Wall clock time and date at job start Tue Mar 31 2020 00:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50701 * 109.47212 * 59.99871 * 4 2 1 6 6 H 1.07998 * 120.00129 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99861 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46938 * 59.99701 * 9 7 5 11 11 H 1.48494 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46872 * 299.99704 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 14 14 N 1.46499 * 109.47012 * 300.00256 * 13 2 1 15 15 C 1.38505 * 120.00171 * 180.02562 * 14 13 2 16 16 C 1.39602 * 120.04624 * 359.97438 * 15 14 13 17 17 C 1.38289 * 118.03107 * 179.97438 * 16 15 14 18 18 C 1.40073 * 117.99178 * 359.97438 * 17 16 15 19 19 C 1.47862 * 120.09754 * 179.97438 * 18 17 16 20 20 N 1.34768 * 120.00394 * 180.02562 * 19 18 17 21 21 O 1.21560 * 119.99570 * 359.97438 * 19 18 17 22 22 N 1.32752 * 119.80813 * 359.97438 * 18 17 16 23 23 N 1.28364 * 122.10477 * 359.73467 * 22 18 17 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47289 * 299.99953 * 4 2 1 32 32 H 0.96993 * 120.00442 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47375 * 59.99966 * 13 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 359.97438 * 14 13 2 36 36 H 1.08006 * 120.98450 * 359.95546 * 16 15 14 37 37 H 1.07996 * 121.00544 * 180.02562 * 17 16 15 38 38 H 0.97007 * 119.99520 * 359.97438 * 20 19 18 39 39 H 0.96997 * 120.00454 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6265 -1.5512 -3.8528 9 14 1.2471 0.3983 -5.2572 10 1 1.7420 1.7983 -5.2576 11 1 1.7422 -0.3016 -6.4697 12 1 -0.2380 0.3981 -5.2567 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8867 -0.5037 3.7033 16 6 2.6893 -1.6386 3.8325 17 6 2.9985 -2.0741 5.1081 18 6 2.4876 -1.3490 6.1922 19 6 2.7887 -1.7738 7.5762 20 7 2.2957 -1.0751 8.6179 21 8 3.4801 -2.7538 7.7743 22 7 1.7324 -0.2794 5.9736 23 7 1.4510 0.1264 4.7888 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.1301 -0.7207 -1.2495 31 1 1.6767 -1.7488 -1.2494 32 1 2.8608 -1.8826 -4.7337 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 0.9943 0.7581 2.3565 36 1 3.0575 -2.1612 2.9620 37 1 3.6159 -2.9464 5.2637 38 1 1.7437 -0.2932 8.4596 39 1 2.4929 -1.3539 9.5257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340934131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:41 Heat of formation + Delta-G solvation = -18.478705 kcal Electronic energy + Delta-G solvation = -20918.243307 eV Core-core repulsion = 17666.690509 eV Total energy + Delta-G solvation = -3251.552798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 7.00 seconds Orbital eigenvalues (eV) -42.15010 -40.25072 -39.32021 -36.40388 -34.78134 -34.29637 -34.06682 -31.63599 -28.99973 -27.97427 -27.89573 -25.95153 -25.21586 -24.27593 -22.25819 -20.13604 -19.18141 -18.95866 -18.38393 -18.25205 -17.41854 -16.66151 -16.51176 -15.85229 -15.84528 -15.73927 -15.24900 -15.16844 -14.57973 -14.43762 -14.19147 -14.07876 -13.91250 -12.98149 -12.96070 -12.74130 -12.69110 -12.32079 -12.21723 -12.00766 -11.93438 -11.42192 -11.37269 -11.30327 -11.04003 -10.86966 -10.73856 -10.72601 -10.48803 -9.12626 -8.13796 -6.19709 -0.36166 -0.17191 1.43569 1.43689 1.50944 1.66221 1.85444 2.40460 2.45245 2.69108 3.19077 3.21600 3.55170 3.61090 3.85913 3.91295 4.06418 4.06870 4.23405 4.57513 4.67537 4.70991 4.71429 4.83057 4.95392 4.96775 5.12348 5.13949 5.42890 5.51671 5.52760 5.56656 5.78303 5.80879 5.84968 5.91954 6.31133 6.33948 6.43834 6.94989 7.20846 7.47733 7.61179 8.97911 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.048132 B = 0.002962 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.597903 B = 9450.892767 C = 9836.127740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.063 4.063 3 C -0.125 4.125 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.067 0.933 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.270 1.270 13 C 0.136 3.864 14 N -0.684 5.684 15 C 0.358 3.642 16 C -0.187 4.187 17 C -0.024 4.024 18 C -0.063 4.063 19 C 0.592 3.408 20 N -0.817 5.817 21 O -0.575 6.575 22 N -0.170 5.170 23 N -0.330 5.330 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.051 0.949 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.420 0.580 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 2.648 19.085 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.063 4.063 3 C -0.182 4.182 4 C 0.004 3.996 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.195 1.195 13 C 0.012 3.988 14 N -0.314 5.314 15 C 0.116 3.884 16 C -0.220 4.220 17 C -0.052 4.052 18 C -0.215 4.215 19 C 0.375 3.625 20 N -0.381 5.381 21 O -0.454 6.454 22 N -0.017 5.017 23 N -0.186 5.186 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.188 0.812 37 H 0.189 0.811 38 H 0.251 0.749 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.155 3.047 19.318 19.675 hybrid contribution 0.333 -0.480 -1.655 1.755 sum -1.822 2.566 17.664 17.942 Atomic orbital electron populations 1.21718 0.94171 1.01155 1.01168 1.20673 0.96277 0.96108 0.93251 1.21715 1.00216 0.95112 1.01169 1.18959 0.94735 0.94372 0.91533 1.21566 1.30383 1.12039 0.91368 0.91540 1.25814 0.95733 0.95830 1.02311 1.70063 1.38645 1.24728 1.24105 0.85730 0.78903 0.78830 0.78965 1.19483 1.21680 1.19472 1.21667 0.99015 0.96023 0.82093 1.44661 1.53827 1.32097 1.00779 1.20328 0.89510 0.90270 0.88332 1.22076 1.02007 0.98000 0.99903 1.22309 0.94005 0.98383 0.90484 1.22379 1.04588 0.98506 0.95984 1.17456 0.78686 0.82084 0.84307 1.43485 1.53619 1.32405 1.08559 1.90821 1.40489 1.28248 1.85821 1.72787 1.06276 1.09011 1.13642 1.73067 1.24691 1.27344 0.93457 0.93012 0.93801 0.92020 0.92023 0.93805 0.93010 0.98649 0.98645 0.93168 0.90997 0.91011 0.74738 0.81192 0.81060 0.74870 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 8.05 71.98 0.58 -3.31 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.52 -26.09 7.65 25.60 0.20 -25.89 16 6 H 0.07 3.21 5.68 -2.91 -0.02 3.19 16 7 C 0.00 0.02 5.46 84.66 0.46 0.49 16 8 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 9 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 C 0.14 3.63 3.80 86.38 0.33 3.95 16 14 N -0.68 -16.24 5.11 -344.76 -1.76 -18.00 16 15 C 0.36 8.83 7.74 133.21 1.03 9.86 16 16 C -0.19 -4.06 9.39 22.61 0.21 -3.85 16 17 C -0.02 -0.51 9.71 22.73 0.22 -0.29 16 18 C -0.06 -1.46 6.83 42.00 0.29 -1.17 16 19 C 0.59 13.02 8.08 86.79 0.70 13.72 16 20 N -0.82 -11.36 8.86 -175.59 -1.56 -12.92 16 21 O -0.58 -16.02 17.22 -3.90 -0.07 -16.09 16 22 N -0.17 -4.18 10.73 -48.50 -0.52 -4.70 16 23 N -0.33 -8.74 11.55 -55.17 -0.64 -9.38 16 24 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.55 6.86 -2.39 -0.02 1.53 16 27 H 0.06 1.55 6.86 -2.39 -0.02 1.53 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.07 1.88 7.95 -2.39 -0.02 1.87 16 34 H 0.07 1.88 7.95 -2.39 -0.02 1.86 16 35 H 0.41 9.40 6.29 -92.71 -0.58 8.81 16 36 H 0.17 3.13 6.81 -2.91 -0.02 3.11 16 37 H 0.17 3.16 7.71 -2.91 -0.02 3.14 16 38 H 0.42 4.75 8.17 -92.70 -0.76 4.00 16 39 H 0.42 3.96 8.93 -92.71 -0.83 3.13 16 Total: -1.00 -64.20 324.26 1.40 -62.80 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -1.06 Total: 17.55 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.69 Total: -9.87 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.19 Total: -98.61 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.07 Total: -16.09 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.20 1.40 -62.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340934131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.319 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.00 seconds