Wall clock time and date at job start Tue Mar 31 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21471 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.48469 * 119.99843 * 179.97438 * 14 13 3 17 17 C 1.39499 * 120.50429 * 179.71867 * 16 14 13 18 18 C 1.38778 * 118.42501 * 179.73409 * 17 16 14 19 19 C 1.50699 * 120.37744 * 180.26679 * 18 17 16 20 20 N 1.32140 * 119.24187 * 0.54424 * 18 17 16 21 21 C 1.32562 * 120.95849 * 359.72173 * 20 18 17 22 22 N 1.38436 * 119.13446 * 180.02562 * 21 20 18 23 23 C 1.46504 * 119.99658 * 179.97438 * 22 21 20 24 24 N 1.32289 * 121.72659 * 359.97438 * 21 20 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08000 * 120.78983 * 359.97438 * 17 16 14 33 33 H 1.09004 * 109.46984 * 270.27999 * 19 18 17 34 34 H 1.08999 * 109.47144 * 30.28088 * 19 18 17 35 35 H 1.08993 * 109.46864 * 150.28362 * 19 18 17 36 36 H 0.96998 * 119.99912 * 359.97354 * 22 21 20 37 37 H 1.08997 * 109.47204 * 299.99666 * 23 22 21 38 38 H 1.08998 * 109.47032 * 59.99816 * 23 22 21 39 39 H 1.08994 * 109.46694 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3408 2.6319 -0.4330 16 6 0.0426 3.3285 -2.6355 17 6 -1.2169 3.9135 -2.7683 18 6 -1.5366 4.5276 -3.9710 19 6 -2.8824 5.1786 -4.1602 20 7 -0.6494 4.5301 -4.9504 21 6 0.5378 3.9609 -4.7964 22 7 1.4387 3.9860 -5.8473 23 6 2.7563 3.3632 -5.6976 24 7 0.8847 3.3703 -3.6647 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.9249 3.8925 -1.9530 33 1 -3.5881 4.4467 -4.5533 34 1 -3.2430 5.5527 -3.2020 35 1 -2.7897 6.0073 -4.8621 36 1 1.1975 4.4160 -6.6827 37 1 3.2934 3.8418 -4.8788 38 1 2.6340 2.3020 -5.4808 39 1 3.3214 3.4822 -6.6220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280865004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:10 Heat of formation + Delta-G solvation = 12.474739 kcal Electronic energy + Delta-G solvation = -21709.672670 eV Core-core repulsion = 18459.462114 eV Total energy + Delta-G solvation = -3250.210556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.01564 -38.82955 -36.13026 -35.09481 -34.17213 -32.29797 -31.60730 -30.79703 -28.46477 -27.13778 -26.42519 -24.59772 -22.85399 -22.11356 -20.58961 -19.42671 -18.50226 -17.19203 -16.72053 -15.74718 -15.57750 -15.27167 -15.04430 -14.81251 -14.44362 -14.25351 -13.82289 -13.45620 -13.10804 -12.83329 -12.69014 -12.44984 -12.23542 -12.06076 -11.54045 -11.26111 -10.96764 -10.93754 -10.85583 -10.43906 -10.32934 -10.20793 -10.18311 -9.71308 -9.56332 -9.04478 -8.92653 -8.50553 -8.10950 -7.84443 -6.12319 -4.21243 0.85814 1.23479 2.83007 3.24375 3.32160 3.34437 3.36095 3.75986 4.12143 4.17331 4.35298 4.67899 4.88528 5.13387 5.19384 5.21372 5.37888 5.40737 5.54046 5.55786 5.73843 5.82352 5.89808 6.27052 6.39005 6.45525 6.64737 6.79165 6.98973 7.04285 7.19012 7.33734 7.39018 7.41298 7.62351 7.73324 7.88815 8.16469 8.30878 8.64613 8.75415 9.05288 9.45569 10.93206 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004904 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.740049 B = 5707.881745 C = 6717.322636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.551 3.449 15 O -0.533 6.533 16 C 0.189 3.811 17 C -0.237 4.237 18 C 0.212 3.788 19 C -0.103 4.103 20 N -0.567 5.567 21 C 0.562 3.438 22 N -0.705 5.705 23 C 0.105 3.895 24 N -0.546 5.546 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 6.653 -14.581 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.165 3.835 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.325 5.325 14 C 0.333 3.667 15 O -0.410 6.410 16 C 0.040 3.960 17 C -0.263 4.263 18 C 0.063 3.937 19 C -0.160 4.160 20 N -0.291 5.291 21 C 0.204 3.796 22 N -0.343 5.343 23 C -0.040 4.040 24 N -0.272 5.272 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.172 0.828 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.054 6.402 -14.377 16.862 hybrid contribution 0.711 0.074 0.028 0.715 sum -5.343 6.476 -14.349 16.625 Atomic orbital electron populations 1.21850 0.98346 0.98197 1.01165 1.21942 0.92623 0.99591 1.02477 1.18925 0.94543 0.89324 0.80671 0.93021 1.21257 0.90527 1.38950 1.06346 0.91900 1.24876 0.98638 0.94762 0.95339 1.69900 1.35048 1.37680 1.09346 0.86392 0.84832 0.77759 0.78124 1.19706 1.20897 1.20872 1.46444 1.13928 1.53330 1.18802 1.17780 0.83699 0.79994 0.85216 1.90757 1.51752 1.60115 1.38424 1.21840 0.89912 0.91667 0.92606 1.22426 0.99045 1.04338 1.00510 1.21404 0.94563 0.90084 0.87620 1.20766 0.90657 1.00873 1.03754 1.67564 1.02872 1.24525 1.34130 1.19183 0.86009 0.87756 0.86656 1.43796 1.14538 1.62645 1.13333 1.21530 0.81968 0.98522 1.01985 1.67859 1.36388 1.22729 1.00249 0.95694 0.94466 0.93004 0.88065 0.94893 0.92604 0.76647 0.82754 0.89663 0.89813 0.90116 0.75130 0.91959 0.92026 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -14.84 5.02 -55.68 -0.28 -15.12 16 14 C 0.55 11.61 6.40 -12.04 -0.08 11.54 16 15 O -0.53 -12.38 13.55 5.39 0.07 -12.31 16 16 C 0.19 3.40 6.79 -82.66 -0.56 2.84 16 17 C -0.24 -3.64 9.39 -38.91 -0.37 -4.01 16 18 C 0.21 2.83 6.83 -82.26 -0.56 2.26 16 19 C -0.10 -0.90 10.21 36.01 0.37 -0.54 16 20 N -0.57 -8.11 10.38 -10.16 -0.11 -8.22 16 21 C 0.56 8.40 8.42 -322.94 -2.72 5.68 16 22 N -0.71 -8.05 5.86 -69.14 -0.41 -8.46 16 23 C 0.10 1.03 10.67 59.85 0.64 1.67 16 24 N -0.55 -9.21 8.84 -10.49 -0.09 -9.30 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.40 8.16 7.92 -40.82 -0.32 7.83 16 32 H 0.15 2.23 7.73 -52.49 -0.41 1.82 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.41 3.73 8.94 -40.82 -0.37 3.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -30.65 327.49 -9.34 -39.99 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.42 Total: 9.52 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -3.66 Total: 7.31 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -0.26 Total: -64.99 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.65 -9.34 -39.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280865004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.467 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds