Wall clock time and date at job start Tue Mar 31 2020 00:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 N 1.46505 * 115.55019 * 304.89626 * 3 2 1 5 5 C 1.34774 * 120.00010 * 294.59071 * 4 3 2 6 6 O 1.21595 * 119.99984 * 354.98332 * 5 4 3 7 7 N 1.34772 * 120.00227 * 174.97667 * 5 4 3 8 8 C 1.40193 * 120.00547 * 180.02562 * 7 5 4 9 9 C 1.40409 * 125.97038 * 0.02562 * 8 7 5 10 10 C 1.35242 * 107.86638 * 179.71518 * 9 8 7 11 11 N 1.34962 * 107.85796 * 0.42558 * 10 9 8 12 12 C 1.46507 * 125.97530 * 179.83882 * 11 10 9 13 13 C 1.50698 * 109.47091 * 124.71342 * 12 11 10 14 14 H 1.08007 * 120.00197 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99890 * 359.71636 * 15 13 12 17 17 Si 1.86798 * 120.00010 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47194 * 179.72325 * 17 15 13 19 19 H 1.48502 * 109.46705 * 299.72112 * 17 15 13 20 20 H 1.48497 * 109.47270 * 59.71641 * 17 15 13 21 21 N 1.31208 * 125.97662 * 179.97438 * 8 7 5 22 22 C 1.53000 * 117.50020 * 90.57012 * 3 2 1 23 23 C 1.53007 * 117.49723 * 159.23036 * 3 2 1 24 24 H 1.08999 * 109.47062 * 305.24341 * 1 2 3 25 25 H 1.08998 * 109.46933 * 65.24151 * 1 2 3 26 26 H 1.08994 * 109.46926 * 185.24474 * 1 2 3 27 27 H 1.08997 * 109.47268 * 239.99932 * 2 1 3 28 28 H 1.09003 * 109.46913 * 119.99706 * 2 1 3 29 29 H 0.96994 * 120.00026 * 114.59633 * 4 3 2 30 30 H 0.97007 * 119.99840 * 0.02562 * 7 5 4 31 31 H 1.07997 * 126.06335 * 0.02562 * 9 8 7 32 32 H 1.08000 * 126.07062 * 180.25572 * 10 9 8 33 33 H 1.09001 * 109.46851 * 4.71634 * 12 11 10 34 34 H 1.08997 * 109.46736 * 244.71393 * 12 11 10 35 35 H 0.96996 * 119.99841 * 0.28541 * 16 15 13 36 36 H 1.09006 * 117.49958 * 214.99802 * 22 3 2 37 37 H 1.08999 * 117.50053 * 0.02562 * 22 3 2 38 38 H 1.08996 * 117.49635 * 359.97173 * 23 3 2 39 39 H 1.08999 * 117.50033 * 144.97335 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5376 2.2903 -1.0841 5 6 1.8683 2.0169 -2.3618 6 8 2.6556 1.1237 -2.6082 7 7 1.3261 2.7335 -3.3662 8 6 1.6696 2.4488 -4.6953 9 6 2.5598 1.4501 -5.1213 10 6 2.6154 1.4923 -6.4719 11 7 1.8009 2.4844 -6.8888 12 6 1.5657 2.8773 -8.2805 13 6 0.0878 2.8336 -8.5719 14 1 -0.6069 2.5420 -7.7980 15 6 -0.3775 3.1650 -9.8267 16 7 0.4679 3.5246 -10.7678 17 14 -2.2095 3.1116 -10.1877 18 1 -2.4484 3.5156 -11.5966 19 1 -2.7157 1.7317 -9.9759 20 1 -2.9208 4.0449 -9.2777 21 7 1.2146 3.0684 -5.7586 22 6 2.2882 2.1041 1.3571 23 6 3.4719 1.6856 0.4813 24 1 -0.3633 0.5930 0.8393 25 1 -0.3633 0.4304 -0.9332 26 1 -0.3633 -1.0233 0.0939 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.9672 3.0484 -0.8824 30 1 0.6982 3.4463 -3.1696 31 1 3.1001 0.7660 -4.4837 32 1 3.2085 0.8484 -7.1044 33 1 2.0876 2.1891 -8.9454 34 1 1.9378 3.8893 -8.4400 35 1 1.4191 3.5527 -10.5802 36 1 2.0777 3.1702 1.4433 37 1 2.0886 1.5116 2.2499 38 1 4.0504 0.8179 0.7983 39 1 4.0403 2.4760 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296765344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:09 Heat of formation + Delta-G solvation = 74.621184 kcal Electronic energy + Delta-G solvation = -21125.042989 eV Core-core repulsion = 17877.527305 eV Total energy + Delta-G solvation = -3247.515684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81988 -39.90645 -37.91334 -34.70166 -33.74069 -32.80175 -32.10607 -30.59186 -29.32409 -26.24379 -24.26676 -23.41131 -22.76455 -22.16568 -20.72733 -19.85597 -19.61512 -17.97299 -17.16369 -16.79971 -16.10089 -15.71982 -15.09887 -14.66501 -14.46103 -14.04275 -13.94496 -13.77002 -13.61718 -13.11745 -12.57429 -12.41706 -12.23386 -11.83409 -11.79328 -11.78181 -11.30869 -11.15214 -10.97877 -10.79892 -10.42687 -10.32503 -10.15482 -10.00553 -9.65006 -9.17351 -8.96349 -8.57021 -8.15654 -7.45109 -6.56904 -4.30800 2.28995 2.61442 3.07277 3.38290 3.40047 3.44533 3.50460 3.59713 3.81238 4.21354 4.35396 4.42331 4.56083 4.68274 5.10358 5.16694 5.18434 5.28936 5.32400 5.46019 5.59115 5.67940 5.74625 5.79244 5.84267 5.98696 6.10960 6.18676 6.38257 6.48102 6.50039 6.68783 6.79796 6.99061 7.45092 7.65254 7.87023 7.94097 8.36158 8.58050 8.60905 8.65566 9.37422 10.80599 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.003343 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.052908 B = 8373.518495 C = 8795.303357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C 0.128 3.872 4 N -0.714 5.714 5 C 0.716 3.284 6 O -0.559 6.559 7 N -0.645 5.645 8 C 0.278 3.722 9 C -0.283 4.283 10 C 0.050 3.950 11 N -0.319 5.319 12 C 0.250 3.750 13 C -0.607 4.607 14 H 0.063 0.937 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.306 5.306 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.398 0.602 30 H 0.406 0.594 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.267 0.733 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -3.686 22.885 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C 0.040 3.960 4 N -0.369 5.369 5 C 0.416 3.584 6 O -0.434 6.434 7 N -0.295 5.295 8 C 0.024 3.976 9 C -0.315 4.315 10 C -0.100 4.100 11 N -0.101 5.101 12 C 0.132 3.868 13 C -0.646 4.646 14 H 0.081 0.919 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.212 1.212 21 N -0.137 5.137 22 C -0.211 4.211 23 C -0.210 4.210 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.241 0.759 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.615 -3.303 20.891 21.212 hybrid contribution 1.085 -0.036 1.625 1.954 sum 2.700 -3.339 22.516 22.922 Atomic orbital electron populations 1.21659 0.95289 1.01509 1.01854 1.21292 0.96211 0.92713 1.03216 1.20360 0.97771 0.91437 0.86472 1.44331 1.55723 1.33327 1.03554 1.15587 0.80946 0.81950 0.79961 1.90855 1.37055 1.33112 1.82332 1.41399 1.47875 1.38093 1.02109 1.18782 0.98014 0.97167 0.83632 1.21527 1.09687 1.06690 0.93559 1.22553 0.97418 0.94479 0.95546 1.48751 1.30787 1.24091 1.06482 1.19740 0.99472 0.96317 0.71299 1.22114 0.90770 1.51437 1.00254 0.91852 1.25925 1.07391 0.93007 0.91889 1.70848 1.04193 1.43910 1.35136 0.83419 0.73223 0.76726 0.76249 1.20533 1.21239 1.21156 1.77340 1.22552 1.23118 0.90668 1.23374 1.02919 1.01411 0.93386 1.23351 0.91425 1.03765 1.02449 0.92870 0.92695 0.92664 0.89998 0.90986 0.76778 0.75937 0.82017 0.81580 0.93653 0.94841 0.92270 0.88420 0.87734 0.88085 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.70 37.16 0.36 -0.93 16 2 C -0.10 -0.91 5.75 -26.73 -0.15 -1.07 16 3 C 0.13 1.20 1.68 -131.81 -0.22 0.98 16 4 N -0.71 -7.39 5.02 -52.41 -0.26 -7.66 16 5 C 0.72 10.59 8.39 -86.92 -0.73 9.86 16 6 O -0.56 -10.02 12.61 5.28 0.07 -9.95 16 7 N -0.64 -10.17 5.45 -15.51 -0.08 -10.25 16 8 C 0.28 5.71 8.11 -154.36 -1.25 4.46 16 9 C -0.28 -5.75 9.61 -39.83 -0.38 -6.14 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 11 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 12 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 13 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 14 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 15 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 16 N -0.91 -26.54 13.65 55.43 0.76 -25.79 16 17 Si 1.08 25.06 29.90 -169.99 -5.08 19.98 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 N -0.31 -7.19 12.42 31.44 0.39 -6.80 16 22 C -0.17 -1.16 10.15 -26.69 -0.27 -1.43 16 23 C -0.17 -1.52 10.18 -26.69 -0.27 -1.80 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.58 7.97 -51.93 -0.41 0.17 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.01 7.34 -51.93 -0.38 0.63 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.40 3.00 8.85 -40.82 -0.36 2.64 16 30 H 0.41 5.20 8.84 -40.82 -0.36 4.84 16 31 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 32 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 34 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 35 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -33.83 334.21 -8.51 -42.34 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.54 Total: 6.83 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.56 Total: -5.92 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.57 Total: -58.32 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.83 -8.51 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296765344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.959 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds