Wall clock time and date at job start Tue Mar 31 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53001 * 109.46691 * 2 1 4 4 H 1.08993 * 109.47477 * 304.99858 * 3 2 1 5 5 C 1.50699 * 109.46748 * 185.00082 * 3 2 1 6 6 H 1.08005 * 119.99938 * 240.00436 * 5 3 2 7 7 C 1.37881 * 120.00065 * 59.99751 * 5 3 2 8 8 N 1.31515 * 119.99956 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99918 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47387 * 60.00349 * 9 7 5 11 11 H 1.48501 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47135 * 300.00429 * 9 7 5 13 13 N 1.46495 * 109.47116 * 65.00326 * 3 2 1 14 14 C 1.38971 * 119.99697 * 274.71765 * 13 3 2 15 15 C 1.39704 * 120.03702 * 0.02562 * 14 13 3 16 16 N 1.31901 * 120.09050 * 179.73133 * 15 14 13 17 17 C 1.32226 * 120.16419 * 0.56437 * 16 15 14 18 18 C 1.39200 * 120.06938 * 359.69168 * 17 16 15 19 19 C 1.48126 * 120.04354 * 179.97438 * 18 17 16 20 20 O 1.21520 * 120.00254 * 352.85172 * 19 18 17 21 21 N 1.34780 * 119.99996 * 172.84997 * 19 18 17 22 22 C 1.46504 * 119.99822 * 182.17698 * 21 19 18 23 23 C 1.46500 * 119.99957 * 2.16740 * 21 19 18 24 24 N 1.32322 * 120.03177 * 180.27839 * 14 13 3 25 25 H 1.09001 * 109.46883 * 59.99687 * 1 2 3 26 26 H 1.09002 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47038 * 300.00215 * 1 2 3 28 28 H 1.08992 * 109.46874 * 239.99955 * 2 1 3 29 29 H 1.09000 * 109.46570 * 119.99869 * 2 1 3 30 30 H 0.97004 * 119.99666 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00556 * 94.99758 * 13 3 2 32 32 H 1.07995 * 119.95434 * 0.02562 * 15 14 13 33 33 H 1.08000 * 119.96471 * 179.70961 * 17 16 15 34 34 H 1.08994 * 109.47285 * 90.00058 * 22 21 19 35 35 H 1.09008 * 109.46483 * 209.99944 * 22 21 19 36 36 H 1.08994 * 109.46996 * 329.98912 * 22 21 19 37 37 H 1.09000 * 109.46795 * 83.80655 * 23 21 19 38 38 H 1.08999 * 109.47219 * 203.80293 * 23 21 19 39 39 H 1.08993 * 109.47140 * 323.81053 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3811 10 1 6.5967 0.1452 -0.2343 11 1 6.3978 0.2167 -2.6504 12 1 6.5005 2.2800 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.3995 2.6870 1.3685 15 6 -0.4914 2.6551 0.2928 16 7 -1.6829 3.2097 0.4043 17 6 -2.0349 3.8075 1.5299 18 6 -1.1506 3.8479 2.6042 19 6 -1.5452 4.5183 3.8648 20 8 -2.5852 5.1444 3.9202 21 7 -0.7509 4.4337 4.9503 22 6 -1.1639 5.0564 6.2105 23 6 0.5254 3.7190 4.8701 24 7 0.0508 3.2835 2.4970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0604 -2.9503 31 1 2.2720 2.1232 1.9978 32 1 -0.2058 2.1715 -0.6296 33 1 -3.0095 4.2647 1.6160 34 1 -1.7365 4.3399 6.7993 35 1 -0.2806 5.3635 6.7706 36 1 -1.7815 5.9292 5.9991 37 1 1.2898 4.3845 4.4689 38 1 0.8191 3.3870 5.8659 39 1 0.4170 2.8541 4.2159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342832902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:18 Heat of formation + Delta-G solvation = 21.927079 kcal Electronic energy + Delta-G solvation = -21940.471207 eV Core-core repulsion = 18690.670535 eV Total energy + Delta-G solvation = -3249.800672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.35476 -40.54224 -38.26670 -36.80352 -35.44243 -34.57270 -32.82067 -31.34464 -29.02882 -28.51557 -27.69407 -25.65903 -25.15581 -24.12706 -22.08289 -20.78334 -19.55526 -18.56938 -18.03742 -17.79594 -17.10516 -17.04384 -16.83767 -16.54768 -16.03310 -15.60778 -14.90718 -14.64350 -14.46226 -14.14342 -13.81542 -13.75640 -13.62967 -13.42731 -13.18261 -13.06478 -12.85766 -12.74264 -12.57099 -12.10785 -11.91867 -11.82201 -11.63261 -11.58275 -11.18500 -10.97063 -10.45351 -9.95831 -9.71339 -8.62785 -8.17107 -6.31585 -0.53579 0.29750 1.47553 1.49038 1.55429 1.62805 1.85256 2.16314 2.46760 2.82305 3.13542 3.14456 3.37305 3.50623 3.93456 4.20452 4.30696 4.37403 4.46166 4.49686 4.55124 4.59361 4.67057 4.86304 4.90229 4.94452 5.14578 5.18917 5.27313 5.34018 5.50231 5.55871 5.63863 5.79040 5.88021 6.13637 6.14750 6.49040 6.67573 6.72668 6.92847 7.06906 7.39714 8.87215 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.004538 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.714838 B = 6169.088538 C = 6871.979249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.281 3.719 4 H 0.023 0.977 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.960 3.040 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.357 3.643 15 C 0.012 3.988 16 N -0.418 5.418 17 C 0.013 3.987 18 C 0.069 3.931 19 C 0.571 3.429 20 O -0.560 6.560 21 N -0.598 5.598 22 C 0.079 3.921 23 C 0.076 3.924 24 N -0.482 5.482 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.267 0.733 31 H 0.404 0.596 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 3.651 12.101 13.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.178 3.822 4 H 0.041 0.959 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.174 4.174 8 N -0.544 5.544 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.307 5.307 14 C 0.113 3.887 15 C -0.160 4.160 16 N -0.131 5.131 17 C -0.148 4.148 18 C -0.072 4.072 19 C 0.357 3.643 20 O -0.440 6.440 21 N -0.329 5.329 22 C -0.062 4.062 23 C -0.066 4.066 24 N -0.210 5.210 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.867 3.806 11.831 13.347 hybrid contribution 1.284 -0.145 -0.172 1.303 sum -3.583 3.661 11.659 12.735 Atomic orbital electron populations 1.22058 0.97040 1.00848 0.99977 1.21894 0.93666 0.99042 1.01884 1.18671 0.94170 0.89225 0.80147 0.95888 1.21413 0.91443 1.39180 1.06604 0.91658 1.25524 1.02387 0.94353 0.95108 1.69947 1.36767 1.37982 1.09703 0.85579 0.80213 0.78223 0.77414 1.19515 1.21182 1.20090 1.45177 1.11056 1.56448 1.18034 1.19714 0.88586 0.90165 0.90250 1.23897 0.90387 1.01371 1.00373 1.68384 1.15796 1.05057 1.23856 1.23368 1.01902 1.00791 0.88691 1.21803 0.91382 0.97897 0.96105 1.17833 0.83409 0.80114 0.82967 1.90739 1.25311 1.43602 1.84317 1.47800 1.21100 1.53264 1.10721 1.21925 1.02228 0.98476 0.83597 1.22442 0.82625 0.98104 1.03469 1.68496 1.17058 1.13341 1.22131 0.93014 0.92951 0.94268 0.90080 0.94320 0.92400 0.75966 0.80927 0.80193 0.91322 0.88164 0.91410 0.92616 0.89308 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.23 71.99 0.59 -4.47 16 2 C -0.13 -5.20 5.45 30.60 0.17 -5.04 16 3 C 0.28 12.08 2.20 44.25 0.10 12.18 16 4 H 0.02 1.11 6.45 -2.39 -0.02 1.09 16 5 C -0.55 -26.01 8.73 25.60 0.22 -25.79 16 6 H 0.07 3.01 7.74 -2.91 -0.02 2.99 16 7 C 0.03 1.35 5.29 84.66 0.45 1.79 16 8 N -0.91 -46.16 11.30 21.45 0.24 -45.92 16 9 Si 0.96 39.19 29.54 68.60 2.03 41.22 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 13 N -0.68 -24.87 5.17 -327.71 -1.69 -26.56 16 14 C 0.36 12.58 6.49 133.24 0.87 13.45 16 15 C 0.01 0.42 7.91 85.04 0.67 1.10 16 16 N -0.42 -14.75 10.48 -193.60 -2.03 -16.78 16 17 C 0.01 0.41 10.76 84.87 0.91 1.32 16 18 C 0.07 2.23 6.61 41.80 0.28 2.51 16 19 C 0.57 17.40 7.66 86.87 0.67 18.06 16 20 O -0.56 -19.21 15.92 -3.78 -0.06 -19.27 16 21 N -0.60 -14.40 3.27 -875.03 -2.87 -17.27 16 22 C 0.08 1.37 10.43 127.77 1.33 2.70 16 23 C 0.08 1.59 9.32 127.77 1.19 2.79 16 24 N -0.48 -15.53 6.25 -181.80 -1.14 -16.67 16 25 H 0.05 1.84 6.35 -2.39 -0.02 1.83 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.37 5.42 -2.39 -0.01 1.36 16 28 H 0.08 3.82 5.95 -2.39 -0.01 3.81 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 31 H 0.40 13.78 8.66 -92.70 -0.80 12.97 16 32 H 0.17 6.47 4.02 -2.91 -0.01 6.46 16 33 H 0.18 5.35 7.65 -2.91 -0.02 5.33 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.15 8.07 -2.38 -0.02 1.13 16 36 H 0.07 1.33 7.39 -2.39 -0.02 1.31 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 39 H 0.10 2.40 5.26 -2.56 -0.01 2.38 16 Total: -1.00 -54.58 314.18 2.21 -52.37 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.29 Total: 28.28 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 7.44 Total: 20.59 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -7.48 Total: -123.19 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -54.58 2.21 -52.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342832902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.293 kcal (2) G-P(sol) polarization free energy of solvation -54.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds