Wall clock time and date at job start Tue Mar 31 2020 01:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 N 1.46500 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99977 * 88.75667 * 4 3 2 6 6 H 1.08002 * 119.99672 * 177.66100 * 5 4 3 7 7 C 1.38949 * 120.00199 * 357.66638 * 5 4 3 8 8 N 1.31412 * 120.00001 * 333.60223 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 153.60187 * 7 5 4 10 10 H 1.48493 * 109.47184 * 59.99708 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46827 * 299.99698 * 9 7 5 13 13 C 1.34773 * 119.99774 * 268.75747 * 4 3 2 14 14 O 1.21294 * 120.00237 * 2.54312 * 13 4 3 15 15 C 1.50706 * 120.00081 * 182.53747 * 13 4 3 16 16 H 1.08998 * 109.44756 * 327.63469 * 15 13 4 17 17 C 1.53102 * 109.45284 * 207.69800 * 15 13 4 18 18 C 1.53448 * 109.54105 * 169.89245 * 17 15 13 19 19 C 1.50540 * 108.31967 * 49.73610 * 18 17 15 20 20 N 1.34392 * 129.25350 * 163.42643 * 19 18 17 21 21 H 0.96998 * 126.00945 * 0.25036 * 20 19 18 22 22 N 1.29103 * 107.98710 * 180.25311 * 20 19 18 23 23 N 1.29023 * 110.25976 * 359.93994 * 22 20 19 24 24 C 1.32915 * 108.63215 * 359.96948 * 23 22 20 25 25 C 1.50594 * 129.16319 * 180.10376 * 24 23 22 26 26 H 1.09000 * 109.46697 * 300.00406 * 1 2 3 27 27 H 1.09002 * 109.47203 * 60.00339 * 1 2 3 28 28 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47177 * 120.00005 * 2 1 3 30 30 H 1.09002 * 109.47125 * 240.00232 * 2 1 3 31 31 H 1.09008 * 109.47073 * 300.00146 * 3 2 1 32 32 H 1.08998 * 109.47232 * 59.99419 * 3 2 1 33 33 H 0.96998 * 120.00428 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.45996 * 289.92279 * 17 15 13 35 35 H 1.08996 * 109.46216 * 49.88093 * 17 15 13 36 36 H 1.08997 * 109.71872 * 290.01844 * 18 17 15 37 37 H 1.08996 * 109.70710 * 169.45199 * 18 17 15 38 38 H 1.09008 * 109.68867 * 43.81845 * 25 24 23 39 39 H 1.08997 * 109.69374 * 283.24454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1901 1.4169 -1.1880 6 1 5.2694 1.4551 -1.1896 7 6 3.4957 1.3420 -2.3892 8 7 2.3030 0.7916 -2.4254 9 14 4.2577 2.0237 -3.9525 10 1 5.5333 1.3162 -4.2307 11 1 3.3222 1.8216 -5.0880 12 1 4.5234 3.4747 -3.7817 13 6 4.1794 1.4676 1.1660 14 8 3.5742 1.4436 2.2170 15 6 5.6853 1.5254 1.1649 16 1 6.0684 0.9901 0.2961 17 6 6.2216 0.8737 2.4422 18 6 7.7425 0.7027 2.3317 19 6 8.3362 2.0167 1.8993 20 7 9.6124 2.4338 1.9585 21 1 10.3637 1.9240 2.2998 22 7 9.6627 3.6324 1.4814 23 7 8.4871 4.0166 1.1138 24 6 7.6244 3.0349 1.3559 25 6 6.1403 2.9893 1.1045 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.8183 0.7389 -3.2640 34 1 5.9885 1.5068 3.2983 35 1 5.7553 -0.1025 2.5752 36 1 7.9735 -0.0653 1.5936 37 1 8.1515 0.4158 3.3004 38 1 5.9219 3.4016 0.1193 39 1 5.6205 3.5673 1.8685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283027268.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:23 Heat of formation + Delta-G solvation = 38.090149 kcal Electronic energy + Delta-G solvation = -22384.203948 eV Core-core repulsion = 19135.104159 eV Total energy + Delta-G solvation = -3249.099789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.44078 -40.77186 -37.87114 -36.74037 -34.88850 -34.01633 -33.33222 -31.36562 -31.01584 -27.67000 -26.57210 -25.20503 -24.07305 -23.67065 -22.23707 -21.13866 -20.47051 -19.22870 -18.34791 -18.02322 -17.20799 -16.27478 -16.17585 -15.90006 -15.46932 -15.23598 -14.84496 -14.67666 -14.55267 -14.28644 -13.83059 -13.54320 -13.12165 -13.03668 -12.89928 -12.64509 -12.53477 -12.44578 -12.33088 -12.20534 -12.05411 -12.00594 -11.76133 -11.40361 -11.31599 -11.22457 -10.66888 -10.15192 -9.86780 -9.68299 -8.22427 -5.72491 0.55995 1.42493 1.44457 1.52902 1.58587 1.83252 2.06352 2.32309 2.95924 3.13794 3.37064 3.68402 3.84383 3.95807 4.06865 4.27476 4.38986 4.47601 4.51272 4.57325 4.60941 4.73219 4.76509 4.88231 4.90910 5.03240 5.05825 5.10513 5.14739 5.27514 5.30829 5.35514 5.43207 5.52448 5.65040 5.86670 6.00820 6.06079 6.56640 7.20647 7.40670 7.69545 8.10335 8.72694 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.006123 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.032423 B = 4571.691102 C = 5690.916002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C 0.141 3.859 4 N -0.447 5.447 5 C -0.359 4.359 6 H 0.110 0.890 7 C 0.008 3.992 8 N -0.862 5.862 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.445 3.555 14 O -0.641 6.641 15 C -0.080 4.080 16 H 0.094 0.906 17 C -0.090 4.090 18 C -0.034 4.034 19 C 0.008 3.992 20 N -0.360 5.360 21 H 0.468 0.532 22 N -0.114 5.114 23 N -0.294 5.294 24 C -0.032 4.032 25 C -0.011 4.011 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.013 0.987 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.026 0.974 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.389 -3.468 4.962 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.017 3.983 4 N -0.163 5.163 5 C -0.485 4.485 6 H 0.128 0.872 7 C -0.196 4.196 8 N -0.499 5.499 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.204 1.204 13 C 0.235 3.765 14 O -0.530 6.530 15 C -0.102 4.102 16 H 0.112 0.888 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.129 4.129 20 N -0.082 5.082 21 H 0.318 0.682 22 N -0.093 5.093 23 N -0.159 5.159 24 C -0.172 4.172 25 C -0.051 4.051 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.770 -2.214 4.895 11.150 hybrid contribution -0.223 -0.598 -0.566 0.853 sum 9.547 -2.812 4.329 10.854 Atomic orbital electron populations 1.21499 0.95066 1.01176 1.00704 1.21684 0.95985 0.96886 1.00114 1.21259 0.80467 0.97710 0.98815 1.44096 1.05779 1.60896 1.05484 1.19897 0.93131 1.52689 0.82806 0.87226 1.25787 0.96670 0.95771 1.01339 1.70260 1.14640 1.37044 1.27964 0.85382 0.78364 0.79037 0.77958 1.19349 1.20801 1.20402 1.20490 0.90377 0.82746 0.82933 1.90490 1.71123 1.59177 1.32259 1.21066 0.91594 0.96499 1.01037 0.88807 1.21342 0.94049 1.01504 0.95974 1.20371 0.93332 0.89192 1.04402 1.22232 0.84730 1.00827 1.05102 1.44590 1.09573 1.12241 1.41831 0.68247 1.78420 1.17337 0.96880 1.16650 1.74769 0.96179 1.26457 1.18533 1.21710 0.97820 0.92095 1.05583 1.19593 0.86852 0.96109 1.02535 0.93736 0.92970 0.92344 0.96813 0.89742 0.90206 0.95537 0.91924 0.91766 0.90362 0.87187 0.85930 0.90576 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.91 71.98 0.71 -3.96 16 2 C -0.11 -4.88 5.68 30.59 0.17 -4.71 16 3 C 0.14 6.83 4.64 86.38 0.40 7.23 16 4 N -0.45 -21.85 2.62 -635.52 -1.67 -23.52 16 5 C -0.36 -17.19 9.21 84.04 0.77 -16.42 16 6 H 0.11 4.97 5.89 -2.91 -0.02 4.95 16 7 C 0.01 0.40 4.96 84.93 0.42 0.82 16 8 N -0.86 -41.35 8.15 21.66 0.18 -41.18 16 9 Si 0.97 38.44 29.63 68.60 2.03 40.47 16 10 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 11 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.44 20.61 6.68 87.66 0.59 21.19 16 14 O -0.64 -32.95 15.90 -3.07 -0.05 -33.00 16 15 C -0.08 -2.91 1.73 -11.36 -0.02 -2.93 16 16 H 0.09 3.39 6.20 -2.39 -0.01 3.37 16 17 C -0.09 -2.56 4.63 30.78 0.14 -2.42 16 18 C -0.03 -0.63 6.30 29.95 0.19 -0.44 16 19 C 0.01 0.19 7.15 41.50 0.30 0.49 16 20 N -0.36 -7.39 6.97 -48.27 -0.34 -7.72 16 21 H 0.47 4.65 8.96 -219.69 -1.97 2.69 16 22 N -0.11 -3.37 13.40 37.02 0.50 -2.87 16 23 N -0.29 -10.39 12.40 -48.99 -0.61 -11.00 16 24 C -0.03 -1.04 7.11 41.75 0.30 -0.75 16 25 C -0.01 -0.40 5.59 29.95 0.17 -0.23 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 31 H 0.08 4.02 5.98 -2.38 -0.01 4.00 16 32 H 0.03 1.31 7.42 -2.39 -0.02 1.30 16 33 H 0.27 12.38 8.31 -92.71 -0.77 11.61 16 34 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 35 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.07 2.66 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -64.19 314.09 3.29 -60.90 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.89 Total: 20.05 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.14 Total: -2.12 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.94 Total: -86.29 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -64.19 3.29 -60.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283027268.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.989 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds