Wall clock time and date at job start Tue Mar 31 2020 00:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47257 * 2 1 4 4 N 1.32201 * 120.34986 * 89.01165 * 3 2 1 5 5 N 1.28739 * 120.47544 * 179.72567 * 4 3 2 6 6 C 1.32726 * 121.25092 * 359.97438 * 5 4 3 7 7 N 1.38424 * 119.66198 * 180.02562 * 6 5 4 8 8 C 1.47479 * 110.99615 * 95.97538 * 7 6 5 9 9 C 1.53520 * 87.92846 * 221.29766 * 8 7 6 10 10 O 1.42903 * 114.16505 * 272.37586 * 9 8 7 11 11 C 1.50697 * 114.16946 * 139.67478 * 9 8 7 12 12 H 1.08001 * 119.99949 * 266.15519 * 11 9 8 13 13 C 1.37879 * 120.00396 * 86.15794 * 11 9 8 14 14 N 1.31512 * 119.99507 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00037 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46892 * 60.00126 * 15 13 11 17 17 H 1.48497 * 109.47121 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47344 * 300.00064 * 15 13 11 19 19 C 1.47474 * 110.99685 * 0.02562 * 7 6 5 20 20 N 1.32700 * 120.67629 * 0.02562 * 6 5 4 21 21 C 1.32415 * 119.46791 * 359.97438 * 20 6 5 22 22 C 1.50696 * 120.58317 * 180.02562 * 21 20 6 23 23 C 1.53007 * 109.46737 * 88.51293 * 22 21 20 24 24 H 1.09000 * 109.47122 * 175.39254 * 1 2 3 25 25 H 1.09001 * 109.47186 * 295.40250 * 1 2 3 26 26 H 1.09001 * 109.46783 * 55.39999 * 1 2 3 27 27 H 1.09000 * 109.47179 * 239.99747 * 2 1 3 28 28 H 1.09003 * 109.46436 * 120.00369 * 2 1 3 29 29 H 1.09005 * 113.47804 * 336.05792 * 8 7 6 30 30 H 1.08996 * 113.48062 * 106.53054 * 8 7 6 31 31 H 0.96702 * 114.00053 * 273.83647 * 10 9 8 32 32 H 0.97002 * 119.99350 * 179.97438 * 14 13 11 33 33 H 1.09002 * 113.47419 * 253.46262 * 19 7 6 34 34 H 1.08997 * 113.47974 * 23.93538 * 19 7 6 35 35 H 1.09007 * 109.47267 * 208.50903 * 22 21 20 36 36 H 1.08991 * 109.48030 * 328.51472 * 22 21 20 37 37 H 1.09003 * 109.47258 * 63.94139 * 23 22 21 38 38 H 1.08998 * 109.47098 * 183.93638 * 23 22 21 39 39 H 1.08999 * 109.47071 * 303.93802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2365 2.0571 1.1407 5 7 2.6706 3.2691 1.1436 6 6 2.9252 3.9121 0.0107 7 7 3.3915 5.2147 0.0522 8 6 4.8624 5.2529 -0.0479 9 6 4.8520 6.3446 1.0314 10 8 4.7074 7.6712 0.5202 11 6 5.9528 6.2136 2.0522 12 1 5.7710 5.6879 2.9779 13 6 7.1921 6.7648 1.8043 14 7 7.4135 7.4045 0.6768 15 14 8.5563 6.6030 3.0701 16 1 8.8439 5.1654 3.3068 17 1 9.7803 7.2769 2.5674 18 1 8.1290 7.2383 4.3425 19 6 3.5304 5.6822 1.4440 20 7 2.7372 3.3189 -1.1614 21 6 2.2915 2.0725 -1.1966 22 6 2.0696 1.3745 -2.5136 23 6 3.3632 0.6828 -2.9484 24 1 -0.3633 -1.0243 -0.0826 25 1 -0.3633 0.4408 0.9283 26 1 -0.3633 0.5836 -0.8459 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.3437 4.3291 0.2735 30 1 5.2229 5.6022 -1.0154 31 1 5.5416 8.0860 0.2611 32 1 8.2853 7.7926 0.5026 33 1 2.7617 6.3955 1.7412 34 1 3.6563 4.8730 2.1634 35 1 1.2798 0.6314 -2.4025 36 1 1.7773 2.1053 -3.2676 37 1 3.6178 -0.0964 -2.2299 38 1 3.2236 0.2371 -3.9333 39 1 4.1697 1.4147 -2.9918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302835470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:03 Heat of formation + Delta-G solvation = 41.394363 kcal Electronic energy + Delta-G solvation = -21943.409207 eV Core-core repulsion = 18694.452700 eV Total energy + Delta-G solvation = -3248.956507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.30255 -41.19487 -37.32363 -36.77414 -35.66467 -34.18827 -33.20216 -31.70531 -29.53924 -27.57382 -27.14323 -26.47024 -25.18564 -23.20274 -22.67381 -20.89813 -20.06630 -19.66626 -17.94314 -17.40836 -17.10449 -16.65938 -16.27123 -15.83820 -15.55636 -15.47674 -14.89063 -14.59444 -14.30719 -14.05626 -13.86867 -13.66929 -13.46757 -13.27446 -13.08130 -12.92822 -12.80668 -12.59528 -12.45001 -12.29291 -12.26994 -12.17613 -12.03526 -11.87954 -11.55552 -11.13641 -10.74448 -10.50941 -10.27076 -9.84982 -8.33647 -6.51730 -0.62353 -0.42301 1.42266 1.43734 1.52496 2.00164 2.22035 2.35310 2.52258 2.88558 2.94799 3.27772 3.52607 3.60237 3.84462 3.96103 4.10423 4.18172 4.24148 4.29283 4.34433 4.36021 4.45354 4.67166 4.72559 4.76904 4.84723 4.93449 4.99184 5.02040 5.03710 5.15178 5.21570 5.28276 5.39922 5.57480 5.65799 5.84420 6.12864 6.53701 7.21564 7.31100 7.44698 8.72936 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.004404 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.888691 B = 6356.888150 C = 6454.636995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C 0.003 3.997 4 N -0.204 5.204 5 N -0.337 5.337 6 C 0.391 3.609 7 N -0.418 5.418 8 C 0.020 3.980 9 C 0.235 3.765 10 O -0.576 6.576 11 C -0.561 4.561 12 H 0.068 0.932 13 C 0.032 3.968 14 N -0.916 5.916 15 Si 0.973 3.027 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.268 1.268 19 C 0.028 3.972 20 N -0.491 5.491 21 C 0.175 3.825 22 C -0.074 4.074 23 C -0.144 4.144 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.388 0.612 32 H 0.279 0.721 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -17.382 -6.395 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.149 4.149 4 N -0.050 5.050 5 N -0.187 5.187 6 C 0.033 3.967 7 N -0.140 5.140 8 C -0.108 4.108 9 C 0.193 3.807 10 O -0.389 6.389 11 C -0.598 4.598 12 H 0.087 0.913 13 C -0.169 4.169 14 N -0.556 5.556 15 Si 0.797 3.203 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.193 1.193 19 C -0.101 4.101 20 N -0.214 5.214 21 C 0.015 3.985 22 C -0.113 4.113 23 C -0.202 4.202 24 H 0.117 0.883 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.141 0.859 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.244 0.756 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.151 0.849 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.992 -16.402 -5.912 20.095 hybrid contribution 1.582 -0.043 0.247 1.602 sum -8.409 -16.445 -5.665 19.319 Atomic orbital electron populations 1.21766 0.92408 1.04256 1.01819 1.20679 0.97599 0.85602 1.06242 1.24187 0.98392 1.01762 0.90578 1.73393 1.04895 1.00350 1.26391 1.73860 1.15237 1.03667 1.25911 1.23593 0.93256 0.93003 0.86813 1.65983 1.15066 1.09883 1.23089 1.24539 0.82416 1.01100 1.02714 1.19570 0.91481 0.80338 0.89264 1.86035 1.38592 1.29063 1.85161 1.21679 0.96368 1.37280 1.04504 0.91338 1.25835 1.00638 0.93078 0.97321 1.69342 1.25230 1.36267 1.24767 0.85385 0.77530 0.78553 0.78870 1.19711 1.20023 1.19338 1.24088 0.98837 0.98803 0.88335 1.68605 1.13810 1.11164 1.27777 1.23434 0.87125 0.88559 0.99355 1.20929 1.01535 1.00039 0.88760 1.21754 0.94708 1.00024 1.03714 0.88253 0.94026 0.92143 0.85898 0.88956 0.92627 0.91084 0.75598 0.91132 0.90011 0.88210 0.84865 0.88824 0.91144 0.88039 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.76 71.98 0.70 -1.07 16 2 C -0.06 -0.93 5.59 29.85 0.17 -0.76 16 3 C 0.00 0.09 6.12 42.61 0.26 0.35 16 4 N -0.20 -7.34 11.56 -47.44 -0.55 -7.89 16 5 N -0.34 -14.43 9.39 -59.51 -0.56 -14.99 16 6 C 0.39 17.19 6.85 261.28 1.79 18.98 16 7 N -0.42 -20.18 6.51 -739.30 -4.82 -25.00 16 8 C 0.02 1.01 7.08 83.54 0.59 1.60 16 9 C 0.24 12.56 1.57 -11.21 -0.02 12.54 16 10 O -0.58 -32.23 13.54 -148.98 -2.02 -34.25 16 11 C -0.56 -30.69 8.68 25.60 0.22 -30.47 16 12 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 13 C 0.03 1.68 5.40 84.66 0.46 2.14 16 14 N -0.92 -49.09 11.02 21.45 0.24 -48.86 16 15 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C 0.03 1.35 6.79 83.53 0.57 1.92 16 20 N -0.49 -18.87 10.51 -185.57 -1.95 -20.82 16 21 C 0.18 4.90 6.08 42.58 0.26 5.16 16 22 C -0.07 -1.21 5.60 29.85 0.17 -1.04 16 23 C -0.14 -2.05 9.82 71.98 0.71 -1.34 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.70 7.70 -2.39 -0.02 0.68 16 27 H 0.12 1.00 6.05 -2.39 -0.01 0.99 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.84 7.85 -2.38 -0.02 2.82 16 30 H 0.07 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.39 21.87 6.34 -74.06 -0.47 21.40 16 32 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.08 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.10 4.83 6.60 -2.39 -0.02 4.82 16 35 H 0.13 1.10 6.15 -2.38 -0.01 1.09 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 0.84 7.55 -2.39 -0.02 0.83 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -68.16 322.22 -1.15 -69.31 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.60 Total: 30.80 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.87 Total: 8.00 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -7.64 Total: -117.55 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.02 Total: -34.25 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.16 -1.15 -69.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302835470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.702 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds