Wall clock time and date at job start Tue Mar 31 2020 00:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46968 * 2 1 4 4 C 1.53003 * 109.47111 * 239.99678 * 2 1 3 5 5 N 1.46506 * 109.47037 * 119.99561 * 2 1 3 6 6 C 1.34846 * 126.58823 * 75.00054 * 5 2 1 7 7 C 1.36665 * 106.82361 * 179.97438 * 6 5 2 8 8 C 1.47445 * 125.78007 * 179.73324 * 7 6 5 9 9 O 1.21623 * 119.99652 * 354.36433 * 8 7 6 10 10 N 1.34766 * 120.00058 * 174.35648 * 8 7 6 11 11 C 1.36964 * 120.00114 * 185.14793 * 10 8 7 12 12 H 1.08002 * 119.99714 * 225.13148 * 11 10 8 13 13 C 1.38990 * 119.99613 * 45.12919 * 11 10 8 14 14 N 1.31401 * 119.99833 * 6.56680 * 13 11 10 15 15 Si 1.86802 * 119.99689 * 186.56801 * 13 11 10 16 16 H 1.48496 * 109.47024 * 60.00046 * 15 13 11 17 17 H 1.48499 * 109.46862 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47188 * 300.00089 * 15 13 11 19 19 C 1.46510 * 120.00251 * 5.15409 * 10 8 7 20 20 C 1.52999 * 117.49925 * 182.39906 * 19 10 8 21 21 C 1.53001 * 117.50075 * 113.73957 * 19 10 8 22 22 N 1.34425 * 108.44574 * 0.02562 * 7 6 5 23 23 N 1.28757 * 109.52596 * 0.02562 * 22 7 6 24 24 H 1.09006 * 109.47346 * 299.99725 * 1 2 3 25 25 H 1.08993 * 109.47233 * 60.00170 * 1 2 3 26 26 H 1.09007 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46698 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46956 * 299.99423 * 3 2 1 29 29 H 1.09000 * 109.47511 * 60.00187 * 3 2 1 30 30 H 1.08997 * 109.47030 * 300.00182 * 4 2 1 31 31 H 1.08993 * 109.46948 * 59.99977 * 4 2 1 32 32 H 1.08997 * 109.47012 * 180.02562 * 4 2 1 33 33 H 1.07996 * 126.58686 * 359.96425 * 6 5 2 34 34 H 0.97004 * 119.99638 * 184.99731 * 14 13 11 35 35 H 1.09001 * 115.54464 * 328.06664 * 19 10 8 36 36 H 1.09007 * 117.49914 * 359.97438 * 20 19 10 37 37 H 1.08999 * 117.49693 * 145.01428 * 20 19 10 38 38 H 1.08995 * 117.49612 * 214.98162 * 21 19 10 39 39 H 1.09001 * 117.49878 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1963 6 6 2.0220 -2.0219 1.4106 7 6 2.5640 -2.2216 2.6492 8 6 2.7608 -3.5281 3.3036 9 8 2.3363 -4.5405 2.7801 10 7 3.4113 -3.6005 4.4817 11 6 3.6870 -4.8214 5.0379 12 1 3.5069 -4.9887 6.0896 13 6 4.1984 -5.8449 4.2488 14 7 4.5384 -5.6061 3.0022 15 14 4.4022 -7.5600 4.9605 16 1 3.0803 -8.0732 5.4015 17 1 4.9622 -8.4630 3.9231 18 1 5.3254 -7.5073 6.1225 19 6 3.8234 -2.3732 5.1676 20 6 4.6072 -2.5227 6.4731 21 6 3.1513 -2.0509 6.5038 22 7 2.8814 -1.0248 3.1726 23 7 2.5708 -0.0943 2.3386 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2076 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.6651 -2.7838 0.7336 34 1 4.8267 -6.3345 2.4301 35 1 4.0810 -1.5360 4.5189 36 1 4.8160 -3.5341 6.8218 37 1 5.3803 -1.7836 6.6833 38 1 2.9671 -1.0017 6.7343 39 1 2.4023 -2.7518 6.8724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331556934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:11 Heat of formation + Delta-G solvation = 86.914994 kcal Electronic energy + Delta-G solvation = -22330.304698 eV Core-core repulsion = 19083.322113 eV Total energy + Delta-G solvation = -3246.982585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.09304 -40.13658 -38.19609 -37.68219 -34.78709 -33.09708 -32.66865 -31.45928 -28.45849 -28.39312 -27.23543 -24.61830 -24.19929 -23.05558 -22.46651 -21.43310 -20.81882 -18.55539 -17.83946 -17.41480 -16.87947 -16.64821 -16.16298 -15.56279 -15.42612 -15.18323 -15.11559 -14.65791 -14.54097 -13.82190 -13.58383 -13.35252 -13.23575 -13.14862 -12.86775 -12.79137 -12.75693 -12.70464 -12.38938 -12.23467 -12.22167 -11.99719 -11.89504 -11.58802 -11.13797 -10.91536 -10.74319 -10.15480 -10.03933 -8.97022 -8.11784 -6.02550 0.31944 1.00941 1.20229 1.42068 1.48698 1.53304 2.34628 2.77955 3.03064 3.14994 3.38035 3.42822 3.52645 3.69395 3.80974 3.93689 4.16540 4.24461 4.31040 4.41349 4.57765 4.59078 4.63344 4.64477 4.69158 4.81302 4.81401 4.87373 4.89014 5.07223 5.11317 5.20687 5.29779 5.45059 5.47791 5.54827 5.71127 6.21300 6.99526 7.05864 7.25018 7.65084 8.33021 8.91677 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.005529 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.023299 B = 5062.754812 C = 5910.689429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.143 4.143 4 C -0.160 4.160 5 N -0.338 5.338 6 C 0.082 3.918 7 C -0.094 4.094 8 C 0.545 3.455 9 O -0.574 6.574 10 N -0.429 5.429 11 C -0.347 4.347 12 H 0.082 0.918 13 C 0.007 3.993 14 N -0.870 5.870 15 Si 0.982 3.018 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.257 1.257 19 C 0.044 3.956 20 C -0.171 4.171 21 C -0.181 4.181 22 N -0.229 5.229 23 N -0.091 5.091 24 H 0.056 0.944 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.055 0.945 33 H 0.209 0.791 34 H 0.261 0.739 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 13.363 -8.010 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 C -0.201 4.201 4 C -0.218 4.218 5 N -0.126 5.126 6 C -0.075 4.075 7 C -0.234 4.234 8 C 0.333 3.667 9 O -0.455 6.455 10 N -0.148 5.148 11 C -0.475 4.475 12 H 0.099 0.901 13 C -0.198 4.198 14 N -0.506 5.506 15 Si 0.806 3.194 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.182 1.182 19 C -0.062 4.062 20 C -0.209 4.209 21 C -0.219 4.219 22 N -0.101 5.101 23 N -0.070 5.070 24 H 0.075 0.925 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.226 0.774 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.528 14.145 -7.792 17.069 hybrid contribution -0.032 -2.034 -0.177 2.042 sum -5.561 12.111 -7.968 15.527 Atomic orbital electron populations 1.22293 0.90540 1.03732 1.04816 1.21587 0.96287 0.94478 0.80048 1.21995 1.01656 0.91695 1.04711 1.22326 1.01854 1.01565 0.96058 1.51029 1.41523 1.04512 1.15550 1.23244 0.99286 0.87560 0.97424 1.21904 1.11340 0.93540 0.96603 1.17002 0.80851 0.85366 0.83497 1.90542 1.52973 1.36588 1.65368 1.42750 1.48353 1.04577 1.19090 1.19223 1.43197 0.89413 0.95647 0.90050 1.26252 0.93916 1.03857 0.95823 1.69994 1.40008 1.33188 1.07370 0.85199 0.78477 0.77717 0.78034 1.20099 1.20965 1.18177 1.22519 1.04063 0.90409 0.89184 1.23165 0.94603 1.02646 1.00455 1.23190 0.95430 1.01728 1.01578 1.74571 1.14403 0.98328 1.22826 1.81663 1.16606 1.17864 0.90861 0.92517 0.86367 0.91883 0.92677 0.86774 0.91848 0.91418 0.86132 0.92609 0.77434 0.92977 0.84632 0.89420 0.86840 0.86935 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.74 71.98 0.63 -1.68 16 2 C 0.16 2.98 1.25 3.60 0.00 2.99 16 3 C -0.14 -2.29 8.11 71.98 0.58 -1.71 16 4 C -0.16 -2.44 8.30 71.98 0.60 -1.85 16 5 N -0.34 -10.29 3.44 -306.81 -1.06 -11.35 16 6 C 0.08 3.02 10.44 83.86 0.88 3.90 16 7 C -0.09 -4.38 6.76 40.81 0.28 -4.10 16 8 C 0.55 30.87 6.76 86.67 0.59 31.45 16 9 O -0.57 -36.00 14.56 -4.10 -0.06 -36.06 16 10 N -0.43 -23.87 2.85 -616.76 -1.76 -25.63 16 11 C -0.35 -20.11 7.93 84.07 0.67 -19.45 16 12 H 0.08 4.52 7.21 -2.91 -0.02 4.50 16 13 C 0.01 0.41 4.75 84.94 0.40 0.82 16 14 N -0.87 -54.07 11.14 21.67 0.24 -53.83 16 15 Si 0.98 45.83 29.56 68.60 2.03 47.86 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 C 0.04 2.03 5.46 44.99 0.25 2.27 16 20 C -0.17 -6.78 9.80 30.62 0.30 -6.48 16 21 C -0.18 -7.01 10.37 30.62 0.32 -6.69 16 22 N -0.23 -9.84 8.73 -50.00 -0.44 -10.28 16 23 N -0.09 -3.34 12.91 37.02 0.48 -2.86 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.16 8.06 -2.39 -0.02 1.15 16 30 H 0.07 1.10 7.44 -2.39 -0.02 1.08 16 31 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.21 6.80 7.63 -2.91 -0.02 6.78 16 34 H 0.26 15.52 8.32 -92.70 -0.77 14.75 16 35 H 0.14 6.30 5.26 -2.39 -0.01 6.28 16 36 H 0.09 3.75 6.72 -2.38 -0.02 3.73 16 37 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -78.00 325.25 5.97 -72.03 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.05 Total: 20.65 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.49 Total: -0.53 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -2.53 Total: -103.94 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.06 Total: -36.06 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -78.00 5.97 -72.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331556934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.947 kcal (2) G-P(sol) polarization free energy of solvation -78.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds