Wall clock time and date at job start Tue Mar 31 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21471 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.48469 * 119.99843 * 179.97438 * 14 13 3 17 17 C 1.39499 * 120.50429 * 179.71867 * 16 14 13 18 18 C 1.38778 * 118.42501 * 179.73409 * 17 16 14 19 19 C 1.50699 * 120.37744 * 180.26679 * 18 17 16 20 20 N 1.32140 * 119.24187 * 0.54424 * 18 17 16 21 21 C 1.32562 * 120.95849 * 359.72173 * 20 18 17 22 22 N 1.38436 * 119.13446 * 180.02562 * 21 20 18 23 23 C 1.46504 * 119.99658 * 179.97438 * 22 21 20 24 24 N 1.32289 * 121.72659 * 359.97438 * 21 20 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08000 * 120.78983 * 359.97438 * 17 16 14 33 33 H 1.09004 * 109.46984 * 270.27999 * 19 18 17 34 34 H 1.08999 * 109.47144 * 30.28088 * 19 18 17 35 35 H 1.08993 * 109.46864 * 150.28362 * 19 18 17 36 36 H 0.96998 * 119.99912 * 359.97354 * 22 21 20 37 37 H 1.08997 * 109.47204 * 299.99666 * 23 22 21 38 38 H 1.08998 * 109.47032 * 59.99816 * 23 22 21 39 39 H 1.08994 * 109.46694 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3408 2.6319 -0.4330 16 6 0.0426 3.3285 -2.6355 17 6 -1.2169 3.9135 -2.7683 18 6 -1.5366 4.5276 -3.9710 19 6 -2.8824 5.1786 -4.1602 20 7 -0.6494 4.5301 -4.9504 21 6 0.5378 3.9609 -4.7964 22 7 1.4387 3.9860 -5.8473 23 6 2.7563 3.3632 -5.6976 24 7 0.8847 3.3703 -3.6647 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -1.9249 3.8925 -1.9530 33 1 -3.5881 4.4467 -4.5533 34 1 -3.2430 5.5527 -3.2020 35 1 -2.7897 6.0073 -4.8621 36 1 1.1975 4.4160 -6.6827 37 1 3.2934 3.8418 -4.8788 38 1 2.6340 2.3020 -5.4808 39 1 3.3214 3.4822 -6.6220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280865004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:05 Heat of formation + Delta-G solvation = -7.320749 kcal Electronic energy + Delta-G solvation = -21710.531067 eV Core-core repulsion = 18459.462114 eV Total energy + Delta-G solvation = -3251.068953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -42.22063 -40.50285 -37.24137 -36.87318 -35.39877 -34.23396 -32.82365 -32.49082 -29.48908 -29.05091 -27.32997 -26.10524 -24.70135 -23.18325 -22.19726 -21.25332 -19.95021 -18.59332 -18.14750 -17.30610 -17.12696 -16.78551 -16.38731 -16.09635 -15.97680 -15.75204 -14.99920 -14.65370 -14.61204 -14.27304 -13.99014 -13.62648 -13.45640 -13.20112 -13.12599 -12.97304 -12.89807 -12.70965 -12.18559 -12.10994 -12.08376 -11.71193 -11.57948 -11.25663 -11.19892 -11.06481 -10.55498 -10.24024 -9.72350 -9.14054 -8.16830 -6.33868 -0.43865 0.12082 1.44298 1.45497 1.57434 1.83928 1.85345 2.21412 2.45847 2.87533 2.98367 3.12777 3.55552 3.70246 4.00836 4.28258 4.45185 4.48012 4.51899 4.55183 4.70026 4.73535 4.79097 4.86330 4.95235 5.03635 5.04949 5.23208 5.33731 5.40654 5.48816 5.58145 5.72072 5.75887 5.83823 6.00524 6.13655 6.42385 6.71237 6.83587 7.22692 7.28032 7.42432 8.88904 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004904 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.740049 B = 5707.881745 C = 6717.322636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.552 3.448 15 O -0.561 6.561 16 C 0.167 3.833 17 C -0.241 4.241 18 C 0.221 3.779 19 C -0.100 4.100 20 N -0.565 5.565 21 C 0.549 3.451 22 N -0.692 5.692 23 C 0.103 3.897 24 N -0.564 5.564 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.425 0.575 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 7.396 -16.823 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.326 5.326 14 C 0.336 3.664 15 O -0.440 6.440 16 C 0.019 3.981 17 C -0.267 4.267 18 C 0.071 3.929 19 C -0.157 4.157 20 N -0.289 5.289 21 C 0.191 3.809 22 N -0.330 5.330 23 C -0.041 4.041 24 N -0.291 5.291 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.045 7.157 -16.676 19.127 hybrid contribution 0.654 -0.097 0.652 0.928 sum -5.391 7.060 -16.024 18.322 Atomic orbital electron populations 1.21688 0.96821 0.99427 1.00247 1.21792 0.93912 0.98793 1.01460 1.18555 0.94058 0.89419 0.80736 0.97534 1.21542 0.91181 1.39207 1.06799 0.91450 1.25723 1.03297 0.94205 0.94868 1.70035 1.36982 1.38185 1.09820 0.85325 0.79102 0.77915 0.78164 1.18715 1.20855 1.20241 1.46224 1.14738 1.53783 1.17889 1.18213 0.82808 0.79212 0.86208 1.90726 1.52351 1.61018 1.39912 1.21349 0.91452 0.93512 0.91787 1.22579 0.98078 1.04355 1.01733 1.22126 0.95921 0.88575 0.86287 1.20933 0.88119 1.01351 1.05267 1.67752 1.02735 1.24261 1.34164 1.19572 0.86872 0.87586 0.86864 1.43934 1.14345 1.61861 1.12878 1.21651 0.81425 0.97439 1.03591 1.67742 1.36622 1.23992 1.00765 0.93269 0.94363 0.94855 0.90411 0.94310 0.92456 0.75830 0.82228 0.87741 0.88106 0.88844 0.73592 0.93340 0.93191 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.05 5.45 30.60 0.17 -5.88 16 3 C 0.28 14.47 2.24 44.25 0.10 14.56 16 4 H 0.01 0.41 7.58 -2.39 -0.02 0.40 16 5 C -0.55 -29.66 8.73 25.60 0.22 -29.43 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -51.89 11.29 21.45 0.24 -51.65 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.31 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.68 -30.67 5.02 -448.37 -2.25 -32.91 16 14 C 0.55 23.94 6.40 86.97 0.56 24.50 16 15 O -0.56 -27.03 13.55 -3.63 -0.05 -27.08 16 16 C 0.17 6.03 6.79 41.99 0.29 6.32 16 17 C -0.24 -7.22 9.39 22.70 0.21 -7.01 16 18 C 0.22 5.42 6.83 42.64 0.29 5.71 16 19 C -0.10 -1.42 10.21 71.24 0.73 -0.69 16 20 N -0.56 -14.99 10.38 -186.06 -1.93 -16.93 16 21 C 0.55 15.71 8.42 261.53 2.20 17.91 16 22 N -0.69 -14.46 5.86 -372.67 -2.18 -16.65 16 23 C 0.10 1.86 10.67 127.77 1.36 3.22 16 24 N -0.56 -18.90 8.84 -187.10 -1.65 -20.55 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.71 5.64 -2.39 -0.01 1.69 16 27 H 0.03 1.60 7.85 -2.38 -0.02 1.59 16 28 H 0.08 4.29 5.95 -2.39 -0.01 4.28 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.41 17.03 7.92 -92.71 -0.73 16.30 16 32 H 0.16 4.52 7.73 -2.91 -0.02 4.49 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.43 6.58 8.94 -92.71 -0.83 5.75 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.78 327.49 0.91 -66.87 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.48 Total: 28.93 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 7.19 Total: 25.65 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -7.78 Total: -138.69 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.78 0.91 -66.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280865004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.550 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds