Wall clock time and date at job start Tue Mar 31 2020 00:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47257 * 2 1 4 4 N 1.32201 * 120.34986 * 89.01165 * 3 2 1 5 5 N 1.28739 * 120.47544 * 179.72567 * 4 3 2 6 6 C 1.32726 * 121.25092 * 359.97438 * 5 4 3 7 7 N 1.38424 * 119.66198 * 180.02562 * 6 5 4 8 8 C 1.47479 * 110.99615 * 95.97538 * 7 6 5 9 9 C 1.53520 * 87.92846 * 221.29766 * 8 7 6 10 10 O 1.42903 * 114.16505 * 272.37586 * 9 8 7 11 11 C 1.50697 * 114.16946 * 139.67478 * 9 8 7 12 12 H 1.08001 * 119.99949 * 266.15519 * 11 9 8 13 13 C 1.37879 * 120.00396 * 86.15794 * 11 9 8 14 14 N 1.31512 * 119.99507 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00037 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46892 * 60.00126 * 15 13 11 17 17 H 1.48497 * 109.47121 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47344 * 300.00064 * 15 13 11 19 19 C 1.47474 * 110.99685 * 0.02562 * 7 6 5 20 20 N 1.32700 * 120.67629 * 0.02562 * 6 5 4 21 21 C 1.32415 * 119.46791 * 359.97438 * 20 6 5 22 22 C 1.50696 * 120.58317 * 180.02562 * 21 20 6 23 23 C 1.53007 * 109.46737 * 88.51293 * 22 21 20 24 24 H 1.09000 * 109.47122 * 175.39254 * 1 2 3 25 25 H 1.09001 * 109.47186 * 295.40250 * 1 2 3 26 26 H 1.09001 * 109.46783 * 55.39999 * 1 2 3 27 27 H 1.09000 * 109.47179 * 239.99747 * 2 1 3 28 28 H 1.09003 * 109.46436 * 120.00369 * 2 1 3 29 29 H 1.09005 * 113.47804 * 336.05792 * 8 7 6 30 30 H 1.08996 * 113.48062 * 106.53054 * 8 7 6 31 31 H 0.96702 * 114.00053 * 273.83647 * 10 9 8 32 32 H 0.97002 * 119.99350 * 179.97438 * 14 13 11 33 33 H 1.09002 * 113.47419 * 253.46262 * 19 7 6 34 34 H 1.08997 * 113.47974 * 23.93538 * 19 7 6 35 35 H 1.09007 * 109.47267 * 208.50903 * 22 21 20 36 36 H 1.08991 * 109.48030 * 328.51472 * 22 21 20 37 37 H 1.09003 * 109.47258 * 63.94139 * 23 22 21 38 38 H 1.08998 * 109.47098 * 183.93638 * 23 22 21 39 39 H 1.08999 * 109.47071 * 303.93802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2365 2.0571 1.1407 5 7 2.6706 3.2691 1.1436 6 6 2.9252 3.9121 0.0107 7 7 3.3915 5.2147 0.0522 8 6 4.8624 5.2529 -0.0479 9 6 4.8520 6.3446 1.0314 10 8 4.7074 7.6712 0.5202 11 6 5.9528 6.2136 2.0522 12 1 5.7710 5.6879 2.9779 13 6 7.1921 6.7648 1.8043 14 7 7.4135 7.4045 0.6768 15 14 8.5563 6.6030 3.0701 16 1 8.8439 5.1654 3.3068 17 1 9.7803 7.2769 2.5674 18 1 8.1290 7.2383 4.3425 19 6 3.5304 5.6822 1.4440 20 7 2.7372 3.3189 -1.1614 21 6 2.2915 2.0725 -1.1966 22 6 2.0696 1.3745 -2.5136 23 6 3.3632 0.6828 -2.9484 24 1 -0.3633 -1.0243 -0.0826 25 1 -0.3633 0.4408 0.9283 26 1 -0.3633 0.5836 -0.8459 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.3437 4.3291 0.2735 30 1 5.2229 5.6022 -1.0154 31 1 5.5416 8.0860 0.2611 32 1 8.2853 7.7926 0.5026 33 1 2.7617 6.3955 1.7412 34 1 3.6563 4.8730 2.1634 35 1 1.2798 0.6314 -2.4025 36 1 1.7773 2.1053 -3.2676 37 1 3.6178 -0.0964 -2.2299 38 1 3.2236 0.2371 -3.9333 39 1 4.1697 1.4147 -2.9918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302835470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:03 Heat of formation + Delta-G solvation = 63.303216 kcal Electronic energy + Delta-G solvation = -21942.459168 eV Core-core repulsion = 18694.452700 eV Total energy + Delta-G solvation = -3248.006468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87660 -39.45337 -36.08192 -35.25234 -34.10002 -32.27805 -32.13764 -30.38894 -27.84470 -26.16046 -25.51028 -24.85545 -23.85986 -22.28266 -21.39185 -19.18342 -18.51380 -17.75154 -16.21525 -15.96054 -15.49758 -15.12626 -14.72448 -14.65961 -14.40421 -13.89002 -13.80174 -13.16627 -13.02676 -12.84893 -12.50303 -12.15040 -12.04996 -11.94208 -11.66356 -11.53388 -11.39720 -11.36342 -11.16525 -10.99856 -10.90367 -10.85443 -10.48000 -10.22032 -9.88505 -9.47350 -9.04835 -8.72885 -8.40202 -8.09524 -6.35497 -4.45160 0.70720 0.94018 3.19328 3.24387 3.27362 3.46866 3.59802 3.84951 4.10593 4.21284 4.48509 4.70617 4.81448 4.88459 4.95592 4.99451 5.08423 5.17711 5.28174 5.42521 5.57594 5.60100 5.67935 5.74972 5.84829 5.87956 5.93581 5.97877 6.03377 6.15775 6.21303 6.58647 6.70111 6.80762 7.06603 7.23339 7.68163 7.75275 7.87140 8.58224 8.71882 9.25293 9.56455 10.71286 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.004404 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.888691 B = 6356.888150 C = 6454.636995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.017 4.017 4 N -0.173 5.173 5 N -0.309 5.309 6 C 0.415 3.585 7 N -0.411 5.411 8 C 0.005 3.995 9 C 0.253 3.747 10 O -0.566 6.566 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.908 3.092 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.016 3.984 20 N -0.467 5.467 21 C 0.172 3.828 22 C -0.077 4.077 23 C -0.146 4.146 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.393 0.607 32 H 0.274 0.726 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -14.407 -5.529 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.168 4.168 4 N -0.023 5.023 5 N -0.161 5.161 6 C 0.059 3.941 7 N -0.133 5.133 8 C -0.121 4.121 9 C 0.211 3.789 10 O -0.379 6.379 11 C -0.572 4.572 12 H 0.090 0.910 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.112 4.112 20 N -0.189 5.189 21 C 0.012 3.988 22 C -0.115 4.115 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.311 -13.417 -5.075 17.101 hybrid contribution 1.493 -0.759 0.090 1.677 sum -7.818 -14.176 -4.984 16.938 Atomic orbital electron populations 1.21750 0.93936 1.02229 1.02590 1.20354 0.96564 0.89094 1.04118 1.23245 1.01762 0.99990 0.91800 1.73457 1.03305 1.01068 1.24433 1.73967 1.14084 1.02236 1.25813 1.23831 0.91417 0.93252 0.85630 1.66089 1.15972 1.07599 1.23607 1.24905 0.80972 1.02155 1.04115 1.19351 0.90302 0.80661 0.88622 1.86056 1.38755 1.28134 1.84955 1.21480 0.95352 1.36253 1.04145 0.91007 1.25085 0.98740 0.93680 0.95537 1.69276 1.24571 1.36273 1.23662 0.86381 0.80261 0.78584 0.81276 1.19970 1.20923 1.19691 1.24289 1.00008 0.99170 0.87750 1.68594 1.12689 1.09040 1.28622 1.22426 0.89551 0.89963 0.96849 1.20631 0.99737 0.99457 0.91712 1.21724 0.96521 1.00611 1.01571 0.91509 0.92064 0.92617 0.89584 0.89478 0.91681 0.89826 0.75108 0.91556 0.89985 0.88092 0.88983 0.88965 0.92317 0.91162 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.76 37.16 0.36 -0.84 16 2 C -0.06 -0.59 5.59 -27.88 -0.16 -0.74 16 3 C -0.02 -0.25 6.12 -82.26 -0.50 -0.76 16 4 N -0.17 -3.13 11.56 33.65 0.39 -2.74 16 5 N -0.31 -6.43 9.39 29.84 0.28 -6.15 16 6 C 0.41 8.86 6.85 -322.21 -2.21 6.65 16 7 N -0.41 -9.51 6.51 -184.90 -1.20 -10.72 16 8 C 0.01 0.12 7.08 -7.59 -0.05 0.07 16 9 C 0.25 6.49 1.57 -91.26 -0.14 6.34 16 10 O -0.57 -15.25 13.54 -35.23 -0.48 -15.72 16 11 C -0.53 -14.21 8.68 -34.44 -0.30 -14.51 16 12 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 13 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 14 N -0.90 -23.67 11.02 55.43 0.61 -23.06 16 15 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.02 0.37 6.79 -7.62 -0.05 0.32 16 20 N -0.47 -8.93 10.51 -10.00 -0.11 -9.03 16 21 C 0.17 2.55 6.08 -82.17 -0.50 2.05 16 22 C -0.08 -0.76 5.60 -27.88 -0.16 -0.92 16 23 C -0.15 -1.30 9.82 37.16 0.36 -0.94 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.45 7.70 -51.93 -0.40 0.05 16 27 H 0.09 0.61 6.05 -51.93 -0.31 0.30 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.58 7.85 -51.93 -0.41 1.17 16 30 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 31 H 0.39 10.63 6.34 45.56 0.29 10.92 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.10 2.32 6.60 -51.93 -0.34 1.98 16 35 H 0.09 0.65 6.15 -51.93 -0.32 0.33 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.48 7.55 -51.93 -0.39 0.09 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -29.85 322.22 -8.92 -38.78 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.81 Total: 10.08 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.44 Total: -1.49 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.03 Total: -51.70 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.48 Total: -15.72 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.85 -8.92 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302835470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.079 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds