Wall clock time and date at job start Tue Mar 31 2020 00:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 N 1.46505 * 115.55019 * 304.89626 * 3 2 1 5 5 C 1.34774 * 120.00010 * 294.59071 * 4 3 2 6 6 O 1.21595 * 119.99984 * 354.98332 * 5 4 3 7 7 N 1.34772 * 120.00227 * 174.97667 * 5 4 3 8 8 C 1.40193 * 120.00547 * 180.02562 * 7 5 4 9 9 C 1.40409 * 125.97038 * 0.02562 * 8 7 5 10 10 C 1.35242 * 107.86638 * 179.71518 * 9 8 7 11 11 N 1.34962 * 107.85796 * 0.42558 * 10 9 8 12 12 C 1.46507 * 125.97530 * 179.83882 * 11 10 9 13 13 C 1.50698 * 109.47091 * 124.71342 * 12 11 10 14 14 H 1.08007 * 120.00197 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99890 * 359.71636 * 15 13 12 17 17 Si 1.86798 * 120.00010 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47194 * 179.72325 * 17 15 13 19 19 H 1.48502 * 109.46705 * 299.72112 * 17 15 13 20 20 H 1.48497 * 109.47270 * 59.71641 * 17 15 13 21 21 N 1.31208 * 125.97662 * 179.97438 * 8 7 5 22 22 C 1.53000 * 117.50020 * 90.57012 * 3 2 1 23 23 C 1.53007 * 117.49723 * 159.23036 * 3 2 1 24 24 H 1.08999 * 109.47062 * 305.24341 * 1 2 3 25 25 H 1.08998 * 109.46933 * 65.24151 * 1 2 3 26 26 H 1.08994 * 109.46926 * 185.24474 * 1 2 3 27 27 H 1.08997 * 109.47268 * 239.99932 * 2 1 3 28 28 H 1.09003 * 109.46913 * 119.99706 * 2 1 3 29 29 H 0.96994 * 120.00026 * 114.59633 * 4 3 2 30 30 H 0.97007 * 119.99840 * 0.02562 * 7 5 4 31 31 H 1.07997 * 126.06335 * 0.02562 * 9 8 7 32 32 H 1.08000 * 126.07062 * 180.25572 * 10 9 8 33 33 H 1.09001 * 109.46851 * 4.71634 * 12 11 10 34 34 H 1.08997 * 109.46736 * 244.71393 * 12 11 10 35 35 H 0.96996 * 119.99841 * 0.28541 * 16 15 13 36 36 H 1.09006 * 117.49958 * 214.99802 * 22 3 2 37 37 H 1.08999 * 117.50053 * 0.02562 * 22 3 2 38 38 H 1.08996 * 117.49635 * 359.97173 * 23 3 2 39 39 H 1.08999 * 117.50033 * 144.97335 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5376 2.2903 -1.0841 5 6 1.8683 2.0169 -2.3618 6 8 2.6556 1.1237 -2.6082 7 7 1.3261 2.7335 -3.3662 8 6 1.6696 2.4488 -4.6953 9 6 2.5598 1.4501 -5.1213 10 6 2.6154 1.4923 -6.4719 11 7 1.8009 2.4844 -6.8888 12 6 1.5657 2.8773 -8.2805 13 6 0.0878 2.8336 -8.5719 14 1 -0.6069 2.5420 -7.7980 15 6 -0.3775 3.1650 -9.8267 16 7 0.4679 3.5246 -10.7678 17 14 -2.2095 3.1116 -10.1877 18 1 -2.4484 3.5156 -11.5966 19 1 -2.7157 1.7317 -9.9759 20 1 -2.9208 4.0449 -9.2777 21 7 1.2146 3.0684 -5.7586 22 6 2.2882 2.1041 1.3571 23 6 3.4719 1.6856 0.4813 24 1 -0.3633 0.5930 0.8393 25 1 -0.3633 0.4304 -0.9332 26 1 -0.3633 -1.0233 0.0939 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.9672 3.0484 -0.8824 30 1 0.6982 3.4463 -3.1696 31 1 3.1001 0.7660 -4.4837 32 1 3.2085 0.8484 -7.1044 33 1 2.0876 2.1891 -8.9454 34 1 1.9378 3.8893 -8.4400 35 1 1.4191 3.5527 -10.5802 36 1 2.0777 3.1702 1.4433 37 1 2.0886 1.5116 2.2499 38 1 4.0504 0.8179 0.7983 39 1 4.0403 2.4760 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296765344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:08 Heat of formation + Delta-G solvation = 52.407675 kcal Electronic energy + Delta-G solvation = -21126.006240 eV Core-core repulsion = 17877.527305 eV Total energy + Delta-G solvation = -3248.478934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.31302 -41.14162 -38.84852 -36.33339 -35.51681 -33.97696 -32.81464 -32.30913 -30.99827 -28.16483 -25.35017 -24.86721 -23.84552 -23.17077 -22.28417 -21.31569 -20.57690 -19.26730 -19.14475 -18.22870 -17.21915 -16.83597 -16.48361 -16.02314 -15.73258 -15.58387 -15.40659 -15.04286 -14.77042 -14.30551 -14.15638 -13.91273 -13.70198 -13.24509 -13.22109 -12.61740 -12.49301 -12.38556 -12.08624 -12.02503 -11.95402 -11.70661 -11.63107 -11.24761 -11.00574 -10.80329 -10.69604 -10.07022 -9.80329 -9.14980 -8.77243 -6.56210 0.98691 1.04428 1.50879 1.57471 1.65036 1.79001 2.00054 2.36153 2.48632 2.81772 3.00732 3.06089 3.65656 3.85803 3.95044 3.99477 4.13989 4.37925 4.50789 4.56258 4.60355 4.70679 4.77330 4.78956 4.85836 4.90074 5.03986 5.09725 5.11632 5.23496 5.25855 5.36890 5.54156 5.64692 5.78852 5.85239 5.95522 6.27003 6.41686 6.69796 7.08622 7.19810 7.44451 8.58060 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.003343 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.052908 B = 8373.518495 C = 8795.303357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C 0.101 3.899 4 N -0.693 5.693 5 C 0.714 3.286 6 O -0.592 6.592 7 N -0.638 5.638 8 C 0.288 3.712 9 C -0.289 4.289 10 C 0.055 3.945 11 N -0.345 5.345 12 C 0.260 3.740 13 C -0.622 4.622 14 H 0.045 0.955 15 C -0.019 4.019 16 N -0.923 5.923 17 Si 1.120 2.880 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.275 1.275 21 N -0.348 5.348 22 C -0.136 4.136 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.414 0.586 30 H 0.420 0.580 31 H 0.168 0.832 32 H 0.201 0.799 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -3.925 25.192 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C 0.013 3.987 4 N -0.349 5.349 5 C 0.414 3.586 6 O -0.468 6.468 7 N -0.290 5.290 8 C 0.032 3.968 9 C -0.320 4.320 10 C -0.093 4.093 11 N -0.127 5.127 12 C 0.141 3.859 13 C -0.660 4.660 14 H 0.063 0.937 15 C -0.219 4.219 16 N -0.560 5.560 17 Si 0.941 3.059 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.200 1.200 21 N -0.179 5.179 22 C -0.174 4.174 23 C -0.224 4.224 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.251 0.749 30 H 0.257 0.743 31 H 0.186 0.814 32 H 0.218 0.782 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.873 -3.525 23.273 23.555 hybrid contribution 1.402 0.001 1.077 1.768 sum 2.275 -3.524 24.350 24.709 Atomic orbital electron populations 1.21628 0.94788 1.02005 1.01468 1.21260 0.96596 0.92764 1.02592 1.20637 0.98632 0.91744 0.87657 1.44206 1.54958 1.33602 1.02097 1.15784 0.80572 0.81372 0.80905 1.90825 1.38514 1.34473 1.83027 1.41427 1.48224 1.38710 1.00660 1.19089 0.96752 0.96117 0.84834 1.21701 1.09849 1.06855 0.93641 1.23160 0.96402 0.93562 0.96199 1.48545 1.32542 1.25677 1.05891 1.19411 0.98055 0.95582 0.72888 1.22301 0.92035 1.51636 1.00052 0.93652 1.27294 1.10936 0.91923 0.91706 1.70944 1.04183 1.45176 1.35650 0.82877 0.68792 0.77741 0.76501 1.19948 1.19646 1.20018 1.77256 1.24452 1.24838 0.91345 1.23500 0.99271 1.02385 0.92206 1.23383 0.91530 1.03867 1.03659 0.90804 0.94928 0.92276 0.93551 0.88699 0.74898 0.74331 0.81441 0.78229 0.92862 0.96595 0.92967 0.86959 0.85388 0.87576 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.70 71.98 0.70 -1.57 16 2 C -0.09 -1.65 5.75 30.60 0.18 -1.47 16 3 C 0.10 1.68 1.68 3.60 0.01 1.69 16 4 N -0.69 -13.29 5.02 -437.99 -2.20 -15.49 16 5 C 0.71 20.71 8.39 179.06 1.50 22.21 16 6 O -0.59 -21.21 12.61 -4.02 -0.05 -21.26 16 7 N -0.64 -19.87 5.45 -321.23 -1.75 -21.62 16 8 C 0.29 11.85 8.11 133.32 1.08 12.93 16 9 C -0.29 -11.72 9.61 22.11 0.21 -11.51 16 10 C 0.05 2.23 11.44 83.52 0.96 3.18 16 11 N -0.34 -16.60 3.67 -351.84 -1.29 -17.89 16 12 C 0.26 13.61 5.57 85.63 0.48 14.09 16 13 C -0.62 -35.89 9.24 25.60 0.24 -35.65 16 14 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 15 C -0.02 -1.07 5.46 84.66 0.46 -0.61 16 16 N -0.92 -54.47 13.65 21.45 0.29 -54.18 16 17 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 N -0.35 -16.61 12.42 -54.43 -0.68 -17.29 16 22 C -0.14 -1.32 10.15 30.62 0.31 -1.01 16 23 C -0.19 -2.96 10.18 30.62 0.31 -2.65 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.03 0.66 7.97 -2.39 -0.02 0.64 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.15 7.34 -2.39 -0.02 1.13 16 28 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.41 5.30 8.85 -92.71 -0.82 4.48 16 30 H 0.42 10.44 8.84 -92.70 -0.82 9.62 16 31 H 0.17 6.64 5.91 -2.91 -0.02 6.62 16 32 H 0.20 6.43 8.06 -2.91 -0.02 6.40 16 33 H 0.05 2.67 7.94 -2.39 -0.02 2.66 16 34 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 35 H 0.26 15.22 7.22 -92.71 -0.67 14.55 16 36 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -74.13 334.21 2.34 -71.79 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.46 Total: 24.21 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.43 Total: -0.36 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.63 Total: -126.47 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -74.13 2.34 -71.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296765344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.197 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds