Wall clock time and date at job start Tue Mar 31 2020 00:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53007 * 109.46684 * 119.99865 * 2 1 3 5 5 C 1.50704 * 109.47112 * 174.99787 * 4 2 1 6 6 N 1.31794 * 119.04162 * 269.73562 * 5 4 2 7 7 C 1.32266 * 120.88807 * 179.71653 * 6 5 4 8 8 C 1.39222 * 119.01933 * 0.54265 * 7 6 5 9 9 N 1.40002 * 120.86925 * 179.71156 * 8 7 6 10 10 C 1.34779 * 120.00129 * 32.40634 * 9 8 7 11 11 O 1.21587 * 119.99992 * 5.30647 * 10 9 8 12 12 N 1.34781 * 120.00061 * 185.29445 * 10 9 8 13 13 C 1.46497 * 119.99965 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46899 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00750 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99778 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99957 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47350 * 59.99703 * 18 16 14 20 20 H 1.48498 * 109.46846 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46931 * 299.99382 * 18 16 14 22 22 C 1.39225 * 118.26271 * 359.73086 * 8 7 6 23 23 N 1.31800 * 119.03706 * 89.99686 * 5 4 2 24 24 H 1.09000 * 109.47515 * 300.00236 * 1 2 3 25 25 H 1.09003 * 109.46793 * 60.00004 * 1 2 3 26 26 H 1.08999 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47515 * 239.99764 * 2 1 3 28 28 H 1.08990 * 109.47238 * 299.99432 * 3 2 1 29 29 H 1.08996 * 109.47225 * 59.99914 * 3 2 1 30 30 H 1.09004 * 109.47329 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47223 * 55.00360 * 4 2 1 32 32 H 1.08999 * 109.47026 * 295.00003 * 4 2 1 33 33 H 1.08007 * 120.48973 * 180.26903 * 7 6 5 34 34 H 0.96999 * 119.99909 * 212.41364 * 9 8 7 35 35 H 0.97001 * 119.99385 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.47076 * 300.00815 * 13 12 10 37 37 H 1.08997 * 109.46924 * 60.00691 * 13 12 10 38 38 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.49600 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1891 6 7 4.0847 -1.8888 0.6233 7 6 5.3987 -2.0186 0.5454 8 6 6.2088 -1.0216 1.0821 9 7 7.6041 -1.1223 1.0264 10 6 8.1942 -1.7386 -0.0169 11 8 7.5231 -2.1214 -0.9557 12 7 9.5283 -1.9302 -0.0196 13 6 10.1697 -2.6005 -1.1534 14 6 11.6543 -2.6889 -0.9104 15 1 12.0779 -2.2856 -0.0025 16 6 12.4721 -3.2836 -1.8477 17 7 11.9564 -3.7742 -2.9536 18 14 14.3123 -3.3937 -1.5461 19 1 14.5651 -4.1697 -0.3055 20 1 14.9624 -4.0731 -2.6955 21 1 14.8722 -2.0263 -1.3976 22 6 5.5951 0.0781 1.6758 23 7 4.2741 0.1355 1.7084 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6768 1.9562 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1370 33 1 5.8367 -2.8874 0.0765 34 1 8.1461 -0.7487 1.7388 35 1 10.0636 -1.6249 0.7295 36 1 9.7591 -3.6045 -1.2616 37 1 9.9835 -2.0318 -2.0644 38 1 12.5318 -4.1923 -3.6132 39 1 6.1888 0.8722 2.1038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348941494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:08 Heat of formation + Delta-G solvation = 0.979145 kcal Electronic energy + Delta-G solvation = -20695.163214 eV Core-core repulsion = 17444.454171 eV Total energy + Delta-G solvation = -3250.709043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29249 -39.50904 -36.64408 -35.02293 -34.32897 -33.61858 -32.50503 -30.78491 -27.81534 -27.27771 -26.59371 -24.71641 -23.37092 -22.27900 -20.59054 -20.29264 -18.76509 -17.58604 -17.10151 -16.74146 -16.02877 -15.28936 -15.07812 -14.91200 -14.69945 -14.20473 -13.89009 -13.75149 -13.50166 -13.26252 -12.59410 -12.39456 -12.20415 -12.07754 -12.01935 -11.65795 -11.23554 -11.06435 -11.00366 -10.95670 -10.83855 -10.68343 -10.64179 -10.39365 -9.75076 -9.50128 -9.16350 -8.84787 -8.38097 -7.94149 -6.23885 -4.31703 0.91602 1.13090 2.87046 3.20674 3.26241 3.27518 3.47015 3.84735 3.96760 4.21338 4.24752 4.51004 4.73645 4.78331 4.80713 4.88944 5.02946 5.12471 5.28887 5.44105 5.50230 5.55384 5.66896 5.73649 5.77755 5.93933 5.98555 6.15393 6.18553 6.25736 6.63625 6.78999 7.05202 7.23818 7.36630 7.41606 7.67701 7.88820 8.15497 8.53354 8.70937 8.99698 9.35020 10.86116 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.002799 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.139339 B =10000.806385 C =10247.401309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.041 4.041 5 C 0.284 3.716 6 N -0.495 5.495 7 C 0.148 3.852 8 C 0.079 3.921 9 N -0.684 5.684 10 C 0.689 3.311 11 O -0.581 6.581 12 N -0.716 5.716 13 C 0.265 3.735 14 C -0.547 4.547 15 H 0.063 0.937 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.110 3.890 23 N -0.494 5.494 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.181 0.819 34 H 0.407 0.593 35 H 0.390 0.610 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.268 0.732 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.211 8.379 10.876 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.080 4.080 5 C 0.016 3.984 6 N -0.209 5.209 7 C -0.021 4.021 8 C -0.023 4.023 9 N -0.333 5.333 10 C 0.389 3.611 11 O -0.459 6.459 12 N -0.368 5.368 13 C 0.145 3.855 14 C -0.585 4.585 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.059 4.059 23 N -0.207 5.207 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.198 0.802 34 H 0.243 0.757 35 H 0.223 0.777 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.616 7.923 9.809 21.664 hybrid contribution 2.756 0.203 0.677 2.845 sum -14.860 8.126 10.487 19.921 Atomic orbital electron populations 1.21810 0.94582 1.01878 1.01867 1.21062 0.95796 0.96596 0.97581 1.21834 1.01574 0.95408 1.01357 1.20416 0.85912 1.02252 0.99469 1.23004 0.97616 0.86233 0.91524 1.68283 1.12544 1.24391 1.15671 1.23531 0.87778 0.97407 0.93426 1.19361 0.84867 0.96347 1.01770 1.42688 1.03721 1.61610 1.25292 1.16191 0.83534 0.79418 0.81931 1.90914 1.63314 1.56352 1.35276 1.45805 1.03975 1.61553 1.25417 1.19103 0.91390 0.92427 0.82624 1.21143 0.91252 1.40464 1.05650 0.91874 1.24944 0.99453 0.94797 0.94733 1.69959 1.36100 1.37482 1.08540 0.86444 0.84005 0.78395 0.77883 1.20031 1.21009 1.20041 1.22988 0.90846 0.94604 0.97470 1.68160 1.05697 1.28658 1.18223 0.92547 0.92526 0.92479 0.90854 0.93102 0.92430 0.92507 0.89420 0.89503 0.80214 0.75691 0.77703 0.95297 0.95376 0.92250 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.19 37.15 0.34 -0.74 16 2 C -0.09 -0.89 2.91 -90.62 -0.26 -1.15 16 3 C -0.14 -1.44 8.91 37.16 0.33 -1.11 16 4 C -0.04 -0.43 5.12 -27.88 -0.14 -0.57 16 5 C 0.28 3.83 6.25 -157.19 -0.98 2.85 16 6 N -0.50 -7.63 10.32 -10.58 -0.11 -7.74 16 7 C 0.15 2.38 9.94 -17.00 -0.17 2.21 16 8 C 0.08 1.11 6.34 -83.39 -0.53 0.58 16 9 N -0.68 -9.39 5.37 -14.03 -0.08 -9.46 16 10 C 0.69 13.02 8.34 -86.91 -0.72 12.29 16 11 O -0.58 -13.35 14.04 5.29 0.07 -13.28 16 12 N -0.72 -14.03 5.55 -66.42 -0.37 -14.40 16 13 C 0.27 6.72 5.43 -5.20 -0.03 6.69 16 14 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 15 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -25.42 13.29 55.43 0.74 -24.68 16 18 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.11 1.33 11.26 -17.00 -0.19 1.14 16 23 N -0.49 -6.42 9.25 -10.58 -0.10 -6.51 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.68 6.65 -51.93 -0.35 0.34 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.18 3.18 6.47 -52.48 -0.34 2.84 16 34 H 0.41 3.98 8.84 -40.82 -0.36 3.61 16 35 H 0.39 6.33 8.34 -40.82 -0.34 5.99 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -31.73 332.79 -8.19 -39.92 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.57 Total: 6.60 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.77 Total: 9.28 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.09 Total: -62.80 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.73 -8.19 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348941494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.902 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds