Wall clock time and date at job start Tue Mar 31 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47073 * 2 1 4 4 N 1.46495 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.36686 * 120.00074 * 269.99991 * 4 3 2 6 6 H 1.07996 * 120.00197 * 132.88002 * 5 4 3 7 7 C 1.39188 * 119.99878 * 312.88514 * 5 4 3 8 8 N 1.31268 * 120.00052 * 167.96739 * 7 5 4 9 9 Si 1.86805 * 119.99752 * 347.96543 * 7 5 4 10 10 H 1.48498 * 109.46674 * 95.23976 * 9 7 5 11 11 H 1.48502 * 109.46678 * 215.23665 * 9 7 5 12 12 H 1.48494 * 109.46958 * 335.24017 * 9 7 5 13 13 C 1.34780 * 120.00343 * 90.00001 * 4 3 2 14 14 O 1.21547 * 119.99481 * 4.65372 * 13 4 3 15 15 C 1.48242 * 120.00208 * 184.65591 * 13 4 3 16 16 C 1.39651 * 120.51502 * 181.51864 * 15 13 4 17 17 C 1.38682 * 118.41707 * 180.02562 * 16 15 13 18 18 C 1.50703 * 120.36977 * 180.02562 * 17 16 15 19 19 N 1.32183 * 119.26203 * 0.02562 * 17 16 15 20 20 C 1.32575 * 120.98376 * 359.97438 * 19 17 16 21 21 N 1.38429 * 119.13493 * 180.02562 * 20 19 17 22 22 C 1.46498 * 120.00309 * 355.92648 * 21 20 19 23 23 N 1.32282 * 121.72796 * 0.02562 * 20 19 17 24 24 H 1.09006 * 109.46822 * 60.00313 * 1 2 3 25 25 H 1.09002 * 109.47053 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47570 * 300.00219 * 1 2 3 27 27 H 1.08996 * 109.47056 * 239.99857 * 2 1 3 28 28 H 1.09006 * 109.46822 * 119.99687 * 2 1 3 29 29 H 1.08997 * 109.47102 * 59.99494 * 3 2 1 30 30 H 1.08997 * 109.46965 * 299.99846 * 3 2 1 31 31 H 0.96996 * 120.00244 * 185.02329 * 8 7 5 32 32 H 1.07999 * 120.78782 * 0.03986 * 16 15 13 33 33 H 1.09001 * 109.47326 * 269.98254 * 18 17 16 34 34 H 1.09005 * 109.46863 * 29.98345 * 18 17 16 35 35 H 1.09002 * 109.47232 * 149.97820 * 18 17 16 36 36 H 0.97001 * 119.99978 * 175.93525 * 21 20 19 37 37 H 1.08997 * 109.47381 * 300.00576 * 22 21 20 38 38 H 1.09001 * 109.46829 * 60.00549 * 22 21 20 39 39 H 1.08998 * 109.47428 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1879 1.4427 1.1846 6 1 5.0090 0.7574 1.3345 7 6 3.8250 2.3261 2.1972 8 7 4.3123 2.1742 3.4066 9 14 2.6446 3.7279 1.8350 10 1 1.2631 3.3161 2.1915 11 1 3.0288 4.9178 2.6361 12 1 2.7037 4.0638 0.3898 13 6 4.1794 1.4423 -1.1663 14 8 3.5751 1.5276 -2.2174 15 6 5.6582 1.3381 -1.1677 16 6 6.3700 1.3687 -2.3688 17 6 7.7522 1.2674 -2.3195 18 6 8.5640 1.2960 -3.5889 19 7 8.3497 1.1453 -1.1468 20 6 7.6476 1.1192 -0.0225 21 7 8.3128 0.9906 1.1846 22 6 9.7646 0.7958 1.2039 23 7 6.3281 1.2129 -0.0241 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 4.0043 2.7438 4.1287 32 1 5.8563 1.4691 -3.3135 33 1 8.6875 0.2802 -3.9643 34 1 8.0486 1.8994 -4.3362 35 1 9.5431 1.7294 -3.3844 36 1 7.8176 1.0293 2.0178 37 1 10.0158 -0.1184 0.6662 38 1 10.2515 1.6449 0.7243 39 1 10.1068 0.7156 2.2357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281000804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:08 Heat of formation + Delta-G solvation = 20.995884 kcal Electronic energy + Delta-G solvation = -22253.783301 eV Core-core repulsion = 19003.942249 eV Total energy + Delta-G solvation = -3249.841052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.03859 -40.46560 -37.34990 -36.76129 -35.37311 -34.52674 -33.38667 -32.25740 -29.52254 -27.98093 -27.12478 -26.88536 -24.59391 -23.48013 -22.67450 -21.08637 -19.48537 -18.97138 -18.01868 -17.45851 -16.87762 -16.52825 -16.36778 -15.98007 -15.68216 -15.65050 -15.48164 -14.72297 -14.56319 -14.32389 -14.11967 -14.01771 -13.55898 -13.32926 -13.24233 -13.08991 -12.93088 -12.67260 -12.50379 -12.25821 -11.97665 -11.66683 -11.49446 -11.36181 -11.21339 -11.12722 -10.88788 -10.00204 -9.40169 -8.96908 -8.33532 -6.04552 -0.23507 0.32153 1.15560 1.27904 1.36362 1.92850 2.03271 2.18024 2.42331 2.95729 3.10356 3.24071 3.71574 3.87487 3.96362 4.12704 4.21656 4.37424 4.40030 4.51180 4.54239 4.59015 4.70983 4.73261 4.83139 4.91143 4.92858 4.95903 5.09783 5.10580 5.22811 5.32702 5.43426 5.55193 5.92877 6.15083 6.25379 6.42854 6.62776 6.97837 7.31764 7.48756 7.66894 8.72187 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.007019 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.123929 B = 3988.067033 C = 4980.290462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.093 3.907 4 N -0.446 5.446 5 C -0.305 4.305 6 H 0.120 0.880 7 C 0.032 3.968 8 N -0.892 5.892 9 Si 0.911 3.089 10 H -0.252 1.252 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.508 3.492 14 O -0.603 6.603 15 C 0.169 3.831 16 C -0.251 4.251 17 C 0.204 3.796 18 C -0.092 4.092 19 N -0.568 5.568 20 C 0.533 3.467 21 N -0.705 5.705 22 C 0.112 3.888 23 N -0.524 5.524 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.276 0.724 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.416 0.584 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -2.589 -6.563 9.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.029 4.029 4 N -0.164 5.164 5 C -0.435 4.435 6 H 0.137 0.863 7 C -0.172 4.172 8 N -0.530 5.530 9 Si 0.738 3.262 10 H -0.177 1.177 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.297 3.703 14 O -0.489 6.489 15 C 0.020 3.980 16 C -0.278 4.278 17 C 0.056 3.944 18 C -0.150 4.150 19 N -0.293 5.293 20 C 0.176 3.824 21 N -0.342 5.342 22 C -0.032 4.032 23 N -0.249 5.249 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.030 -2.563 -5.969 8.863 hybrid contribution -1.233 0.959 0.068 1.564 sum 4.796 -1.604 -5.901 7.772 Atomic orbital electron populations 1.21679 0.92916 1.03018 1.02216 1.21690 0.97698 0.95149 1.01622 1.21904 0.81033 0.98926 1.01007 1.43872 1.05221 1.61668 1.05605 1.19707 1.15813 1.19203 0.88749 0.86266 1.25879 0.98124 0.97931 0.95235 1.69591 1.43036 1.39887 1.00490 0.86341 0.80786 0.80790 0.78244 1.17683 1.21550 1.20348 1.18483 0.86195 0.81494 0.84115 1.90590 1.69172 1.57046 1.32060 1.21342 0.94341 0.92994 0.89349 1.22477 0.95843 1.10072 0.99445 1.22087 0.90755 0.87299 0.94279 1.20846 0.99467 1.04935 0.89703 1.67701 1.40680 1.22990 0.97954 1.20002 0.85604 0.89096 0.87714 1.44112 1.08880 1.77904 1.03328 1.21586 0.76921 1.01184 1.03469 1.68975 1.07029 1.19554 1.29292 0.91977 0.90566 0.92402 0.92838 0.92246 0.91925 0.91161 0.91368 0.82573 0.88010 0.88283 0.89222 0.74730 0.92675 0.92696 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.91 71.98 0.71 -3.33 16 2 C -0.12 -4.65 6.26 30.59 0.19 -4.46 16 3 C 0.09 4.13 4.12 86.38 0.36 4.49 16 4 N -0.45 -22.46 2.03 -638.43 -1.30 -23.75 16 5 C -0.31 -16.41 8.15 84.17 0.69 -15.72 16 6 H 0.12 6.89 5.94 -2.91 -0.02 6.88 16 7 C 0.03 1.72 5.41 85.01 0.46 2.18 16 8 N -0.89 -49.09 13.94 21.70 0.30 -48.79 16 9 Si 0.91 42.95 24.85 68.60 1.70 44.65 16 10 H -0.25 -10.85 6.85 99.48 0.68 -10.17 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.28 -13.71 7.05 99.48 0.70 -13.01 16 13 C 0.51 25.55 7.63 86.90 0.66 26.21 16 14 O -0.60 -30.86 15.98 -3.86 -0.06 -30.92 16 15 C 0.17 7.84 6.68 41.95 0.28 8.12 16 16 C -0.25 -9.57 9.39 22.72 0.21 -9.36 16 17 C 0.20 6.62 6.82 42.61 0.29 6.91 16 18 C -0.09 -1.85 10.21 71.24 0.73 -1.13 16 19 N -0.57 -20.33 9.51 -186.11 -1.77 -22.10 16 20 C 0.53 21.65 8.42 261.53 2.20 23.85 16 21 N -0.70 -24.24 5.86 -372.67 -2.18 -26.42 16 22 C 0.11 2.71 10.68 127.77 1.36 4.08 16 23 N -0.52 -24.60 6.50 -187.14 -1.22 -25.82 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.06 2.79 3.81 -2.39 -0.01 2.78 16 30 H 0.07 3.09 7.36 -2.39 -0.02 3.07 16 31 H 0.28 14.29 8.31 -92.71 -0.77 13.51 16 32 H 0.16 5.44 7.73 -2.91 -0.02 5.42 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.42 14.99 8.94 -92.71 -0.83 14.17 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -66.62 324.97 3.83 -62.78 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.21 Total: 28.53 kcal Atomic # 6 Polarization: 33.69 SS G_CDS: 8.15 Total: 41.84 kcal Atomic # 7 Polarization: -140.72 SS G_CDS: -6.17 Total: -146.89 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.06 Total: -30.92 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.70 Total: 44.65 kcal Total: -66.62 3.83 -62.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281000804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.779 kcal (2) G-P(sol) polarization free energy of solvation -66.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds