Wall clock time and date at job start Tue Mar 31 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47147 * 2 1 4 4 N 1.46494 * 109.47181 * 185.54209 * 3 2 1 5 5 C 1.37098 * 120.00473 * 88.05636 * 4 3 2 6 6 H 1.07992 * 120.00501 * 182.33308 * 5 4 3 7 7 C 1.38952 * 119.99544 * 2.33663 * 5 4 3 8 8 N 1.31411 * 120.00251 * 333.54412 * 7 5 4 9 9 Si 1.86806 * 119.99892 * 153.54931 * 7 5 4 10 10 H 1.48492 * 109.47161 * 94.99422 * 9 7 5 11 11 H 1.48504 * 109.46950 * 214.99394 * 9 7 5 12 12 H 1.48500 * 109.46840 * 334.99304 * 9 7 5 13 13 C 1.34782 * 119.99970 * 268.05269 * 4 3 2 14 14 O 1.21291 * 119.99521 * 5.74392 * 13 4 3 15 15 C 1.50701 * 119.99961 * 185.73863 * 13 4 3 16 16 H 1.08996 * 109.43313 * 45.91396 * 15 13 4 17 17 C 1.53107 * 109.45007 * 165.86094 * 15 13 4 18 18 C 1.53433 * 109.53866 * 190.09497 * 17 15 13 19 19 C 1.50541 * 108.32306 * 310.28449 * 18 17 15 20 20 N 1.34390 * 129.25813 * 196.42953 * 19 18 17 21 21 H 0.97003 * 126.00490 * 359.81034 * 20 19 18 22 22 N 1.29104 * 107.98736 * 179.84925 * 20 19 18 23 23 N 1.29018 * 110.25932 * 0.06757 * 22 20 19 24 24 C 1.32915 * 108.63628 * 0.02562 * 23 22 20 25 25 C 1.50589 * 129.16235 * 179.77411 * 24 23 22 26 26 H 1.09005 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47163 * 299.99784 * 1 2 3 28 28 H 1.08999 * 109.47534 * 60.00036 * 1 2 3 29 29 H 1.09003 * 109.46938 * 240.00476 * 2 1 3 30 30 H 1.08999 * 109.47534 * 119.99964 * 2 1 3 31 31 H 1.09000 * 109.46950 * 65.53803 * 3 2 1 32 32 H 1.08999 * 109.46707 * 305.54103 * 3 2 1 33 33 H 0.97001 * 120.00249 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46286 * 70.06960 * 17 15 13 35 35 H 1.09006 * 109.45608 * 310.10968 * 17 15 13 36 36 H 1.08993 * 109.69813 * 69.98876 * 18 17 15 37 37 H 1.09005 * 109.69199 * 190.54404 * 18 17 15 38 38 H 1.09004 * 109.69510 * 316.32032 * 25 24 23 39 39 H 1.09002 * 109.69383 * 76.86282 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4988 1.4447 -0.1334 5 6 4.0735 1.4437 -1.3781 6 1 5.1483 1.4072 -1.4767 7 6 3.2729 1.4896 -2.5129 8 7 2.0444 1.0251 -2.4696 9 14 3.9430 2.2117 -4.1001 10 1 4.4773 1.1203 -4.9536 11 1 2.8533 2.9164 -4.8221 12 1 5.0309 3.1724 -3.7862 13 6 4.2762 1.4478 0.9677 14 8 3.7723 1.3436 2.0660 15 6 5.7714 1.5805 0.8340 16 1 6.0031 2.3815 0.1320 17 6 6.3783 1.9088 2.2008 18 6 7.8541 2.2915 2.0284 19 6 8.5215 1.2363 1.1873 20 7 9.8309 0.9830 1.0220 21 1 10.5621 1.4666 1.4371 22 7 9.9446 -0.0166 0.2128 23 7 8.7786 -0.4260 -0.1580 24 6 7.8565 0.3316 0.4272 25 6 6.3565 0.2611 0.3148 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.7599 1.9269 0.9354 32 1 1.5978 1.9842 -0.8362 33 1 1.4856 1.0568 -3.2619 34 1 6.3027 1.0370 2.8506 35 1 5.8368 2.7426 2.6477 36 1 7.9272 3.2584 1.5306 37 1 8.3365 2.3434 3.0045 38 1 6.0725 0.1183 -0.7278 39 1 5.9818 -0.5686 0.9144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283027271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:29 Heat of formation + Delta-G solvation = 38.567408 kcal Electronic energy + Delta-G solvation = -22467.458906 eV Core-core repulsion = 19218.379813 eV Total energy + Delta-G solvation = -3249.079093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.43335 -40.78145 -37.83339 -36.76834 -34.88898 -34.02774 -33.33068 -31.35911 -30.99381 -27.59586 -26.60479 -25.18065 -24.04666 -23.68471 -22.20464 -21.15334 -20.42208 -19.28036 -18.34519 -18.02853 -17.19623 -16.19607 -16.16220 -15.98907 -15.40673 -15.22625 -14.89442 -14.71975 -14.51952 -14.29270 -13.77167 -13.53799 -13.12150 -13.01506 -12.86473 -12.64877 -12.48627 -12.35072 -12.27335 -12.10701 -12.03886 -12.00011 -11.87460 -11.40321 -11.31101 -11.24807 -10.61921 -10.16204 -9.85475 -9.69987 -8.23857 -5.69691 0.56836 1.42012 1.45007 1.52277 1.60895 1.84307 2.06847 2.33556 3.01601 3.11641 3.36014 3.70808 3.85118 3.98073 4.08152 4.26078 4.40328 4.48002 4.52134 4.55216 4.62865 4.75486 4.77333 4.89597 4.92894 5.03841 5.07968 5.12967 5.16061 5.28538 5.33118 5.38625 5.44426 5.55161 5.69324 5.85235 5.95336 6.07202 6.57153 7.21174 7.41870 7.70987 8.11527 8.73561 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.006287 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.648122 B = 4452.540294 C = 5426.159524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C 0.135 3.865 4 N -0.447 5.447 5 C -0.357 4.357 6 H 0.113 0.887 7 C 0.006 3.994 8 N -0.862 5.862 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.442 3.558 14 O -0.640 6.640 15 C -0.077 4.077 16 H 0.095 0.905 17 C -0.089 4.089 18 C -0.034 4.034 19 C 0.007 3.993 20 N -0.360 5.360 21 H 0.467 0.533 22 N -0.115 5.115 23 N -0.295 5.295 24 C -0.033 4.033 25 C -0.016 4.016 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.012 0.988 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.270 0.730 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 5.221 5.347 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.012 3.988 4 N -0.163 5.163 5 C -0.484 4.484 6 H 0.130 0.870 7 C -0.198 4.198 8 N -0.499 5.499 9 Si 0.792 3.208 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.232 3.768 14 O -0.530 6.530 15 C -0.098 4.098 16 H 0.113 0.887 17 C -0.127 4.127 18 C -0.073 4.073 19 C -0.129 4.129 20 N -0.082 5.082 21 H 0.318 0.682 22 N -0.093 5.093 23 N -0.161 5.161 24 C -0.173 4.173 25 C -0.055 4.055 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.892 4.114 4.894 11.778 hybrid contribution -0.327 0.762 -0.335 0.894 sum 9.565 4.876 4.559 11.664 Atomic orbital electron populations 1.21474 0.94750 1.01043 1.00959 1.21485 0.96325 0.97103 0.98980 1.21487 0.80863 0.97607 0.98892 1.44114 1.05608 1.60948 1.05640 1.19985 0.93945 1.52512 0.81927 0.86967 1.25829 0.95984 0.96220 1.01735 1.70306 1.09724 1.39302 1.30583 0.85330 0.78256 0.78781 0.78465 1.20848 1.20571 1.18915 1.20493 0.89736 0.83027 0.83562 1.90488 1.76338 1.58831 1.27355 1.21011 0.90996 0.98154 0.99667 0.88712 1.21330 0.94078 1.02611 0.94721 1.20389 0.93000 0.94512 0.99374 1.22265 0.84099 1.02747 1.03825 1.44591 1.08128 1.23496 1.32029 0.68247 1.78419 1.18241 1.03255 1.09434 1.74775 0.95475 1.24139 1.21685 1.21756 0.97348 0.97324 1.00856 1.19725 0.85972 0.97190 1.02637 0.92671 0.93428 0.92717 0.91632 0.96872 0.95524 0.88853 0.91997 0.92165 0.89868 0.86968 0.85961 0.90031 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 9.91 71.98 0.71 -3.96 16 2 C -0.10 -4.62 5.59 30.59 0.17 -4.45 16 3 C 0.13 6.51 4.63 86.38 0.40 6.91 16 4 N -0.45 -21.85 2.63 -635.54 -1.67 -23.52 16 5 C -0.36 -17.17 8.57 84.04 0.72 -16.45 16 6 H 0.11 5.15 4.79 -2.91 -0.01 5.13 16 7 C 0.01 0.30 5.05 84.93 0.43 0.73 16 8 N -0.86 -41.69 8.35 21.66 0.18 -41.51 16 9 Si 0.97 38.36 29.63 68.60 2.03 40.39 16 10 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 13 C 0.44 20.43 6.85 87.66 0.60 21.03 16 14 O -0.64 -32.74 15.65 -3.06 -0.05 -32.79 16 15 C -0.08 -2.76 1.64 -11.37 -0.02 -2.78 16 16 H 0.09 3.32 7.39 -2.39 -0.02 3.30 16 17 C -0.09 -2.49 4.56 30.78 0.14 -2.35 16 18 C -0.03 -0.61 6.30 29.94 0.19 -0.42 16 19 C 0.01 0.18 7.15 41.50 0.30 0.48 16 20 N -0.36 -7.47 6.97 -48.27 -0.34 -7.81 16 21 H 0.47 4.69 8.96 -219.68 -1.97 2.73 16 22 N -0.11 -3.45 13.40 37.02 0.50 -2.96 16 23 N -0.29 -10.72 12.40 -48.99 -0.61 -11.32 16 24 C -0.03 -1.09 7.11 41.75 0.30 -0.79 16 25 C -0.02 -0.58 5.23 29.94 0.16 -0.42 16 26 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 3.31 6.63 -2.39 -0.02 3.30 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.03 1.30 7.45 -2.39 -0.02 1.29 16 32 H 0.09 4.66 5.70 -2.39 -0.01 4.65 16 33 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 34 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 35 H 0.08 2.33 8.00 -2.38 -0.02 2.31 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.08 3.36 5.96 -2.38 -0.01 3.35 16 39 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 Total: -1.00 -64.73 311.21 3.26 -61.48 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.89 Total: 20.51 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 4.09 Total: -2.48 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.94 Total: -87.11 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.05 Total: -32.79 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -64.73 3.26 -61.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283027271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.044 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds