Wall clock time and date at job start Tue Mar 31 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46947 * 2 1 4 4 N 1.46505 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.36909 * 120.00326 * 263.58388 * 4 3 2 6 6 H 1.07997 * 120.00363 * 142.22427 * 5 4 3 7 7 C 1.39021 * 119.99973 * 322.22871 * 5 4 3 8 8 N 1.31389 * 120.00168 * 157.66345 * 7 5 4 9 9 Si 1.86802 * 119.99860 * 337.65806 * 7 5 4 10 10 H 1.48500 * 109.46852 * 95.71151 * 9 7 5 11 11 H 1.48494 * 109.47328 * 215.71306 * 9 7 5 12 12 H 1.48506 * 109.47344 * 335.71350 * 9 7 5 13 13 C 1.34780 * 119.99408 * 83.58724 * 4 3 2 14 14 O 1.21626 * 120.00249 * 359.97438 * 13 4 3 15 15 C 1.47459 * 119.99654 * 180.02562 * 13 4 3 16 16 C 1.40168 * 120.87479 * 89.71481 * 15 13 4 17 17 C 1.50693 * 120.49930 * 0.24808 * 16 15 13 18 18 N 1.31951 * 119.00020 * 180.27623 * 16 15 13 19 19 C 1.32674 * 120.90645 * 359.97438 * 18 16 15 20 20 N 1.37948 * 119.03552 * 180.02562 * 19 18 16 21 21 N 1.32673 * 121.93300 * 0.02562 * 19 18 16 22 22 C 1.31963 * 120.90151 * 359.97438 * 21 19 18 23 23 C 1.50697 * 120.49635 * 180.02562 * 22 21 19 24 24 H 1.09004 * 109.47394 * 60.00206 * 1 2 3 25 25 H 1.08997 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47216 * 299.99981 * 1 2 3 27 27 H 1.08997 * 109.47596 * 240.00366 * 2 1 3 28 28 H 1.08998 * 109.47069 * 119.99536 * 2 1 3 29 29 H 1.09000 * 109.47147 * 59.99976 * 3 2 1 30 30 H 1.08990 * 109.46942 * 300.00010 * 3 2 1 31 31 H 0.96997 * 119.99863 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46719 * 89.99884 * 17 16 15 33 33 H 1.08998 * 109.47312 * 209.99995 * 17 16 15 34 34 H 1.08998 * 109.47683 * 330.00661 * 17 16 15 35 35 H 0.96999 * 120.00102 * 179.97438 * 20 19 18 36 36 H 0.96999 * 120.00099 * 359.97153 * 20 19 18 37 37 H 1.08999 * 109.47535 * 269.97967 * 23 22 21 38 38 H 1.09006 * 109.47172 * 29.98382 * 23 22 21 39 39 H 1.09003 * 109.46994 * 149.97847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.5752 1.1791 6 1 5.0993 1.0169 1.3410 7 6 3.7121 2.4287 2.1674 8 7 4.0730 2.2519 3.4184 9 14 2.5582 3.8269 1.7169 10 1 1.1528 3.3963 1.9282 11 1 2.8493 5.0044 2.5735 12 1 2.7551 4.1914 0.2908 13 6 4.1792 1.3120 -1.1591 14 8 3.5715 1.1938 -2.2059 15 6 5.6538 1.3115 -1.1584 16 6 6.3726 0.1163 -1.0179 17 6 5.6501 -1.1978 -0.8696 18 7 7.6914 0.1593 -1.0169 19 6 8.3358 1.3118 -1.1468 20 7 9.7152 1.3119 -1.1411 21 7 7.6923 2.4641 -1.2821 22 6 6.3735 2.5067 -1.2930 23 6 5.6520 3.8207 -1.4478 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.7399 2.8471 4.1080 32 1 5.4801 -1.6321 -1.8549 33 1 6.2547 -1.8794 -0.2715 34 1 4.6927 -1.0324 -0.3755 35 1 10.2005 2.1464 -1.2355 36 1 10.1999 0.4775 -1.0426 37 1 5.4730 4.2551 -0.4643 38 1 6.2618 4.5024 -2.0407 39 1 4.6991 3.6549 -1.9506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349850420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:17 Heat of formation + Delta-G solvation = -4.655470 kcal Electronic energy + Delta-G solvation = -22774.291907 eV Core-core repulsion = 19523.338529 eV Total energy + Delta-G solvation = -3250.953378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19352 -40.43058 -37.15360 -36.22202 -35.80071 -34.69156 -33.52657 -32.12204 -30.39314 -29.01822 -27.50712 -26.63296 -24.37440 -22.85967 -22.73189 -21.17630 -19.37622 -19.22283 -18.14232 -18.06610 -17.19755 -16.74530 -16.26376 -16.11122 -15.76225 -15.40078 -14.82246 -14.74018 -14.42738 -14.32788 -14.23085 -13.90413 -13.80027 -13.53171 -13.29703 -13.17464 -13.04697 -12.72209 -12.50371 -12.45818 -12.13880 -11.87763 -11.55696 -11.46998 -11.27029 -11.08512 -10.53960 -10.21831 -9.77647 -9.16110 -8.52411 -6.12867 0.09184 0.11255 1.18828 1.31654 1.43129 1.75515 2.14833 2.17492 2.55892 2.84379 2.94917 3.05155 3.45014 3.86524 3.99151 4.13294 4.21698 4.23772 4.37839 4.43310 4.57355 4.60256 4.61416 4.63537 4.69666 4.81768 4.88717 4.97789 5.06063 5.15703 5.27645 5.31702 5.35409 5.51419 5.91025 6.03157 6.23010 6.33842 6.38207 6.93042 7.35861 7.41099 7.72062 8.61790 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.007629 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.400205 B = 3669.398150 C = 4268.356524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.096 3.904 4 N -0.455 5.455 5 C -0.331 4.331 6 H 0.068 0.932 7 C 0.035 3.965 8 N -0.893 5.893 9 Si 0.915 3.085 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.256 1.256 13 C 0.545 3.455 14 O -0.608 6.608 15 C -0.267 4.267 16 C 0.237 3.763 17 C -0.099 4.099 18 N -0.582 5.582 19 C 0.556 3.444 20 N -0.798 5.798 21 N -0.583 5.583 22 C 0.243 3.757 23 C -0.101 4.101 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.280 0.720 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.424 0.576 36 H 0.424 0.576 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -1.217 -6.287 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.027 4.027 4 N -0.174 5.174 5 C -0.459 4.459 6 H 0.085 0.915 7 C -0.170 4.170 8 N -0.529 5.529 9 Si 0.740 3.260 10 H -0.181 1.181 11 H -0.212 1.212 12 H -0.179 1.179 13 C 0.334 3.666 14 O -0.494 6.494 15 C -0.278 4.278 16 C 0.089 3.911 17 C -0.157 4.157 18 N -0.307 5.307 19 C 0.196 3.804 20 N -0.349 5.349 21 N -0.308 5.308 22 C 0.095 3.905 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.257 0.743 36 H 0.257 0.743 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.108 -1.215 -6.558 7.358 hybrid contribution -0.687 0.687 0.480 1.083 sum 2.420 -0.528 -6.078 6.564 Atomic orbital electron populations 1.21673 0.93299 1.02872 1.02062 1.21707 0.97495 0.95648 1.01620 1.21865 0.80982 0.98801 1.01021 1.43757 1.04797 1.63372 1.05451 1.18609 1.09949 1.26121 0.91202 0.91471 1.25840 0.98367 0.98578 0.94244 1.69827 1.45163 1.37357 1.00588 0.86308 0.80041 0.79963 0.79706 1.18076 1.21200 1.17934 1.17790 0.86239 0.79628 0.82967 1.90627 1.70172 1.56381 1.32198 1.20943 0.95899 0.96223 1.14742 1.21715 0.88330 0.95548 0.85518 1.20783 0.99305 0.91447 1.04122 1.67680 1.09429 1.28324 1.25286 1.19701 0.88838 0.84499 0.87315 1.41475 0.99168 1.14403 1.79814 1.67676 1.09418 1.28224 1.25472 1.21591 0.88252 0.95193 0.85493 1.20781 0.99439 0.91866 1.03710 0.92026 0.90763 0.92624 0.92428 0.92463 0.91646 0.91297 0.91056 0.88169 0.88453 0.91364 0.74340 0.74323 0.89761 0.87613 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.13 -4.56 6.21 30.60 0.19 -4.37 16 3 C 0.10 3.99 3.92 86.38 0.34 4.33 16 4 N -0.45 -21.24 2.18 -639.20 -1.39 -22.63 16 5 C -0.33 -17.09 9.07 84.09 0.76 -16.33 16 6 H 0.07 3.88 7.42 -2.91 -0.02 3.86 16 7 C 0.03 1.78 5.26 84.95 0.45 2.23 16 8 N -0.89 -48.95 13.96 21.68 0.30 -48.65 16 9 Si 0.92 39.94 25.05 68.60 1.72 41.66 16 10 H -0.26 -10.37 6.70 99.48 0.67 -9.70 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.55 25.30 4.25 86.67 0.37 25.67 16 14 O -0.61 -29.83 16.80 -4.11 -0.07 -29.90 16 15 C -0.27 -11.80 4.14 -19.91 -0.08 -11.88 16 16 C 0.24 9.65 6.71 43.01 0.29 9.94 16 17 C -0.10 -3.45 9.86 71.23 0.70 -2.74 16 18 N -0.58 -22.05 10.37 -185.16 -1.92 -23.97 16 19 C 0.56 19.71 8.65 261.56 2.26 21.97 16 20 N -0.80 -19.13 9.04 -59.85 -0.54 -19.68 16 21 N -0.58 -22.31 10.37 -185.15 -1.92 -24.23 16 22 C 0.24 10.05 6.87 43.01 0.30 10.35 16 23 C -0.10 -3.67 9.85 71.23 0.70 -2.96 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.77 3.65 -2.39 -0.01 2.76 16 30 H 0.07 2.82 7.62 -2.39 -0.02 2.80 16 31 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 33 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.07 2.61 7.17 -2.39 -0.02 2.59 16 35 H 0.42 8.12 8.94 -92.71 -0.83 7.29 16 36 H 0.42 8.08 8.94 -92.71 -0.83 7.25 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.11 3.14 8.14 -2.38 -0.02 3.13 16 39 H 0.07 2.70 7.18 -2.39 -0.02 2.68 16 Total: -1.00 -64.53 325.90 2.56 -61.97 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.61 Total: 32.46 kcal Atomic # 6 Polarization: 25.98 SS G_CDS: 6.99 Total: 32.97 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -5.47 Total: -139.16 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.07 Total: -29.90 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.72 Total: 41.66 kcal Total: -64.53 2.56 -61.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349850420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.314 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds