Wall clock time and date at job start Tue Mar 31 2020 00:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50701 * 109.47212 * 59.99871 * 4 2 1 6 6 H 1.07998 * 120.00129 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46938 * 59.99701 * 9 7 5 11 11 H 1.48494 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46872 * 299.99704 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 14 14 N 1.46499 * 109.47012 * 300.00256 * 13 2 1 15 15 C 1.38505 * 120.00171 * 180.02562 * 14 13 2 16 16 C 1.39602 * 120.04624 * 359.97438 * 15 14 13 17 17 C 1.38289 * 118.03107 * 179.97438 * 16 15 14 18 18 C 1.40073 * 117.99178 * 359.97438 * 17 16 15 19 19 C 1.47862 * 120.09754 * 179.97438 * 18 17 16 20 20 N 1.34768 * 120.00394 * 180.02562 * 19 18 17 21 21 O 1.21560 * 119.99570 * 359.97438 * 19 18 17 22 22 N 1.32752 * 119.80813 * 359.97438 * 18 17 16 23 23 N 1.28364 * 122.10477 * 359.73467 * 22 18 17 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47289 * 299.99953 * 4 2 1 32 32 H 0.96993 * 120.00442 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47375 * 59.99966 * 13 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 359.97438 * 14 13 2 36 36 H 1.08006 * 120.98450 * 359.95546 * 16 15 14 37 37 H 1.07996 * 121.00544 * 180.02562 * 17 16 15 38 38 H 0.97007 * 119.99520 * 359.97438 * 20 19 18 39 39 H 0.96997 * 120.00454 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8528 9 14 1.2471 0.3983 -5.2572 10 1 1.7420 1.7983 -5.2576 11 1 1.7422 -0.3016 -6.4697 12 1 -0.2380 0.3981 -5.2567 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8867 -0.5037 3.7033 16 6 2.6893 -1.6386 3.8325 17 6 2.9985 -2.0741 5.1081 18 6 2.4876 -1.3490 6.1922 19 6 2.7887 -1.7738 7.5762 20 7 2.2957 -1.0751 8.6179 21 8 3.4801 -2.7538 7.7743 22 7 1.7324 -0.2794 5.9736 23 7 1.4510 0.1264 4.7888 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.1301 -0.7207 -1.2495 31 1 1.6767 -1.7488 -1.2494 32 1 2.8608 -1.8826 -4.7337 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 0.9943 0.7581 2.3565 36 1 3.0575 -2.1612 2.9620 37 1 3.6159 -2.9464 5.2637 38 1 1.7437 -0.2932 8.4596 39 1 2.4929 -1.3539 9.5257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340934131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:49 Heat of formation + Delta-G solvation = 2.795216 kcal Electronic energy + Delta-G solvation = -20917.320801 eV Core-core repulsion = 17666.690509 eV Total energy + Delta-G solvation = -3250.630292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 7.74 seconds Orbital eigenvalues (eV) -41.17311 -39.28571 -38.05682 -35.14402 -33.87557 -33.11020 -32.48480 -30.53164 -27.22911 -26.75383 -26.64056 -24.76952 -24.10977 -22.73610 -21.29478 -18.98411 -18.24551 -17.77082 -17.31009 -16.61049 -16.36749 -15.66636 -14.88275 -14.76404 -14.76000 -14.52288 -14.12951 -14.02638 -13.41099 -13.18635 -12.87580 -12.69166 -12.16076 -11.94405 -11.49538 -11.10674 -10.95801 -10.83673 -10.68351 -10.58256 -10.40404 -10.37297 -10.35887 -9.98108 -9.93317 -9.79306 -9.35588 -9.08244 -8.45718 -8.10245 -6.10282 -4.11887 0.60725 0.77854 2.60095 2.90062 3.24765 3.26072 3.31816 3.33373 3.66039 4.10393 4.36910 4.49758 4.58317 4.72078 4.95910 5.17899 5.24872 5.35082 5.53352 5.60079 5.71317 5.83214 5.94005 5.97261 6.08433 6.21010 6.47755 6.50511 6.51615 6.80772 6.91721 6.93608 6.99125 7.09004 7.44566 7.48480 7.59604 7.87294 7.98079 8.28577 8.60759 8.92173 9.52091 11.01101 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.048132 B = 0.002962 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.597903 B = 9450.892767 C = 9836.127740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.130 4.130 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.688 5.688 15 C 0.365 3.635 16 C -0.189 4.189 17 C -0.023 4.023 18 C -0.060 4.060 19 C 0.594 3.406 20 N -0.839 5.839 21 O -0.544 6.544 22 N -0.164 5.164 23 N -0.312 5.312 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.411 0.589 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 1.756 17.844 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 C -0.187 4.187 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.317 5.317 15 C 0.123 3.877 16 C -0.223 4.223 17 C -0.051 4.051 18 C -0.211 4.211 19 C 0.377 3.623 20 N -0.402 5.402 21 O -0.420 6.420 22 N -0.013 5.013 23 N -0.169 5.169 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.242 0.758 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.487 2.104 18.031 18.214 hybrid contribution 0.137 -0.205 -1.370 1.392 sum -1.350 1.900 16.661 16.823 Atomic orbital electron populations 1.21785 0.94954 1.01314 1.00630 1.20898 0.95756 0.96012 0.94360 1.21782 1.00566 0.95703 1.00631 1.19097 0.96341 0.95203 0.89397 1.21115 1.31464 1.12219 0.90434 0.92248 1.24998 0.95203 0.95033 0.99129 1.69931 1.36779 1.22963 1.23722 0.86696 0.79205 0.79796 0.82548 1.20270 1.21342 1.20265 1.21963 0.98895 0.96265 0.82888 1.44919 1.53484 1.32010 1.01257 1.20268 0.89091 0.89797 0.88580 1.21883 1.02670 0.98499 0.99231 1.22093 0.94170 0.98092 0.90749 1.22149 1.05016 0.98725 0.95243 1.17475 0.78723 0.82189 0.83946 1.43621 1.54950 1.33025 1.08593 1.90831 1.38836 1.26809 1.85491 1.72819 1.05874 1.08661 1.13932 1.73129 1.23991 1.26682 0.93065 0.91180 0.93276 0.94999 0.94999 0.93276 0.91179 0.96284 0.96284 0.92882 0.91383 0.91391 0.75018 0.82680 0.82487 0.75842 0.76473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.18 0.54 -154.51 -0.08 -1.27 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -12.94 7.65 -34.44 -0.26 -13.20 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.12 1.74 3.80 -4.04 -0.02 1.72 16 14 N -0.69 -8.92 5.11 -60.32 -0.31 -9.23 16 15 C 0.37 4.86 7.74 -154.94 -1.20 3.67 16 16 C -0.19 -2.24 9.39 -39.05 -0.37 -2.61 16 17 C -0.02 -0.27 9.71 -38.87 -0.38 -0.64 16 18 C -0.06 -0.75 6.83 -82.84 -0.57 -1.31 16 19 C 0.59 6.99 8.08 -12.33 -0.10 6.89 16 20 N -0.84 -6.64 8.86 30.53 0.27 -6.37 16 21 O -0.54 -7.90 17.22 5.31 0.09 -7.81 16 22 N -0.16 -2.16 10.73 33.32 0.36 -1.81 16 23 N -0.31 -4.42 11.55 31.21 0.36 -4.06 16 24 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 34 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.41 5.23 6.29 -40.82 -0.26 4.97 16 36 H 0.16 1.59 6.81 -52.48 -0.36 1.23 16 37 H 0.16 1.59 7.71 -52.49 -0.40 1.18 16 38 H 0.41 2.76 8.17 -40.82 -0.33 2.43 16 39 H 0.40 2.34 8.93 -40.82 -0.36 1.97 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -29.90 324.26 -6.27 -36.18 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.07 Total: 5.48 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.58 Total: -8.21 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 1.42 Total: -46.02 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.90 -6.27 -36.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340934131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.973 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.74 seconds