Wall clock time and date at job start Tue Mar 31 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 N 1.46494 * 109.47181 * 185.54209 * 3 2 1 5 5 C 1.37098 * 120.00473 * 88.05636 * 4 3 2 6 6 H 1.07992 * 120.00501 * 182.33308 * 5 4 3 7 7 C 1.38952 * 119.99544 * 2.33663 * 5 4 3 8 8 N 1.31411 * 120.00251 * 333.54412 * 7 5 4 9 9 Si 1.86806 * 119.99892 * 153.54931 * 7 5 4 10 10 H 1.48492 * 109.47161 * 94.99422 * 9 7 5 11 11 H 1.48504 * 109.46950 * 214.99394 * 9 7 5 12 12 H 1.48500 * 109.46840 * 334.99304 * 9 7 5 13 13 C 1.34782 * 119.99970 * 268.05269 * 4 3 2 14 14 O 1.21291 * 119.99521 * 5.74392 * 13 4 3 15 15 C 1.50701 * 119.99961 * 185.73863 * 13 4 3 16 16 H 1.08996 * 109.43313 * 45.91396 * 15 13 4 17 17 C 1.53107 * 109.45007 * 165.86094 * 15 13 4 18 18 C 1.53433 * 109.53866 * 190.09497 * 17 15 13 19 19 C 1.50541 * 108.32306 * 310.28449 * 18 17 15 20 20 N 1.34390 * 129.25813 * 196.42953 * 19 18 17 21 21 H 0.97003 * 126.00490 * 359.81034 * 20 19 18 22 22 N 1.29104 * 107.98736 * 179.84925 * 20 19 18 23 23 N 1.29018 * 110.25932 * 0.06757 * 22 20 19 24 24 C 1.32915 * 108.63628 * 0.02562 * 23 22 20 25 25 C 1.50589 * 129.16235 * 179.77411 * 24 23 22 26 26 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47163 * 299.99784 * 1 2 3 28 28 H 1.08999 * 109.47534 * 60.00036 * 1 2 3 29 29 H 1.09003 * 109.46938 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47534 * 119.99964 * 2 1 3 31 31 H 1.09000 * 109.46950 * 65.53803 * 3 2 1 32 32 H 1.08999 * 109.46707 * 305.54103 * 3 2 1 33 33 H 0.97001 * 120.00249 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46286 * 70.06960 * 17 15 13 35 35 H 1.09006 * 109.45608 * 310.10968 * 17 15 13 36 36 H 1.08993 * 109.69813 * 69.98876 * 18 17 15 37 37 H 1.09005 * 109.69199 * 190.54404 * 18 17 15 38 38 H 1.09004 * 109.69510 * 316.32032 * 25 24 23 39 39 H 1.09002 * 109.69383 * 76.86282 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4988 1.4447 -0.1334 5 6 4.0735 1.4437 -1.3781 6 1 5.1483 1.4072 -1.4767 7 6 3.2729 1.4896 -2.5129 8 7 2.0444 1.0251 -2.4696 9 14 3.9430 2.2117 -4.1001 10 1 4.4773 1.1203 -4.9536 11 1 2.8533 2.9164 -4.8221 12 1 5.0309 3.1724 -3.7862 13 6 4.2762 1.4478 0.9677 14 8 3.7723 1.3436 2.0660 15 6 5.7714 1.5805 0.8340 16 1 6.0031 2.3815 0.1320 17 6 6.3783 1.9088 2.2008 18 6 7.8541 2.2915 2.0284 19 6 8.5215 1.2363 1.1873 20 7 9.8309 0.9830 1.0220 21 1 10.5621 1.4666 1.4371 22 7 9.9446 -0.0166 0.2128 23 7 8.7786 -0.4260 -0.1580 24 6 7.8565 0.3316 0.4272 25 6 6.3565 0.2611 0.3148 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.7599 1.9269 0.9354 32 1 1.5978 1.9842 -0.8362 33 1 1.4856 1.0568 -3.2619 34 1 6.3027 1.0370 2.8506 35 1 5.8368 2.7426 2.6477 36 1 7.9272 3.2584 1.5306 37 1 8.3365 2.3434 3.0045 38 1 6.0725 0.1183 -0.7278 39 1 5.9818 -0.5686 0.9144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283027271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:29 Heat of formation + Delta-G solvation = 56.735793 kcal Electronic energy + Delta-G solvation = -22466.671066 eV Core-core repulsion = 19218.379813 eV Total energy + Delta-G solvation = -3248.291253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.25367 -39.06127 -36.36155 -34.99824 -33.70294 -32.28748 -31.52180 -30.00920 -29.77456 -25.85081 -24.89864 -23.83043 -22.80575 -22.39057 -20.50107 -19.60236 -18.83940 -18.04552 -16.78832 -16.32009 -15.89839 -14.73788 -14.39540 -14.30721 -14.00338 -13.65166 -13.56714 -13.15519 -13.06473 -12.83757 -12.16572 -11.89862 -11.70212 -11.50614 -11.37352 -11.18380 -11.03429 -10.96960 -10.72351 -10.54097 -10.40846 -10.34576 -10.21191 -10.07669 -9.94935 -9.47744 -8.75749 -8.65919 -8.33445 -7.83932 -6.42339 -3.83174 1.67820 2.74007 2.80792 3.08881 3.21861 3.24907 3.81637 4.06035 4.46989 4.60214 4.90193 4.95692 5.03267 5.23731 5.33668 5.57999 5.64546 5.76256 5.85382 5.94427 6.15737 6.18996 6.28624 6.30666 6.35289 6.47451 6.51998 6.68308 6.73669 6.75606 6.93490 6.94995 7.06487 7.12046 7.36008 7.52396 7.71428 7.81886 8.42033 8.61811 9.05463 9.53677 9.93971 10.54412 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.006287 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.648122 B = 4452.540294 C = 5426.159524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.133 3.867 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.106 0.894 7 C 0.043 3.957 8 N -0.844 5.844 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.453 3.547 14 O -0.612 6.612 15 C -0.086 4.086 16 H 0.089 0.911 17 C -0.092 4.092 18 C -0.045 4.045 19 C -0.017 4.017 20 N -0.389 5.389 21 H 0.444 0.556 22 N -0.102 5.102 23 N -0.257 5.257 24 C -0.001 4.001 25 C -0.027 4.027 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.268 0.732 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 3.663 4.880 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.010 3.990 4 N -0.151 5.151 5 C -0.469 4.469 6 H 0.124 0.876 7 C -0.163 4.163 8 N -0.482 5.482 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.241 3.759 14 O -0.499 6.499 15 C -0.108 4.108 16 H 0.108 0.892 17 C -0.131 4.131 18 C -0.085 4.085 19 C -0.152 4.152 20 N -0.108 5.108 21 H 0.288 0.712 22 N -0.081 5.081 23 N -0.124 5.124 24 C -0.141 4.141 25 C -0.067 4.067 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.215 2.549 4.424 9.672 hybrid contribution 0.202 1.271 -0.238 1.308 sum 8.417 3.819 4.185 10.146 Atomic orbital electron populations 1.21565 0.97552 0.99639 1.00435 1.21630 0.93868 0.98315 1.01106 1.21545 0.80322 0.97204 0.99960 1.43871 1.05412 1.60786 1.05005 1.19737 0.93456 1.51887 0.81805 0.87620 1.25152 0.95566 0.96265 0.99330 1.70237 1.08962 1.39135 1.29832 0.86263 0.78874 0.79791 0.81922 1.20391 1.20710 1.19442 1.19680 0.87813 0.84095 0.84335 1.90524 1.75252 1.57736 1.26430 1.21055 0.94242 0.98174 0.97289 0.89235 1.21368 0.91412 1.03003 0.97304 1.20294 0.96145 0.94702 0.97313 1.22055 0.83913 1.03788 1.05450 1.44641 1.07818 1.24768 1.33528 0.71153 1.78509 1.19124 1.02053 1.08373 1.74825 0.94591 1.22720 1.20216 1.21916 0.98148 0.95348 0.98665 1.20031 0.84378 0.97745 1.04497 0.94496 0.94661 0.92626 0.89349 0.95200 0.94584 0.88051 0.92155 0.90951 0.90073 0.89667 0.90235 0.87709 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.91 37.15 0.37 -2.17 16 2 C -0.11 -2.48 5.59 -26.73 -0.15 -2.63 16 3 C 0.13 3.12 4.63 -4.04 -0.02 3.10 16 4 N -0.43 -10.35 2.63 -114.81 -0.30 -10.65 16 5 C -0.34 -8.09 8.57 -14.93 -0.13 -8.22 16 6 H 0.11 2.39 4.79 -52.49 -0.25 2.14 16 7 C 0.04 1.00 5.05 -17.47 -0.09 0.91 16 8 N -0.84 -20.18 8.35 55.50 0.46 -19.72 16 9 Si 0.91 18.72 29.63 -169.99 -5.04 13.68 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 13 C 0.45 10.25 6.85 -10.98 -0.08 10.18 16 14 O -0.61 -15.31 15.65 5.55 0.09 -15.22 16 15 C -0.09 -1.56 1.64 -91.52 -0.15 -1.71 16 16 H 0.09 1.61 7.39 -51.93 -0.38 1.23 16 17 C -0.09 -1.38 4.56 -26.45 -0.12 -1.50 16 18 C -0.05 -0.51 6.30 -27.74 -0.17 -0.68 16 19 C -0.02 -0.23 7.15 -82.50 -0.59 -0.82 16 20 N -0.39 -4.68 6.97 33.39 0.23 -4.45 16 21 H 0.44 3.21 8.96 -190.07 -1.70 1.50 16 22 N -0.10 -1.62 13.40 60.35 0.81 -0.81 16 23 N -0.26 -4.73 12.40 33.16 0.41 -4.32 16 24 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 25 C -0.03 -0.49 5.23 -27.74 -0.15 -0.64 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 2.16 6.63 -51.93 -0.34 1.82 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.86 7.45 -51.93 -0.39 0.47 16 32 H 0.10 2.47 5.70 -51.93 -0.30 2.18 16 33 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 34 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 35 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 2.06 5.96 -51.93 -0.31 1.76 16 39 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -29.03 311.21 -7.11 -36.14 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.61 Total: 5.46 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.86 Total: -4.80 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 1.61 Total: -39.95 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.04 Total: 13.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.03 -7.11 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283027271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.880 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds