Wall clock time and date at job start Tue Mar 31 2020 00:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46968 * 2 1 4 4 C 1.53003 * 109.47111 * 239.99678 * 2 1 3 5 5 N 1.46506 * 109.47037 * 119.99561 * 2 1 3 6 6 C 1.34846 * 126.58823 * 75.00054 * 5 2 1 7 7 C 1.36665 * 106.82361 * 179.97438 * 6 5 2 8 8 C 1.47445 * 125.78007 * 179.73324 * 7 6 5 9 9 O 1.21623 * 119.99652 * 354.36433 * 8 7 6 10 10 N 1.34766 * 120.00058 * 174.35648 * 8 7 6 11 11 C 1.36964 * 120.00114 * 185.14793 * 10 8 7 12 12 H 1.08002 * 119.99714 * 225.13148 * 11 10 8 13 13 C 1.38990 * 119.99613 * 45.12919 * 11 10 8 14 14 N 1.31401 * 119.99833 * 6.56680 * 13 11 10 15 15 Si 1.86802 * 119.99689 * 186.56801 * 13 11 10 16 16 H 1.48496 * 109.47024 * 60.00046 * 15 13 11 17 17 H 1.48499 * 109.46862 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47188 * 300.00089 * 15 13 11 19 19 C 1.46510 * 120.00251 * 5.15409 * 10 8 7 20 20 C 1.52999 * 117.49925 * 182.39906 * 19 10 8 21 21 C 1.53001 * 117.50075 * 113.73957 * 19 10 8 22 22 N 1.34425 * 108.44574 * 0.02562 * 7 6 5 23 23 N 1.28757 * 109.52596 * 0.02562 * 22 7 6 24 24 H 1.09006 * 109.47346 * 299.99725 * 1 2 3 25 25 H 1.08993 * 109.47233 * 60.00170 * 1 2 3 26 26 H 1.09007 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46698 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46956 * 299.99423 * 3 2 1 29 29 H 1.09000 * 109.47511 * 60.00187 * 3 2 1 30 30 H 1.08997 * 109.47030 * 300.00182 * 4 2 1 31 31 H 1.08993 * 109.46948 * 59.99977 * 4 2 1 32 32 H 1.08997 * 109.47012 * 180.02562 * 4 2 1 33 33 H 1.07996 * 126.58686 * 359.96425 * 6 5 2 34 34 H 0.97004 * 119.99638 * 184.99731 * 14 13 11 35 35 H 1.09001 * 115.54464 * 328.06664 * 19 10 8 36 36 H 1.09007 * 117.49914 * 359.97438 * 20 19 10 37 37 H 1.08999 * 117.49693 * 145.01428 * 20 19 10 38 38 H 1.08995 * 117.49612 * 214.98162 * 21 19 10 39 39 H 1.09001 * 117.49878 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.0220 -2.0219 1.4106 7 6 2.5640 -2.2216 2.6492 8 6 2.7608 -3.5281 3.3036 9 8 2.3363 -4.5405 2.7801 10 7 3.4113 -3.6005 4.4817 11 6 3.6870 -4.8214 5.0379 12 1 3.5069 -4.9887 6.0896 13 6 4.1984 -5.8449 4.2488 14 7 4.5384 -5.6061 3.0022 15 14 4.4022 -7.5600 4.9605 16 1 3.0803 -8.0732 5.4015 17 1 4.9622 -8.4630 3.9231 18 1 5.3254 -7.5073 6.1225 19 6 3.8234 -2.3732 5.1676 20 6 4.6072 -2.5227 6.4731 21 6 3.1513 -2.0509 6.5038 22 7 2.8814 -1.0248 3.1726 23 7 2.5708 -0.0943 2.3386 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2076 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6651 -2.7838 0.7336 34 1 4.8267 -6.3345 2.4301 35 1 4.0810 -1.5360 4.5189 36 1 4.8160 -3.5341 6.8218 37 1 5.3803 -1.7836 6.6833 38 1 2.9671 -1.0017 6.7343 39 1 2.4023 -2.7518 6.8724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331556934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:13 Heat of formation + Delta-G solvation = 109.416794 kcal Electronic energy + Delta-G solvation = -22329.328947 eV Core-core repulsion = 19083.322113 eV Total energy + Delta-G solvation = -3246.006833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61035 -38.27402 -37.13248 -35.80196 -32.74763 -31.63017 -30.83352 -29.83423 -27.69021 -27.61344 -25.27000 -23.24399 -22.43062 -21.43219 -20.73852 -19.93220 -19.19292 -17.09089 -15.98106 -15.87660 -15.54810 -14.74321 -14.50324 -14.26337 -14.02465 -13.93284 -13.59722 -12.97741 -12.79987 -12.69009 -12.52118 -12.39391 -12.09330 -11.98948 -11.55357 -11.52740 -11.19835 -10.95317 -10.87863 -10.74272 -10.56172 -10.51110 -10.11788 -9.84715 -9.71822 -9.22001 -8.70212 -8.44473 -8.10788 -6.93212 -6.00304 -3.84908 1.76639 2.42780 2.71531 3.35219 3.39028 3.41041 4.21454 4.32769 4.49266 4.59680 4.66354 4.88618 4.93472 5.06421 5.21680 5.23559 5.37099 5.41054 5.43111 5.46745 5.53760 5.62108 5.69340 5.80056 5.83078 5.92976 5.98768 6.06407 6.10944 6.31434 6.46847 6.51299 6.74057 6.95275 7.08010 7.27855 7.65802 8.32404 8.63901 9.12404 9.23952 9.69412 10.36923 11.03641 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.005529 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.023299 B = 5062.754812 C = 5910.689429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.173 3.827 3 C -0.146 4.146 4 C -0.162 4.162 5 N -0.359 5.359 6 C 0.065 3.935 7 C -0.055 4.055 8 C 0.556 3.444 9 O -0.529 6.529 10 N -0.413 5.413 11 C -0.330 4.330 12 H 0.080 0.920 13 C 0.059 3.941 14 N -0.832 5.832 15 Si 0.915 3.085 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.076 3.924 20 C -0.183 4.183 21 C -0.203 4.203 22 N -0.215 5.215 23 N -0.092 5.092 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.192 0.808 34 H 0.264 0.736 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 11.782 -7.288 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 C -0.203 4.203 4 C -0.220 4.220 5 N -0.148 5.148 6 C -0.090 4.090 7 C -0.195 4.195 8 C 0.342 3.658 9 O -0.406 6.406 10 N -0.132 5.132 11 C -0.458 4.458 12 H 0.097 0.903 13 C -0.151 4.151 14 N -0.466 5.466 15 Si 0.742 3.258 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.030 4.030 20 C -0.221 4.221 21 C -0.242 4.242 22 N -0.088 5.088 23 N -0.070 5.070 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.928 12.502 -7.091 15.195 hybrid contribution -0.143 -1.727 -0.312 1.761 sum -5.072 10.775 -7.403 14.022 Atomic orbital electron populations 1.22265 0.92518 1.03560 1.03449 1.20880 0.94780 0.93836 0.81553 1.21949 1.02462 0.92657 1.03257 1.22271 1.02691 1.01353 0.95694 1.50589 1.43683 1.05375 1.15183 1.23107 1.01063 0.86132 0.98694 1.22347 1.07825 0.94564 0.94739 1.16438 0.81719 0.84175 0.83495 1.90609 1.51158 1.34646 1.64206 1.42514 1.48345 1.03702 1.18686 1.18924 1.43261 0.88198 0.95374 0.90260 1.25326 0.94322 0.99849 0.95566 1.69851 1.38377 1.32385 1.05968 0.86221 0.78431 0.82796 0.78316 1.20045 1.21136 1.20154 1.22367 1.00952 0.91531 0.88158 1.23105 0.93475 1.02501 1.03022 1.23200 0.95930 1.00358 1.04741 1.74642 1.13664 0.98678 1.21779 1.81784 1.16765 1.18288 0.90176 0.91425 0.90202 0.91417 0.91377 0.90708 0.90805 0.91127 0.89980 0.91233 0.79154 0.92525 0.84617 0.87910 0.89962 0.89878 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.74 37.16 0.32 -1.11 16 2 C 0.17 1.86 1.25 -131.82 -0.16 1.70 16 3 C -0.15 -1.37 8.11 37.16 0.30 -1.07 16 4 C -0.16 -1.47 8.30 37.16 0.31 -1.16 16 5 N -0.36 -5.65 3.44 -48.33 -0.17 -5.82 16 6 C 0.07 1.20 10.44 -16.80 -0.18 1.02 16 7 C -0.06 -1.25 6.76 -83.55 -0.56 -1.81 16 8 C 0.56 15.13 6.76 -12.52 -0.08 15.05 16 9 O -0.53 -15.88 14.56 5.26 0.08 -15.80 16 10 N -0.41 -11.15 2.85 -108.92 -0.31 -11.46 16 11 C -0.33 -9.31 7.93 -14.98 -0.12 -9.42 16 12 H 0.08 2.15 7.21 -52.49 -0.38 1.77 16 13 C 0.06 1.69 4.75 -17.46 -0.08 1.60 16 14 N -0.83 -24.95 11.14 55.50 0.62 -24.33 16 15 Si 0.92 21.89 29.56 -169.99 -5.03 16.86 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.08 1.75 5.46 -67.92 -0.37 1.38 16 20 C -0.18 -3.71 9.80 -26.69 -0.26 -3.97 16 21 C -0.20 -4.04 10.37 -26.69 -0.28 -4.32 16 22 N -0.22 -4.58 8.73 32.84 0.29 -4.29 16 23 N -0.09 -1.70 12.91 60.35 0.78 -0.93 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 30 H 0.07 0.65 7.44 -51.93 -0.39 0.27 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.19 3.12 7.63 -52.49 -0.40 2.72 16 34 H 0.26 7.58 8.32 -40.82 -0.34 7.25 16 35 H 0.14 3.11 5.26 -51.93 -0.27 2.84 16 36 H 0.10 2.20 6.72 -51.92 -0.35 1.86 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -34.18 325.25 -5.57 -39.76 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.57 Total: 3.22 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.17 Total: -2.11 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 1.21 Total: -46.83 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.18 -5.57 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331556934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.175 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds