Wall clock time and date at job start Tue Mar 31 2020 00:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 6 6 H 1.08003 * 119.99742 * 240.00283 * 5 3 2 7 7 C 1.37873 * 119.99873 * 60.00145 * 5 3 2 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47061 * 59.99778 * 9 7 5 11 11 H 1.48494 * 109.47452 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46988 * 300.00348 * 9 7 5 13 13 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 3 2 15 15 O 1.21279 * 120.00185 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99614 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.45056 * 60.00312 * 16 14 13 18 18 C 1.53138 * 109.44848 * 179.97438 * 16 14 13 19 19 C 1.53471 * 109.30251 * 189.48685 * 18 16 14 20 20 C 1.50800 * 108.11839 * 311.25199 * 19 18 16 21 21 N 1.29838 * 128.52582 * 195.97832 * 20 19 18 22 22 N 1.28916 * 109.47608 * 179.84793 * 21 20 19 23 23 C 1.30835 * 109.74193 * 0.02562 * 22 21 20 24 24 N 1.34692 * 107.07232 * 0.03223 * 23 22 21 25 25 C 1.46257 * 128.84829 * 179.88937 * 24 23 22 26 26 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 28 28 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 29 29 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 30 30 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 31 31 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 32 32 H 0.97004 * 120.00223 * 94.99655 * 13 3 2 33 33 H 1.09004 * 109.50202 * 309.41294 * 18 16 14 34 34 H 1.08999 * 109.50045 * 69.51916 * 18 16 14 35 35 H 1.09002 * 109.73538 * 191.60307 * 19 18 16 36 36 H 1.08997 * 109.74666 * 70.90647 * 19 18 16 37 37 H 1.07997 * 126.46515 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.58905 * 77.28998 * 25 24 23 39 39 H 1.08997 * 109.59311 * 316.84726 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3820 10 1 6.5975 0.1474 -0.2351 11 1 6.3977 0.2180 -2.6511 12 1 6.4994 2.2817 -1.3823 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0363 3.3375 2.6550 17 1 0.7279 4.1527 2.8678 18 6 -1.3837 3.8948 2.5206 19 6 -1.6986 4.7792 3.7348 20 6 -1.3207 4.0176 4.9803 21 7 -1.6665 4.2544 6.2091 22 7 -1.1365 3.3699 6.9829 23 6 -0.4274 2.5300 6.2733 24 7 -0.5245 2.9185 4.9873 25 6 0.0821 2.3185 3.7993 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0611 -2.9499 32 1 2.2720 2.1231 1.9979 33 1 -1.4568 4.4888 1.6096 34 1 -2.0954 3.0704 2.4762 35 1 -2.7634 5.0116 3.7545 36 1 -1.1209 5.7017 3.6781 37 1 0.1306 1.6846 6.6480 38 1 -0.4751 1.4256 3.5159 39 1 1.1177 2.0535 4.0120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346718240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:42 Heat of formation + Delta-G solvation = 28.886144 kcal Electronic energy + Delta-G solvation = -22054.615721 eV Core-core repulsion = 18805.116817 eV Total energy + Delta-G solvation = -3249.498904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.38691 -39.73374 -36.92121 -35.22535 -33.73015 -32.62731 -31.55642 -30.61534 -29.23101 -27.08227 -25.12498 -23.69700 -22.86918 -22.37023 -20.81534 -19.69284 -19.39841 -17.65152 -17.14062 -16.47396 -15.90673 -15.60156 -15.37845 -14.67245 -14.57472 -14.33362 -14.27408 -13.82675 -13.48954 -12.83610 -12.63602 -12.11124 -11.95386 -11.68452 -11.60340 -11.38360 -11.34095 -11.16139 -11.10290 -10.93412 -10.47170 -10.45727 -10.32260 -10.24725 -9.78814 -9.27304 -9.26340 -9.19009 -8.62816 -8.04537 -6.24088 -4.34596 1.72491 2.30317 2.78297 3.03802 3.17187 3.23731 3.23865 3.71475 4.01485 4.23981 4.26484 4.37021 4.48188 4.66049 4.86241 4.95948 5.07642 5.09018 5.21656 5.34610 5.48271 5.55476 5.81866 5.85581 5.98213 6.07309 6.23968 6.28292 6.49455 6.71778 6.86009 7.03310 7.17798 7.24559 7.45883 7.56768 7.74654 8.03883 8.43274 8.61472 8.62436 8.88195 9.33134 10.81009 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027599 B = 0.004180 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.275362 B = 6696.299177 C = 7045.865068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.509 3.491 15 O -0.535 6.535 16 C -0.126 4.126 17 H 0.105 0.895 18 C -0.105 4.105 19 C -0.035 4.035 20 C 0.180 3.820 21 N -0.297 5.297 22 N -0.305 5.305 23 C 0.153 3.847 24 N -0.469 5.469 25 C 0.114 3.886 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.219 0.781 38 H 0.098 0.902 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 3.293 9.902 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.292 3.708 15 O -0.413 6.413 16 C -0.148 4.148 17 H 0.123 0.877 18 C -0.144 4.144 19 C -0.075 4.075 20 C -0.088 4.088 21 N -0.137 5.137 22 N -0.144 5.144 23 C -0.135 4.135 24 N -0.160 5.160 25 C -0.009 4.009 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.283 3.776 10.212 12.571 hybrid contribution 2.141 -0.878 -0.754 2.433 sum -4.142 2.898 9.458 10.725 Atomic orbital electron populations 1.21844 0.98354 0.98158 1.01091 1.21947 0.92536 0.99743 1.02447 1.18830 0.94340 0.89180 0.80759 0.93152 1.21160 0.90581 1.39496 1.06460 0.92156 1.24870 0.98657 0.94658 0.95325 1.69866 1.35342 1.37258 1.09315 0.86518 0.84729 0.78376 0.77552 1.20141 1.21060 1.20156 1.46586 1.14367 1.55528 1.18754 1.19817 0.83127 0.79672 0.88197 1.90710 1.51385 1.59111 1.40082 1.21754 1.00492 0.98830 0.93745 0.87705 1.21536 0.94259 1.00321 0.98246 1.20317 1.03682 0.97180 0.86289 1.24900 0.95880 0.90358 0.97654 1.74057 1.21190 1.19941 0.98504 1.74465 1.11099 1.02704 1.26181 1.26275 1.03756 1.03104 0.80332 1.46201 1.37671 1.23458 1.08697 1.22009 1.00191 0.96784 0.81949 0.95746 0.94561 0.93046 0.88156 0.95011 0.92377 0.78034 0.88354 0.90449 0.87906 0.88570 0.76473 0.88395 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.51 37.16 0.32 -2.43 16 2 C -0.13 -2.82 5.45 -26.73 -0.15 -2.97 16 3 C 0.27 6.12 2.24 -69.08 -0.15 5.96 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.13 8.73 -34.44 -0.30 -13.43 16 6 H 0.06 1.40 7.74 -52.48 -0.41 1.00 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.37 11.29 55.43 0.63 -22.74 16 9 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -12.23 4.92 -54.93 -0.27 -12.50 16 14 C 0.51 8.13 5.71 -10.98 -0.06 8.07 16 15 O -0.54 -10.55 12.96 5.56 0.07 -10.48 16 16 C -0.13 -1.41 2.54 -91.54 -0.23 -1.64 16 17 H 0.10 1.06 8.12 -51.93 -0.42 0.64 16 18 C -0.11 -1.12 4.68 -26.42 -0.12 -1.24 16 19 C -0.04 -0.34 6.34 -27.59 -0.17 -0.51 16 20 C 0.18 2.23 7.75 -155.29 -1.20 1.03 16 21 N -0.30 -4.50 12.21 32.76 0.40 -4.10 16 22 N -0.31 -4.48 12.23 29.58 0.36 -4.12 16 23 C 0.15 1.70 12.83 -90.41 -1.16 0.54 16 24 N -0.47 -5.17 3.11 -115.53 -0.36 -5.53 16 25 C 0.11 1.10 6.14 -4.02 -0.02 1.08 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.68 5.64 -51.93 -0.29 0.38 16 28 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 29 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.39 5.67 8.18 -40.82 -0.33 5.34 16 33 H 0.10 1.09 7.79 -51.93 -0.40 0.68 16 34 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.22 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.10 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.10 0.81 7.87 -51.93 -0.41 0.40 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -30.87 315.68 -8.26 -39.13 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.47 Total: 4.96 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.36 Total: -3.91 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.76 Total: -48.98 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.87 -8.26 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346718240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.015 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds