Wall clock time and date at job start Tue Mar 31 2020 00:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 C 1.53007 * 109.46684 * 119.99865 * 2 1 3 5 5 C 1.50704 * 109.47112 * 174.99787 * 4 2 1 6 6 N 1.31794 * 119.04162 * 269.73562 * 5 4 2 7 7 C 1.32266 * 120.88807 * 179.71653 * 6 5 4 8 8 C 1.39222 * 119.01933 * 0.54265 * 7 6 5 9 9 N 1.40002 * 120.86925 * 179.71156 * 8 7 6 10 10 C 1.34779 * 120.00129 * 32.40634 * 9 8 7 11 11 O 1.21587 * 119.99992 * 5.30647 * 10 9 8 12 12 N 1.34781 * 120.00061 * 185.29445 * 10 9 8 13 13 C 1.46497 * 119.99965 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46899 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00750 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99778 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99957 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47350 * 59.99703 * 18 16 14 20 20 H 1.48498 * 109.46846 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46931 * 299.99382 * 18 16 14 22 22 C 1.39225 * 118.26271 * 359.73086 * 8 7 6 23 23 N 1.31800 * 119.03706 * 89.99686 * 5 4 2 24 24 H 1.09000 * 109.47515 * 300.00236 * 1 2 3 25 25 H 1.09003 * 109.46793 * 60.00004 * 1 2 3 26 26 H 1.08999 * 109.47227 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47515 * 239.99764 * 2 1 3 28 28 H 1.08990 * 109.47238 * 299.99432 * 3 2 1 29 29 H 1.08996 * 109.47225 * 59.99914 * 3 2 1 30 30 H 1.09004 * 109.47329 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47223 * 55.00360 * 4 2 1 32 32 H 1.08999 * 109.47026 * 295.00003 * 4 2 1 33 33 H 1.08007 * 120.48973 * 180.26903 * 7 6 5 34 34 H 0.96999 * 119.99909 * 212.41364 * 9 8 7 35 35 H 0.97001 * 119.99385 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.47076 * 300.00815 * 13 12 10 37 37 H 1.08997 * 109.46924 * 60.00691 * 13 12 10 38 38 H 0.97001 * 120.00059 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.49600 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1891 6 7 4.0847 -1.8888 0.6233 7 6 5.3987 -2.0186 0.5454 8 6 6.2088 -1.0216 1.0821 9 7 7.6041 -1.1223 1.0264 10 6 8.1942 -1.7386 -0.0169 11 8 7.5231 -2.1214 -0.9557 12 7 9.5283 -1.9302 -0.0196 13 6 10.1697 -2.6005 -1.1534 14 6 11.6543 -2.6889 -0.9104 15 1 12.0779 -2.2856 -0.0025 16 6 12.4721 -3.2836 -1.8477 17 7 11.9564 -3.7742 -2.9536 18 14 14.3123 -3.3937 -1.5461 19 1 14.5651 -4.1697 -0.3055 20 1 14.9624 -4.0731 -2.6955 21 1 14.8722 -2.0263 -1.3976 22 6 5.5951 0.0781 1.6758 23 7 4.2741 0.1355 1.7084 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6768 1.9562 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1370 33 1 5.8367 -2.8874 0.0765 34 1 8.1461 -0.7487 1.7388 35 1 10.0636 -1.6249 0.7295 36 1 9.7591 -3.6045 -1.2616 37 1 9.9835 -2.0318 -2.0644 38 1 12.5318 -4.1923 -3.6132 39 1 6.1888 0.8722 2.1038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348941494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:07 Heat of formation + Delta-G solvation = -21.637477 kcal Electronic energy + Delta-G solvation = -20696.143944 eV Core-core repulsion = 17444.454171 eV Total energy + Delta-G solvation = -3251.689773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.45044 -40.96357 -37.58909 -36.42369 -35.98491 -34.74836 -34.42310 -31.93005 -29.43454 -28.04271 -27.83870 -25.85696 -24.97955 -23.69730 -22.12137 -21.08890 -20.26046 -18.96636 -18.38029 -17.85500 -17.77325 -16.75462 -16.55330 -16.13135 -15.88146 -15.74188 -15.02651 -14.84541 -14.68612 -14.46443 -14.11171 -14.05422 -13.47159 -13.03282 -12.94672 -12.81126 -12.70133 -12.59213 -12.32134 -12.24955 -11.98477 -11.69962 -11.68524 -11.55297 -11.51604 -11.39048 -10.81024 -10.29459 -10.02271 -9.34637 -8.29200 -6.45648 -0.20128 0.01243 1.42765 1.48122 1.51611 1.57794 1.98848 2.38326 2.71194 2.98797 3.06414 3.15693 3.23746 3.53711 3.85713 3.99289 4.01636 4.07768 4.37624 4.65333 4.69940 4.79642 4.85102 4.91307 5.00306 5.03888 5.06304 5.14601 5.24223 5.28775 5.41477 5.43481 5.47741 5.50741 5.55866 5.80600 5.93709 6.04538 6.64807 7.04699 7.08511 7.23970 7.49097 8.82641 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.002799 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.139339 B =10000.806385 C =10247.401309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.041 4.041 5 C 0.283 3.717 6 N -0.517 5.517 7 C 0.126 3.874 8 C 0.064 3.936 9 N -0.657 5.657 10 C 0.692 3.308 11 O -0.626 6.626 12 N -0.709 5.709 13 C 0.284 3.716 14 C -0.556 4.556 15 H 0.087 0.913 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.262 1.262 22 C 0.134 3.866 23 N -0.494 5.494 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.431 0.569 35 H 0.410 0.590 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.269 0.731 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 10.309 13.380 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.080 4.080 5 C 0.015 3.985 6 N -0.231 5.231 7 C -0.042 4.042 8 C -0.037 4.037 9 N -0.308 5.308 10 C 0.392 3.608 11 O -0.507 6.507 12 N -0.362 5.362 13 C 0.161 3.839 14 C -0.593 4.593 15 H 0.105 0.895 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.037 4.037 23 N -0.207 5.207 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.171 0.829 34 H 0.271 0.729 35 H 0.246 0.754 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.474 9.890 12.399 23.598 hybrid contribution 2.552 -0.349 -0.079 2.577 sum -14.922 9.541 12.320 21.575 Atomic orbital electron populations 1.21769 0.92489 1.02519 1.02811 1.21041 0.97478 0.96120 0.96232 1.21804 0.99979 0.95677 1.02344 1.20573 0.83836 1.03079 1.00482 1.23651 0.99107 0.85506 0.90232 1.68270 1.12298 1.25717 1.16829 1.23269 0.88702 0.97695 0.94532 1.19398 0.84467 0.96969 1.02912 1.42173 1.03836 1.60431 1.24360 1.16248 0.82972 0.79158 0.82394 1.90897 1.64206 1.58052 1.37533 1.45299 1.04537 1.61603 1.24738 1.18501 0.91964 0.90273 0.83191 1.21564 0.91321 1.40050 1.06414 0.89527 1.26040 1.05010 0.94192 0.94276 1.70128 1.38171 1.38726 1.09857 0.85213 0.77183 0.78967 0.77889 1.18660 1.21340 1.18618 1.23641 0.90763 0.94184 0.95076 1.68318 1.06005 1.28185 1.18225 0.91078 0.92099 0.92047 0.93235 0.92533 0.91053 0.94826 0.88868 0.87586 0.82911 0.72909 0.75367 0.99082 0.99231 0.92236 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.64 2.91 -10.79 -0.03 -1.67 16 3 C -0.14 -2.59 8.91 71.98 0.64 -1.95 16 4 C -0.04 -0.78 5.12 29.85 0.15 -0.63 16 5 C 0.28 7.36 6.25 138.75 0.87 8.23 16 6 N -0.52 -16.26 10.32 -187.38 -1.93 -18.20 16 7 C 0.13 4.21 9.94 84.86 0.84 5.05 16 8 C 0.06 1.75 6.34 38.31 0.24 1.99 16 9 N -0.66 -17.27 5.37 -316.58 -1.70 -18.98 16 10 C 0.69 26.55 8.34 179.05 1.49 28.04 16 11 O -0.63 -30.29 14.04 -3.99 -0.06 -30.35 16 12 N -0.71 -27.94 5.55 -482.30 -2.68 -30.61 16 13 C 0.28 14.94 5.43 85.63 0.46 15.41 16 14 C -0.56 -28.99 9.28 25.60 0.24 -28.75 16 15 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 18 Si 0.98 41.14 29.54 68.60 2.03 43.16 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 C 0.13 2.87 11.26 84.86 0.96 3.83 16 23 N -0.49 -11.79 9.25 -187.39 -1.73 -13.53 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.03 0.76 6.65 -2.38 -0.02 0.75 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.15 5.88 6.47 -2.91 -0.02 5.86 16 34 H 0.43 7.21 8.84 -92.71 -0.82 6.39 16 35 H 0.41 12.71 8.34 -92.71 -0.77 11.94 16 36 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.21 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.34 332.79 0.68 -71.66 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.52 Total: 22.48 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 6.99 Total: 29.14 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -7.76 Total: -136.10 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.06 Total: -30.35 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -72.34 0.68 -71.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348941494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.023 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds