Wall clock time and date at job start Tue Mar 31 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21476 * 119.99883 * 359.97438 * 14 13 3 16 16 C 1.48461 * 120.00185 * 179.97438 * 14 13 3 17 17 C 1.39516 * 120.50520 * 179.97438 * 16 14 13 18 18 C 1.38772 * 118.42218 * 179.97438 * 17 16 14 19 19 C 1.50705 * 120.37289 * 179.97438 * 18 17 16 20 20 N 1.32134 * 119.24977 * 359.97438 * 18 17 16 21 21 C 1.32569 * 120.95721 * 0.02562 * 20 18 17 22 22 N 1.38436 * 119.13616 * 179.97438 * 21 20 18 23 23 C 1.46497 * 119.99789 * 179.97438 * 22 21 20 24 24 N 1.32288 * 121.72448 * 359.73924 * 21 20 18 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.07999 * 120.78392 * 359.97438 * 17 16 14 33 33 H 1.08999 * 109.47143 * 89.99743 * 19 18 17 34 34 H 1.09000 * 109.46920 * 209.99951 * 19 18 17 35 35 H 1.09000 * 109.46884 * 329.99784 * 19 18 17 36 36 H 0.96998 * 120.00039 * 0.02562 * 22 21 20 37 37 H 1.08998 * 109.47150 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47076 * 300.00084 * 23 22 21 39 39 H 1.09004 * 109.47122 * 60.00209 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3405 2.6325 0.4327 16 6 0.0423 3.3276 2.6358 17 6 -1.2149 3.9182 2.7664 18 6 -1.5373 4.5258 3.9717 19 6 -2.8828 5.1776 4.1606 20 7 -0.6510 4.5263 4.9518 21 6 0.5361 3.9567 4.7980 22 7 1.4361 3.9798 5.8497 23 6 2.7531 3.3557 5.7005 24 7 0.8816 3.3630 3.6675 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 -1.9205 3.9028 1.9489 33 1 -3.5894 4.4458 4.5521 34 1 -2.7900 6.0053 4.8637 35 1 -3.2422 5.5533 3.2026 36 1 1.1944 4.4085 6.6855 37 1 3.3179 3.4738 6.6252 38 1 2.6298 2.2948 5.4825 39 1 3.2915 3.8345 4.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280864999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:54 Heat of formation + Delta-G solvation = -7.298431 kcal Electronic energy + Delta-G solvation = -21710.902298 eV Core-core repulsion = 18459.834313 eV Total energy + Delta-G solvation = -3251.067985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.22026 -40.50288 -37.24226 -36.87407 -35.39883 -34.23426 -32.82337 -32.49048 -29.48860 -29.05108 -27.32983 -26.10586 -24.70139 -23.18327 -22.19774 -21.25363 -19.95042 -18.59302 -18.14760 -17.30661 -17.12896 -16.78364 -16.38762 -16.09623 -15.97712 -15.75174 -14.99967 -14.65410 -14.61255 -14.27169 -13.99159 -13.62628 -13.45595 -13.20209 -13.12565 -12.97282 -12.89821 -12.70932 -12.18544 -12.11006 -12.08363 -11.71128 -11.58055 -11.25686 -11.19950 -11.06536 -10.55265 -10.24038 -9.72421 -9.14045 -8.16821 -6.33846 -0.43925 0.12099 1.44304 1.45509 1.57453 1.83912 1.85333 2.21405 2.45864 2.87516 2.98348 3.12770 3.55545 3.70225 4.00812 4.28258 4.45144 4.48026 4.51868 4.55084 4.69996 4.73505 4.79098 4.86336 4.95253 5.03608 5.04931 5.23195 5.33720 5.40644 5.48815 5.58118 5.72061 5.75873 5.83803 6.00501 6.13710 6.42375 6.71220 6.83562 7.22666 7.28013 7.42425 8.88884 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.004904 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.816386 B = 5708.589019 C = 6717.892228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.552 3.448 15 O -0.561 6.561 16 C 0.167 3.833 17 C -0.241 4.241 18 C 0.221 3.779 19 C -0.100 4.100 20 N -0.565 5.565 21 C 0.549 3.451 22 N -0.692 5.692 23 C 0.103 3.897 24 N -0.564 5.564 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.425 0.575 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 7.402 16.817 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.326 5.326 14 C 0.336 3.664 15 O -0.440 6.440 16 C 0.019 3.981 17 C -0.267 4.267 18 C 0.071 3.929 19 C -0.157 4.157 20 N -0.289 5.289 21 C 0.191 3.809 22 N -0.330 5.330 23 C -0.041 4.041 24 N -0.291 5.291 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.264 0.736 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.043 7.155 16.674 19.124 hybrid contribution 0.655 -0.101 -0.648 0.927 sum -5.388 7.054 16.026 18.320 Atomic orbital electron populations 1.21686 0.96824 0.99426 1.00243 1.21794 0.93913 0.98801 1.01471 1.18553 0.94061 0.89415 0.80741 0.97529 1.21543 0.91174 1.39081 1.06933 0.91450 1.25722 1.03303 0.94202 0.94867 1.70037 1.36970 1.38103 1.09906 0.85324 0.79095 0.77912 0.78166 1.18717 1.20254 1.20840 1.46221 1.14742 1.53777 1.17887 1.18211 0.82807 0.79210 0.86212 1.90727 1.52372 1.61005 1.39910 1.21352 0.91477 0.93508 0.91763 1.22582 0.98087 1.04377 1.01697 1.22123 0.95923 0.88579 0.86287 1.20935 0.88132 1.01332 1.05271 1.67753 1.02740 1.24216 1.34199 1.19573 0.86883 0.87557 0.86882 1.43931 1.14420 1.61873 1.12789 1.21651 0.81440 0.97418 1.03599 1.67740 1.36619 1.24010 1.00752 0.93272 0.94379 0.94844 0.90384 0.94322 0.92457 0.75832 0.82228 0.87751 0.88839 0.88105 0.73591 0.86855 0.93187 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.90 16 3 C 0.28 14.46 2.24 44.25 0.10 14.56 16 4 H 0.01 0.42 7.58 -2.38 -0.02 0.40 16 5 C -0.55 -29.66 8.73 25.60 0.22 -29.43 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -51.88 11.28 21.45 0.24 -51.64 16 9 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 N -0.68 -30.67 5.01 -448.40 -2.25 -32.91 16 14 C 0.55 23.94 6.40 86.97 0.56 24.50 16 15 O -0.56 -27.03 13.56 -3.64 -0.05 -27.08 16 16 C 0.17 6.03 6.79 42.00 0.29 6.32 16 17 C -0.24 -7.22 9.39 22.71 0.21 -7.01 16 18 C 0.22 5.42 6.82 42.64 0.29 5.71 16 19 C -0.10 -1.42 10.21 71.24 0.73 -0.69 16 20 N -0.56 -14.99 10.38 -186.06 -1.93 -16.92 16 21 C 0.55 15.71 8.42 261.53 2.20 17.91 16 22 N -0.69 -14.46 5.86 -372.66 -2.18 -16.64 16 23 C 0.10 1.86 10.67 127.77 1.36 3.22 16 24 N -0.56 -18.90 8.84 -187.09 -1.65 -20.55 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.70 5.65 -2.38 -0.01 1.69 16 27 H 0.03 1.61 7.85 -2.39 -0.02 1.59 16 28 H 0.08 4.31 5.94 -2.38 -0.01 4.29 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 31 H 0.41 17.03 7.92 -92.71 -0.73 16.30 16 32 H 0.16 4.52 7.73 -2.91 -0.02 4.50 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.43 6.58 8.94 -92.71 -0.83 5.75 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -67.77 327.47 0.91 -66.86 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.48 Total: 28.95 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 7.19 Total: 25.64 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -7.78 Total: -138.67 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.77 0.91 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280864999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.563 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds