Wall clock time and date at job start Tue Mar 31 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46919 * 2 1 4 4 C 1.52998 * 109.47391 * 240.00215 * 2 1 3 5 5 C 1.50701 * 109.47456 * 59.99501 * 4 2 1 6 6 H 1.08002 * 119.99593 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00254 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99874 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00224 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47251 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47376 * 120.00123 * 9 7 5 12 12 H 1.48498 * 109.47413 * 240.00140 * 9 7 5 13 13 C 1.52998 * 109.47207 * 119.99815 * 2 1 3 14 14 N 1.46504 * 109.46938 * 300.00213 * 13 2 1 15 15 C 1.34781 * 119.99550 * 180.02562 * 14 13 2 16 16 O 1.21906 * 120.00317 * 359.97438 * 15 14 13 17 17 N 1.33377 * 119.99639 * 180.02562 * 15 14 13 18 18 C 1.33832 * 119.99987 * 244.79136 * 17 15 14 19 19 C 1.40914 * 120.41216 * 175.08802 * 18 17 15 20 20 C 1.36754 * 117.83173 * 180.02562 * 19 18 17 21 21 C 1.40311 * 118.48152 * 0.25296 * 20 19 18 22 22 N 1.30475 * 120.62107 * 359.45315 * 21 20 19 23 23 N 1.28416 * 122.43374 * 0.58958 * 22 21 20 24 24 H 0.96998 * 119.26928 * 179.69715 * 23 22 21 25 25 H 1.09005 * 109.47523 * 300.00278 * 1 2 3 26 26 H 1.08998 * 109.46971 * 59.99827 * 1 2 3 27 27 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46726 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46727 * 299.99724 * 3 2 1 30 30 H 1.08995 * 109.46998 * 60.00041 * 3 2 1 31 31 H 1.08998 * 109.47320 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46636 * 299.99985 * 4 2 1 33 33 H 0.97004 * 120.00439 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47290 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47129 * 60.00184 * 13 2 1 36 36 H 0.96996 * 120.00536 * 359.97438 * 14 13 2 37 37 H 1.07999 * 121.08333 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.76178 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.69191 * 179.72035 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6257 -1.5520 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 0.4246 1.5664 -4.8531 11 1 2.4036 0.8645 -6.0656 12 1 0.4226 -0.5341 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8777 -0.4907 3.6695 16 8 2.5786 -1.4818 3.7814 17 7 1.4326 0.1378 4.7585 18 6 2.2980 0.7303 5.5898 19 6 1.8325 1.4837 6.6858 20 6 2.7629 2.0669 7.5010 21 6 4.1217 1.8886 7.2002 22 7 4.4864 1.1733 6.1717 23 7 3.6383 0.6132 5.3868 24 1 3.9604 0.0949 4.6328 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 2.8595 -1.8839 -4.7336 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.7754 1.5970 6.8759 38 1 2.4586 2.6549 8.3542 39 1 4.8729 2.3442 7.8283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349893435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:23 Heat of formation + Delta-G solvation = 42.068550 kcal Electronic energy + Delta-G solvation = -21238.648012 eV Core-core repulsion = 17989.720740 eV Total energy + Delta-G solvation = -3248.927272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.09661 -39.64054 -37.27313 -35.08643 -34.49099 -33.54446 -32.09488 -30.69551 -27.13846 -26.50315 -26.42280 -25.57824 -24.40665 -22.77384 -20.70252 -19.53588 -18.92792 -17.90116 -17.19823 -16.39469 -16.17752 -15.74696 -15.68003 -15.04118 -14.52246 -14.41930 -13.94869 -13.60953 -13.19002 -13.10837 -12.74505 -12.25488 -12.06572 -11.79546 -11.53872 -11.15144 -11.14373 -11.01951 -10.84046 -10.65024 -10.61967 -10.39709 -10.23844 -9.87648 -9.51638 -9.17399 -8.92078 -8.71775 -8.36132 -8.26837 -5.99892 -4.01122 0.09576 0.94675 2.14297 2.71982 2.94369 3.30235 3.38248 3.40819 3.59494 3.89422 4.23913 4.31992 4.45525 4.58329 5.24308 5.29401 5.35704 5.47988 5.49683 5.54219 5.62829 5.76054 6.13881 6.17864 6.24840 6.33017 6.40197 6.58454 6.63997 6.78284 7.05890 7.08118 7.13068 7.41147 7.62800 7.64336 7.76296 7.88389 7.99046 8.40763 8.65010 9.03808 9.62027 11.11659 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037526 B = 0.003190 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.971868 B = 8774.461265 C = 8785.821967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.135 3.865 14 N -0.711 5.711 15 C 0.657 3.343 16 O -0.600 6.600 17 N -0.626 5.626 18 C 0.418 3.582 19 C -0.108 4.108 20 C -0.079 4.079 21 C 0.031 3.969 22 N -0.218 5.218 23 N -0.443 5.443 24 H 0.449 0.551 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.400 0.600 37 H 0.169 0.831 38 H 0.160 0.840 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 10.730 23.396 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.011 3.989 14 N -0.363 5.363 15 C 0.356 3.644 16 O -0.479 6.479 17 N -0.375 5.375 18 C 0.157 3.843 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.162 4.162 22 N -0.039 5.039 23 N -0.176 5.176 24 H 0.297 0.703 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.012 9.371 22.643 24.527 hybrid contribution -0.647 0.509 -1.215 1.467 sum 0.365 9.880 21.429 23.599 Atomic orbital electron populations 1.21758 0.95139 1.01249 1.00298 1.20918 0.95645 0.95794 0.94929 1.21758 1.00380 0.95973 1.00254 1.19093 0.96309 0.95276 0.89440 1.21220 1.31098 1.12042 0.90486 0.92183 1.25017 0.95326 0.95090 0.99107 1.69976 1.37062 1.23030 1.23336 0.86585 0.78596 0.79687 0.83415 1.19789 1.21140 1.21111 1.21631 0.98564 0.96190 0.82523 1.45885 1.53935 1.31659 1.04861 1.17384 0.78515 0.84947 0.83516 1.90984 1.40407 1.28730 1.87777 1.69138 1.30829 1.28558 1.08989 1.20431 0.80593 0.90398 0.92871 1.21345 1.02642 0.97335 0.92530 1.22261 0.92933 0.96406 0.98910 1.23475 0.96766 1.00034 0.95892 1.71089 1.24786 1.05319 1.02707 1.44378 1.03388 1.43331 1.26482 0.70287 0.95147 0.91392 0.93325 0.93469 0.91319 0.95363 0.96368 0.96285 0.93091 0.91944 0.91731 0.76403 0.81371 0.82281 0.79394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 2 C -0.07 -1.44 0.54 -154.51 -0.08 -1.52 16 3 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 4 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 5 C -0.51 -13.75 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.56 4.56 -4.04 -0.02 2.54 16 14 N -0.71 -11.97 4.96 -65.53 -0.33 -12.30 16 15 C 0.66 11.71 7.00 -88.16 -0.62 11.09 16 16 O -0.60 -12.53 16.03 5.00 0.08 -12.45 16 17 N -0.63 -9.50 10.50 -16.09 -0.17 -9.66 16 18 C 0.42 4.93 7.43 -155.89 -1.16 3.77 16 19 C -0.11 -0.77 10.12 -39.11 -0.40 -1.17 16 20 C -0.08 -0.32 10.16 -39.34 -0.40 -0.72 16 21 C 0.03 0.16 11.30 -17.35 -0.20 -0.03 16 22 N -0.22 -2.02 11.42 30.66 0.35 -1.67 16 23 N -0.44 -5.16 6.08 31.17 0.19 -4.97 16 24 H 0.45 6.04 6.73 -190.47 -1.28 4.76 16 25 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 26 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 30 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.40 6.11 6.26 -40.82 -0.26 5.86 16 37 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.16 0.00 8.06 -52.49 -0.42 -0.42 16 39 H 0.19 0.26 8.06 -52.49 -0.42 -0.17 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -34.59 324.46 -8.19 -42.78 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.18 Total: 4.83 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.74 Total: -1.87 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.78 Total: -54.57 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.59 -8.19 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349893435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.850 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds