Wall clock time and date at job start Tue Mar 31 2020 00:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 H 1.09000 * 109.47336 * 305.00330 * 3 2 1 5 5 C 1.50704 * 109.47096 * 184.99783 * 3 2 1 6 6 H 1.08003 * 119.99957 * 240.00015 * 5 3 2 7 7 C 1.37877 * 119.99666 * 60.00064 * 5 3 2 8 8 N 1.31506 * 120.00310 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99625 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47190 * 60.00233 * 9 7 5 11 11 H 1.48506 * 109.47042 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47587 * 300.00134 * 9 7 5 13 13 N 1.46502 * 109.47177 * 64.99950 * 3 2 1 14 14 C 1.34775 * 119.99856 * 274.99926 * 13 3 2 15 15 O 1.21273 * 120.00095 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99679 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.43209 * 300.05690 * 16 14 13 18 18 C 1.53143 * 109.44940 * 180.11399 * 16 14 13 19 19 C 1.53466 * 109.30000 * 170.53701 * 18 16 14 20 20 C 1.50799 * 108.13573 * 48.72123 * 19 18 16 21 21 N 1.29830 * 128.53026 * 164.09642 * 20 19 18 22 22 N 1.28910 * 109.48508 * 180.10565 * 21 20 19 23 23 C 1.30834 * 109.73815 * 359.96442 * 22 21 20 24 24 N 1.34506 * 107.13906 * 0.08314 * 23 22 21 25 25 C 1.46254 * 129.01252 * 180.31854 * 24 23 22 26 26 H 1.08997 * 109.46741 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47139 * 299.99819 * 1 2 3 28 28 H 1.08996 * 109.46692 * 59.99984 * 1 2 3 29 29 H 1.08999 * 109.47139 * 240.00181 * 2 1 3 30 30 H 1.09005 * 109.47118 * 119.99579 * 2 1 3 31 31 H 0.96996 * 120.00630 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99991 * 94.99668 * 13 3 2 33 33 H 1.09005 * 109.49825 * 290.48669 * 18 16 14 34 34 H 1.08996 * 109.50023 * 50.58558 * 18 16 14 35 35 H 1.09001 * 109.72706 * 168.37570 * 19 18 16 36 36 H 1.08991 * 109.73106 * 289.01038 * 19 18 16 37 37 H 1.07993 * 126.46760 * 179.97438 * 23 22 21 38 38 H 1.09002 * 109.59630 * 42.84369 * 25 24 23 39 39 H 1.09003 * 109.59209 * 282.54144 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3375 -2.1732 9 14 6.0049 0.8814 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2168 -2.6503 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3377 2.6549 17 1 0.0684 2.6127 3.4682 18 6 -1.3852 3.8919 2.5216 19 6 -1.8767 4.3636 3.8968 20 6 -0.8027 5.2280 4.5079 21 7 -0.8977 6.0490 5.5092 22 7 0.2475 6.6011 5.7227 23 6 1.1228 6.1503 4.8611 24 7 0.4830 5.2714 4.0690 25 6 1.0089 4.4843 2.9541 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 3.8293 -0.0603 -2.9502 32 1 2.2719 2.1232 1.9978 33 1 -1.3844 4.7324 1.8275 34 1 -2.0467 3.1108 2.1471 35 1 -2.7932 4.9422 3.7813 36 1 -2.0641 3.5012 4.5363 37 1 2.1634 6.4319 4.7962 38 1 1.9835 4.0764 3.2223 39 1 1.1080 5.1189 2.0734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346718212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:34 Heat of formation + Delta-G solvation = 10.330167 kcal Electronic energy + Delta-G solvation = -22001.418545 eV Core-core repulsion = 18751.114994 eV Total energy + Delta-G solvation = -3250.303552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.28972 -41.03533 -38.02255 -36.80262 -34.64095 -34.29002 -33.05159 -31.79513 -30.16431 -28.83246 -26.08774 -25.09440 -24.17273 -23.26750 -22.16668 -21.21001 -20.48584 -18.99956 -18.15913 -17.62419 -17.22609 -17.03666 -16.62783 -16.05360 -15.80050 -15.32271 -15.21032 -14.98739 -14.64795 -14.56443 -13.86632 -13.48520 -13.20650 -13.14546 -12.94047 -12.86538 -12.63807 -12.61072 -12.26922 -12.17512 -12.04128 -11.97050 -11.55008 -11.38330 -11.12167 -11.03164 -10.67985 -10.48244 -10.19610 -9.62952 -8.14134 -6.30888 0.87497 1.42308 1.47562 1.47898 1.55354 1.81691 1.84565 2.34256 2.56916 3.15567 3.17029 3.37831 3.52331 3.61556 3.87446 4.02941 4.17989 4.22251 4.29921 4.49885 4.53106 4.61123 4.62371 4.77679 4.79952 4.97890 5.01675 5.09723 5.12560 5.23096 5.30835 5.46374 5.58833 5.63254 5.82528 5.90496 5.93745 6.20104 6.77651 6.97196 7.36138 7.57004 7.69987 8.90572 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.004462 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.066950 B = 6273.616172 C = 7237.065672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.271 1.271 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.574 6.574 16 C -0.111 4.111 17 H 0.128 0.872 18 C -0.100 4.100 19 C -0.026 4.026 20 C 0.176 3.824 21 N -0.335 5.335 22 N -0.350 5.350 23 C 0.169 3.831 24 N -0.469 5.469 25 C 0.117 3.883 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.404 0.596 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.258 0.742 38 H 0.131 0.869 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 4.876 10.991 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.454 6.454 16 C -0.133 4.133 17 H 0.146 0.854 18 C -0.139 4.139 19 C -0.066 4.066 20 C -0.093 4.093 21 N -0.174 5.174 22 N -0.189 5.189 23 C -0.120 4.120 24 N -0.159 5.159 25 C -0.006 4.006 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.274 0.726 38 H 0.149 0.851 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.553 5.553 11.286 13.377 hybrid contribution 1.851 -0.765 -1.353 2.417 sum -2.702 4.788 9.934 11.354 Atomic orbital electron populations 1.21685 0.96860 0.99123 1.00451 1.21806 0.93851 0.99373 1.01235 1.18346 0.93474 0.89097 0.81518 0.98038 1.21562 0.91551 1.38759 1.06532 0.90705 1.25695 1.02774 0.94553 0.95236 1.70027 1.36993 1.38424 1.09854 0.85521 0.79768 0.78417 0.77361 1.19081 1.21740 1.19596 1.46282 1.15413 1.55726 1.17566 1.20509 0.81910 0.78836 0.89094 1.90706 1.52142 1.60921 1.41645 1.21621 0.97061 0.97737 0.96832 0.85441 1.21471 0.94134 1.02078 0.96167 1.20370 0.93680 0.97735 0.94774 1.25383 0.87393 1.00937 0.95610 1.73956 1.17202 1.10607 1.15675 1.74392 0.96969 1.23854 1.23643 1.26970 1.02683 0.92283 0.90049 1.46266 1.09643 1.33153 1.26853 1.22055 0.98657 0.92185 0.87676 0.93945 0.93213 0.95528 0.91345 0.94052 0.92748 0.76048 0.91623 0.88694 0.86844 0.86681 0.72620 0.85150 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.51 71.98 0.61 -4.40 16 2 C -0.12 -5.54 5.45 30.60 0.17 -5.38 16 3 C 0.28 12.67 2.24 44.25 0.10 12.77 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -26.06 8.73 25.60 0.22 -25.84 16 6 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -49.58 11.29 21.45 0.24 -49.34 16 9 Si 0.96 39.42 29.54 68.60 2.03 41.45 16 10 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 13 N -0.70 -23.20 4.93 -446.08 -2.20 -25.39 16 14 C 0.51 15.56 5.70 87.66 0.50 16.06 16 15 O -0.57 -22.58 12.96 -3.01 -0.04 -22.62 16 16 C -0.11 -2.17 2.54 -11.38 -0.03 -2.20 16 17 H 0.13 2.01 8.12 -2.39 -0.02 1.99 16 18 C -0.10 -1.92 4.68 30.80 0.14 -1.78 16 19 C -0.03 -0.44 6.34 30.04 0.19 -0.25 16 20 C 0.18 4.01 7.75 138.07 1.07 5.08 16 21 N -0.34 -9.81 12.21 -50.16 -0.61 -10.42 16 22 N -0.35 -9.88 12.23 -60.43 -0.74 -10.62 16 23 C 0.17 3.33 12.82 180.34 2.31 5.64 16 24 N -0.47 -9.12 3.12 -519.40 -1.62 -10.73 16 25 C 0.12 1.93 6.14 86.53 0.53 2.46 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.86 5.64 -2.39 -0.01 1.85 16 28 H 0.03 1.17 7.85 -2.39 -0.02 1.15 16 29 H 0.07 3.54 5.95 -2.39 -0.01 3.52 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.72 16 31 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.40 10.65 8.18 -92.71 -0.76 9.89 16 33 H 0.06 1.43 8.12 -2.38 -0.02 1.41 16 34 H 0.09 1.93 7.79 -2.39 -0.02 1.91 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.26 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.13 1.51 7.87 -2.39 -0.02 1.49 16 39 H 0.10 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -68.87 315.69 3.64 -65.23 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.31 Total: 18.94 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.27 Total: 3.51 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.92 Total: -106.51 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.04 Total: -22.62 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -68.87 3.64 -65.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346718212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.564 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds