Wall clock time and date at job start Tue Mar 31 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 N 1.46500 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99977 * 88.75667 * 4 3 2 6 6 H 1.08002 * 119.99672 * 177.66100 * 5 4 3 7 7 C 1.38949 * 120.00199 * 357.66638 * 5 4 3 8 8 N 1.31412 * 120.00001 * 333.60223 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 153.60187 * 7 5 4 10 10 H 1.48493 * 109.47184 * 59.99708 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46827 * 299.99698 * 9 7 5 13 13 C 1.34773 * 119.99774 * 268.75747 * 4 3 2 14 14 O 1.21294 * 120.00237 * 2.54312 * 13 4 3 15 15 C 1.50706 * 120.00081 * 182.53747 * 13 4 3 16 16 H 1.08998 * 109.44756 * 327.63469 * 15 13 4 17 17 C 1.53102 * 109.45284 * 207.69800 * 15 13 4 18 18 C 1.53448 * 109.54105 * 169.89245 * 17 15 13 19 19 C 1.50540 * 108.31967 * 49.73610 * 18 17 15 20 20 N 1.34392 * 129.25350 * 163.42643 * 19 18 17 21 21 H 0.96998 * 126.00945 * 0.25036 * 20 19 18 22 22 N 1.29103 * 107.98710 * 180.25311 * 20 19 18 23 23 N 1.29023 * 110.25976 * 359.93994 * 22 20 19 24 24 C 1.32915 * 108.63215 * 359.96948 * 23 22 20 25 25 C 1.50594 * 129.16319 * 180.10376 * 24 23 22 26 26 H 1.09000 * 109.46697 * 300.00406 * 1 2 3 27 27 H 1.09002 * 109.47203 * 60.00339 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47177 * 120.00005 * 2 1 3 30 30 H 1.09002 * 109.47125 * 240.00232 * 2 1 3 31 31 H 1.09008 * 109.47073 * 300.00146 * 3 2 1 32 32 H 1.08998 * 109.47232 * 59.99419 * 3 2 1 33 33 H 0.96998 * 120.00428 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.45996 * 289.92279 * 17 15 13 35 35 H 1.08996 * 109.46216 * 49.88093 * 17 15 13 36 36 H 1.08997 * 109.71872 * 290.01844 * 18 17 15 37 37 H 1.08996 * 109.70710 * 169.45199 * 18 17 15 38 38 H 1.09008 * 109.68867 * 43.81845 * 25 24 23 39 39 H 1.08997 * 109.69374 * 283.24454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1901 1.4169 -1.1880 6 1 5.2694 1.4551 -1.1896 7 6 3.4957 1.3420 -2.3892 8 7 2.3030 0.7916 -2.4254 9 14 4.2577 2.0237 -3.9525 10 1 5.5333 1.3162 -4.2307 11 1 3.3222 1.8216 -5.0880 12 1 4.5234 3.4747 -3.7817 13 6 4.1794 1.4676 1.1660 14 8 3.5742 1.4436 2.2170 15 6 5.6853 1.5254 1.1649 16 1 6.0684 0.9901 0.2961 17 6 6.2216 0.8737 2.4422 18 6 7.7425 0.7027 2.3317 19 6 8.3362 2.0167 1.8993 20 7 9.6124 2.4338 1.9585 21 1 10.3637 1.9240 2.2998 22 7 9.6627 3.6324 1.4814 23 7 8.4871 4.0166 1.1138 24 6 7.6244 3.0349 1.3559 25 6 6.1403 2.9893 1.1045 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.8183 0.7389 -3.2640 34 1 5.9885 1.5068 3.2983 35 1 5.7553 -0.1025 2.5752 36 1 7.9735 -0.0653 1.5936 37 1 8.1515 0.4158 3.3004 38 1 5.9219 3.4016 0.1193 39 1 5.6205 3.5673 1.8685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283027268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:25 Heat of formation + Delta-G solvation = 56.051099 kcal Electronic energy + Delta-G solvation = -22383.425102 eV Core-core repulsion = 19135.104159 eV Total energy + Delta-G solvation = -3248.320943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = -0.45 seconds Orbital eigenvalues (eV) -43.28065 -39.04888 -36.40147 -34.97805 -33.72423 -32.28586 -31.51311 -30.03289 -29.81654 -25.94186 -24.85073 -23.86722 -22.84544 -22.40170 -20.56663 -19.55825 -18.90230 -18.03668 -16.79729 -16.26513 -15.94478 -14.75746 -14.40254 -14.27916 -14.07884 -13.63413 -13.59314 -13.17164 -13.02025 -12.91304 -12.21501 -11.89480 -11.75669 -11.51423 -11.36384 -11.26511 -11.08565 -10.95109 -10.79892 -10.62493 -10.42043 -10.31646 -10.27770 -10.07329 -9.92535 -9.47018 -8.81347 -8.69309 -8.32683 -7.81918 -6.40847 -3.85768 1.65513 2.70422 2.78535 3.10281 3.20836 3.24794 3.80172 4.05266 4.43990 4.58067 4.91060 4.94666 5.00201 5.22448 5.31658 5.57811 5.63142 5.74019 5.83222 5.93085 6.12231 6.18457 6.25320 6.28299 6.33427 6.42432 6.47820 6.63924 6.70357 6.74598 6.92115 6.93376 7.02545 7.08926 7.33532 7.48230 7.70238 7.86910 8.41766 8.58564 9.05101 9.52436 9.92904 10.53997 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.006123 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.032423 B = 4571.691102 C = 5690.916002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.139 3.861 4 N -0.434 5.434 5 C -0.342 4.342 6 H 0.103 0.897 7 C 0.042 3.958 8 N -0.846 5.846 9 Si 0.908 3.092 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.455 3.545 14 O -0.611 6.611 15 C -0.090 4.090 16 H 0.094 0.906 17 C -0.093 4.093 18 C -0.045 4.045 19 C -0.014 4.014 20 N -0.388 5.388 21 H 0.444 0.556 22 N -0.102 5.102 23 N -0.258 5.258 24 C -0.002 4.002 25 C -0.021 4.021 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 -2.251 4.788 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.016 3.984 4 N -0.150 5.150 5 C -0.469 4.469 6 H 0.120 0.880 7 C -0.163 4.163 8 N -0.484 5.484 9 Si 0.734 3.266 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.243 3.757 14 O -0.499 6.499 15 C -0.112 4.112 16 H 0.112 0.888 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.149 4.149 20 N -0.107 5.107 21 H 0.289 0.711 22 N -0.080 5.080 23 N -0.124 5.124 24 C -0.142 4.142 25 C -0.060 4.060 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.022 -0.985 4.720 9.359 hybrid contribution 0.337 -0.959 -0.552 1.157 sum 8.359 -1.944 4.168 9.540 Atomic orbital electron populations 1.21581 0.97770 0.99670 1.00285 1.21839 0.93607 0.98389 1.01932 1.21319 0.79904 0.97030 1.00136 1.43861 1.05631 1.60719 1.04801 1.19636 0.92601 1.51979 0.82640 0.87978 1.25138 0.96088 0.95917 0.99195 1.70188 1.13892 1.36958 1.27348 0.86298 0.78958 0.80307 0.81021 1.19973 1.20963 1.19708 1.19686 0.88401 0.83846 0.83769 1.90526 1.69931 1.58024 1.31390 1.21130 0.95018 0.95900 0.99132 0.88814 1.21376 0.91129 1.02292 0.98346 1.20299 0.96661 0.90148 1.01370 1.22049 0.84669 1.00989 1.07211 1.44640 1.09242 1.13270 1.43553 0.71097 1.78506 1.18164 0.95450 1.15906 1.74816 0.95315 1.25184 1.17118 1.21846 0.98387 0.90659 1.03293 1.19851 0.85470 0.96759 1.03970 0.94597 0.93001 0.94395 0.95298 0.87978 0.89126 0.94317 0.92066 0.90785 0.90284 0.89546 0.90191 0.88737 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.91 37.16 0.37 -2.17 16 2 C -0.12 -2.65 5.68 -26.73 -0.15 -2.81 16 3 C 0.14 3.28 4.64 -4.04 -0.02 3.26 16 4 N -0.43 -10.37 2.62 -114.81 -0.30 -10.67 16 5 C -0.34 -8.11 9.21 -14.93 -0.14 -8.25 16 6 H 0.10 2.31 5.89 -52.49 -0.31 2.00 16 7 C 0.04 0.99 4.96 -17.47 -0.09 0.91 16 8 N -0.85 -20.23 8.15 55.50 0.45 -19.77 16 9 Si 0.91 18.79 29.63 -169.99 -5.04 13.75 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.45 10.31 6.68 -10.98 -0.07 10.24 16 14 O -0.61 -15.34 15.90 5.55 0.09 -15.25 16 15 C -0.09 -1.64 1.73 -91.50 -0.16 -1.79 16 16 H 0.09 1.72 6.20 -51.93 -0.32 1.40 16 17 C -0.09 -1.40 4.63 -26.45 -0.12 -1.52 16 18 C -0.05 -0.51 6.30 -27.73 -0.17 -0.69 16 19 C -0.01 -0.19 7.15 -82.50 -0.59 -0.78 16 20 N -0.39 -4.62 6.97 33.39 0.23 -4.38 16 21 H 0.44 3.16 8.96 -190.08 -1.70 1.46 16 22 N -0.10 -1.59 13.40 60.35 0.81 -0.78 16 23 N -0.26 -4.64 12.40 33.16 0.41 -4.23 16 24 C 0.00 -0.04 7.11 -83.12 -0.59 -0.63 16 25 C -0.02 -0.37 5.59 -27.72 -0.15 -0.52 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 31 H 0.09 2.22 5.98 -51.92 -0.31 1.91 16 32 H 0.04 0.93 7.42 -51.93 -0.39 0.54 16 33 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 34 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 35 H 0.08 1.21 8.11 -51.93 -0.42 0.78 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -29.06 314.09 -7.20 -36.27 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.70 Total: 5.08 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.89 Total: -4.75 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.60 Total: -39.84 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.04 Total: 13.75 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.06 -7.20 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283027268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.318 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.44 seconds