07 Total: 2.82 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 6.33 Total: 2.86 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -7.81 Total: -116.36 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.85 Total: 2.33 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.50 2.46 -64.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268646754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.168 kcal (2) G-P(sol) polarization free energy of solvation -66.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds