Wall clock time and date at job start Tue Mar 31 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53001 * 109.46691 * 2 1 4 4 H 1.08993 * 109.47477 * 304.99858 * 3 2 1 5 5 C 1.50699 * 109.46748 * 185.00082 * 3 2 1 6 6 H 1.08005 * 119.99938 * 240.00436 * 5 3 2 7 7 C 1.37881 * 120.00065 * 59.99751 * 5 3 2 8 8 N 1.31515 * 119.99956 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99918 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47387 * 60.00349 * 9 7 5 11 11 H 1.48501 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47135 * 300.00429 * 9 7 5 13 13 N 1.46495 * 109.47116 * 65.00326 * 3 2 1 14 14 C 1.38971 * 119.99697 * 274.71765 * 13 3 2 15 15 C 1.39704 * 120.03702 * 0.02562 * 14 13 3 16 16 N 1.31901 * 120.09050 * 179.73133 * 15 14 13 17 17 C 1.32226 * 120.16419 * 0.56437 * 16 15 14 18 18 C 1.39200 * 120.06938 * 359.69168 * 17 16 15 19 19 C 1.48126 * 120.04354 * 179.97438 * 18 17 16 20 20 O 1.21520 * 120.00254 * 352.85172 * 19 18 17 21 21 N 1.34780 * 119.99996 * 172.84997 * 19 18 17 22 22 C 1.46504 * 119.99822 * 182.17698 * 21 19 18 23 23 C 1.46500 * 119.99957 * 2.16740 * 21 19 18 24 24 N 1.32322 * 120.03177 * 180.27839 * 14 13 3 25 25 H 1.09001 * 109.46883 * 59.99687 * 1 2 3 26 26 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47038 * 300.00215 * 1 2 3 28 28 H 1.08992 * 109.46874 * 239.99955 * 2 1 3 29 29 H 1.09000 * 109.46570 * 119.99869 * 2 1 3 30 30 H 0.97004 * 119.99666 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00556 * 94.99758 * 13 3 2 32 32 H 1.07995 * 119.95434 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.96471 * 179.70961 * 17 16 15 34 34 H 1.08994 * 109.47285 * 90.00058 * 22 21 19 35 35 H 1.09008 * 109.46483 * 209.99944 * 22 21 19 36 36 H 1.08994 * 109.46996 * 329.98912 * 22 21 19 37 37 H 1.09000 * 109.46795 * 83.80655 * 23 21 19 38 38 H 1.08999 * 109.47219 * 203.80293 * 23 21 19 39 39 H 1.08993 * 109.47140 * 323.81053 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5967 0.1452 -0.2343 11 1 6.3978 0.2167 -2.6504 12 1 6.5005 2.2800 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.3995 2.6870 1.3685 15 6 -0.4914 2.6551 0.2928 16 7 -1.6829 3.2097 0.4043 17 6 -2.0349 3.8075 1.5299 18 6 -1.1506 3.8479 2.6042 19 6 -1.5452 4.5183 3.8648 20 8 -2.5852 5.1444 3.9202 21 7 -0.7509 4.4337 4.9503 22 6 -1.1639 5.0564 6.2105 23 6 0.5254 3.7190 4.8701 24 7 0.0508 3.2835 2.4970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0604 -2.9503 31 1 2.2720 2.1232 1.9978 32 1 -0.2058 2.1715 -0.6296 33 1 -3.0095 4.2647 1.6160 34 1 -1.7365 4.3399 6.7993 35 1 -0.2806 5.3635 6.7706 36 1 -1.7815 5.9292 5.9991 37 1 1.2898 4.3845 4.4689 38 1 0.8191 3.3870 5.8659 39 1 0.4170 2.8541 4.2159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342832902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:19 Heat of formation + Delta-G solvation = 37.790236 kcal Electronic energy + Delta-G solvation = -21939.783329 eV Core-core repulsion = 18690.670535 eV Total energy + Delta-G solvation = -3249.112794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -40.99812 -39.29929 -36.71022 -35.64991 -34.03250 -32.91433 -31.24847 -29.88470 -28.08729 -26.86684 -26.51427 -24.39356 -23.51260 -22.69715 -20.60661 -19.44078 -18.03709 -17.24477 -16.56956 -16.38943 -15.90428 -15.65580 -15.49353 -14.92295 -14.65788 -14.08589 -13.67711 -13.31172 -12.99997 -12.79781 -12.70635 -12.56463 -12.30736 -12.19776 -12.00539 -11.51548 -11.29032 -11.09186 -10.96941 -10.63958 -10.41235 -10.32351 -10.23490 -10.01958 -9.63890 -9.27484 -8.74706 -8.66193 -8.50703 -7.16534 -6.32982 -4.42501 0.82343 1.69955 2.90425 2.95423 3.15734 3.21850 3.22654 3.60850 4.19529 4.20342 4.40264 4.75384 4.90662 4.99941 5.07995 5.24885 5.32951 5.40554 5.57818 5.66261 5.74319 5.81642 6.00624 6.08942 6.18747 6.25326 6.47137 6.57300 6.67365 6.76932 6.95375 7.10276 7.22464 7.33654 7.48763 7.58748 7.84518 8.00603 8.06041 8.23907 8.39336 8.67124 9.25457 10.72567 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.004538 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.714838 B = 6169.088538 C = 6871.979249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.272 3.728 4 H 0.045 0.955 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.364 3.636 15 C 0.022 3.978 16 N -0.412 5.412 17 C 0.013 3.987 18 C 0.072 3.928 19 C 0.577 3.423 20 O -0.538 6.538 21 N -0.604 5.604 22 C 0.084 3.916 23 C 0.075 3.925 24 N -0.498 5.498 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.268 0.732 31 H 0.399 0.601 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 3.303 10.287 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.063 0.937 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.732 3.268 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.307 5.307 14 C 0.119 3.881 15 C -0.151 4.151 16 N -0.124 5.124 17 C -0.147 4.147 18 C -0.068 4.068 19 C 0.363 3.637 20 O -0.414 6.414 21 N -0.336 5.336 22 C -0.059 4.059 23 C -0.067 4.067 24 N -0.227 5.227 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.197 0.803 33 H 0.184 0.816 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.173 3.459 9.980 11.761 hybrid contribution 1.429 -0.097 0.290 1.461 sum -3.744 3.362 10.270 11.437 Atomic orbital electron populations 1.22199 0.99031 0.99963 0.99950 1.22079 0.91981 0.99910 1.03359 1.18992 0.95391 0.88930 0.79696 0.93700 1.21076 0.90055 1.39623 1.06654 0.91789 1.24854 0.98939 0.94416 0.95179 1.69832 1.35538 1.37223 1.09352 0.86451 0.84338 0.78472 0.77583 1.20057 1.21016 1.20085 1.45537 1.10555 1.55870 1.18750 1.19739 0.88849 0.89698 0.89857 1.23986 0.90036 1.00717 1.00374 1.68387 1.15892 1.04842 1.23278 1.23085 1.01272 1.01361 0.88970 1.21522 0.91584 0.98258 0.95469 1.17907 0.83200 0.79992 0.82579 1.90750 1.24296 1.42422 1.83977 1.47637 1.21353 1.54129 1.10509 1.21686 1.00730 0.98644 0.84808 1.22442 0.83396 0.99057 1.01837 1.68356 1.17144 1.14199 1.23027 0.92936 0.94321 0.94440 0.87538 0.94107 0.92199 0.76631 0.80255 0.81557 0.92679 0.91158 0.90492 0.92455 0.92583 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.23 37.16 0.31 -2.47 16 2 C -0.13 -2.76 5.45 -26.72 -0.15 -2.91 16 3 C 0.27 5.79 2.20 -69.08 -0.15 5.64 16 4 H 0.05 1.04 6.45 -51.93 -0.34 0.71 16 5 C -0.54 -12.70 8.73 -34.44 -0.30 -13.00 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.88 -22.19 11.30 55.43 0.63 -21.56 16 9 Si 0.90 19.20 29.54 -169.99 -5.02 14.18 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 N -0.68 -12.56 5.17 -54.93 -0.28 -12.84 16 14 C 0.36 6.51 6.49 -154.90 -1.01 5.50 16 15 C 0.02 0.40 7.91 -16.97 -0.13 0.26 16 16 N -0.41 -7.36 10.48 -12.54 -0.13 -7.49 16 17 C 0.01 0.21 10.76 -17.02 -0.18 0.03 16 18 C 0.07 1.20 6.61 -82.87 -0.55 0.65 16 19 C 0.58 9.24 7.66 -12.20 -0.09 9.14 16 20 O -0.54 -9.54 15.92 5.35 0.09 -9.45 16 21 N -0.60 -8.02 3.27 -190.54 -0.62 -8.64 16 22 C 0.08 0.85 10.43 59.85 0.62 1.47 16 23 C 0.08 0.89 9.32 59.85 0.56 1.45 16 24 N -0.50 -8.32 6.25 -8.82 -0.06 -8.37 16 25 H 0.05 0.93 6.35 -51.93 -0.33 0.60 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.67 5.42 -51.93 -0.28 0.39 16 28 H 0.11 2.47 5.95 -51.93 -0.31 2.16 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.40 6.93 8.66 -40.82 -0.35 6.58 16 32 H 0.18 3.30 4.02 -52.49 -0.21 3.09 16 33 H 0.17 2.56 7.65 -52.49 -0.40 2.16 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.07 -51.92 -0.42 0.12 16 36 H 0.08 0.84 7.39 -51.93 -0.38 0.45 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.52 8.03 -51.93 -0.42 0.11 16 39 H 0.11 1.54 5.26 -52.02 -0.27 1.26 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -25.95 314.18 -6.79 -32.73 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.95 Total: 9.33 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.17 Total: 7.39 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.47 Total: -58.91 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.95 -6.79 -32.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342832902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.521 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.53 seconds