Wall clock time and date at job start Tue Mar 31 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46919 * 2 1 4 4 C 1.52998 * 109.47391 * 240.00215 * 2 1 3 5 5 C 1.50701 * 109.47456 * 59.99501 * 4 2 1 6 6 H 1.08002 * 119.99593 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00254 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99874 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00224 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47251 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47376 * 120.00123 * 9 7 5 12 12 H 1.48498 * 109.47413 * 240.00140 * 9 7 5 13 13 C 1.52998 * 109.47207 * 119.99815 * 2 1 3 14 14 N 1.46504 * 109.46938 * 300.00213 * 13 2 1 15 15 C 1.34781 * 119.99550 * 180.02562 * 14 13 2 16 16 O 1.21906 * 120.00317 * 359.97438 * 15 14 13 17 17 N 1.33377 * 119.99639 * 180.02562 * 15 14 13 18 18 C 1.33832 * 119.99987 * 244.79136 * 17 15 14 19 19 C 1.40914 * 120.41216 * 175.08802 * 18 17 15 20 20 C 1.36754 * 117.83173 * 180.02562 * 19 18 17 21 21 C 1.40311 * 118.48152 * 0.25296 * 20 19 18 22 22 N 1.30475 * 120.62107 * 359.45315 * 21 20 19 23 23 N 1.28416 * 122.43374 * 0.58958 * 22 21 20 24 24 H 0.96998 * 119.26928 * 179.69715 * 23 22 21 25 25 H 1.09005 * 109.47523 * 300.00278 * 1 2 3 26 26 H 1.08998 * 109.46971 * 59.99827 * 1 2 3 27 27 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46726 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46727 * 299.99724 * 3 2 1 30 30 H 1.08995 * 109.46998 * 60.00041 * 3 2 1 31 31 H 1.08998 * 109.47320 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46636 * 299.99985 * 4 2 1 33 33 H 0.97004 * 120.00439 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47290 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47129 * 60.00184 * 13 2 1 36 36 H 0.96996 * 120.00536 * 359.97438 * 14 13 2 37 37 H 1.07999 * 121.08333 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.76178 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.69191 * 179.72035 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8704 -0.4822 -3.7320 8 7 2.6257 -1.5520 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 0.4246 1.5664 -4.8531 11 1 2.4036 0.8645 -6.0656 12 1 0.4226 -0.5341 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8777 -0.4907 3.6695 16 8 2.5786 -1.4818 3.7814 17 7 1.4326 0.1378 4.7585 18 6 2.2980 0.7303 5.5898 19 6 1.8325 1.4837 6.6858 20 6 2.7629 2.0669 7.5010 21 6 4.1217 1.8886 7.2002 22 7 4.4864 1.1733 6.1717 23 7 3.6383 0.6132 5.3868 24 1 3.9604 0.0949 4.6328 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7489 -1.2492 33 1 2.8595 -1.8839 -4.7336 34 1 3.1301 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9942 0.7583 2.3564 37 1 0.7754 1.5970 6.8759 38 1 2.4586 2.6549 8.3542 39 1 4.8729 2.3442 7.8283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349893435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:20 Heat of formation + Delta-G solvation = 15.729839 kcal Electronic energy + Delta-G solvation = -21239.790145 eV Core-core repulsion = 17989.720740 eV Total energy + Delta-G solvation = -3250.069404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -42.84781 -40.90076 -38.84271 -36.05867 -35.28531 -35.03938 -33.94882 -31.57967 -29.12059 -28.03603 -27.77659 -26.36851 -25.40526 -24.51924 -21.90044 -20.48798 -20.00410 -19.21621 -18.41080 -17.98601 -17.47400 -16.72362 -16.49464 -16.36175 -16.14371 -15.74332 -15.15876 -14.87699 -14.66381 -14.40360 -13.99110 -13.90247 -13.64712 -12.93896 -12.77551 -12.69721 -12.64040 -12.43918 -12.39777 -12.25857 -11.99180 -11.65499 -11.62625 -11.60628 -11.08275 -10.90856 -10.56510 -10.54425 -10.12853 -9.15638 -8.16049 -6.24276 -0.49239 0.26650 1.30362 1.40672 1.41426 1.53651 1.66160 2.11191 2.42340 2.51171 3.18319 3.29487 3.59821 3.85249 3.88856 3.99845 4.10537 4.15539 4.50370 4.62130 4.64415 4.69503 4.81973 4.88903 4.94661 5.02992 5.04640 5.05686 5.31346 5.40724 5.43443 5.46010 5.49605 5.52693 5.74067 5.86582 6.27253 6.38333 6.59840 6.90436 7.01393 7.41055 7.43666 8.96861 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037526 B = 0.003190 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.971868 B = 8774.461265 C = 8785.821967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.119 4.119 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.257 1.257 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.149 3.851 14 N -0.703 5.703 15 C 0.661 3.339 16 O -0.645 6.645 17 N -0.666 5.666 18 C 0.414 3.586 19 C -0.129 4.129 20 C -0.039 4.039 21 C 0.055 3.945 22 N -0.262 5.262 23 N -0.454 5.454 24 H 0.436 0.564 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.062 0.938 31 H -0.012 1.012 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.409 0.591 37 H 0.188 0.812 38 H 0.217 0.783 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 14.331 26.259 29.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.786 3.214 10 H -0.180 1.180 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.024 3.976 14 N -0.356 5.356 15 C 0.362 3.638 16 O -0.528 6.528 17 N -0.421 5.421 18 C 0.157 3.843 19 C -0.159 4.159 20 C -0.065 4.065 21 C -0.137 4.137 22 N -0.082 5.082 23 N -0.182 5.182 24 H 0.280 0.720 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.247 0.753 37 H 0.205 0.795 38 H 0.234 0.766 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.275 13.047 25.580 28.716 hybrid contribution -0.266 -0.494 -1.781 1.867 sum 0.009 12.553 23.799 26.907 Atomic orbital electron populations 1.21680 0.93741 1.00881 1.01487 1.20724 0.96651 0.96408 0.92691 1.21665 0.99959 0.94502 1.01464 1.18957 0.94364 0.94139 0.92136 1.21602 1.30475 1.12101 0.90991 0.90888 1.25968 0.95621 0.95868 1.02782 1.70133 1.38812 1.24952 1.24102 0.85453 0.78074 0.78797 0.79064 1.18017 1.20896 1.21021 1.21228 0.97705 0.95202 0.83450 1.45662 1.54210 1.31644 1.04108 1.17686 0.77371 0.84529 0.84249 1.90930 1.42739 1.30818 1.88304 1.69028 1.30946 1.32715 1.09385 1.21121 0.80454 0.89642 0.93076 1.21721 1.04514 0.97774 0.91843 1.22919 0.91372 0.93647 0.98554 1.24567 0.98848 0.96484 0.93791 1.71224 1.24711 1.07734 1.04519 1.44395 1.03658 1.43462 1.26652 0.71953 0.91873 0.92109 0.94546 0.94173 0.92155 0.91924 0.99358 0.99655 0.93117 0.93220 0.94029 0.75304 0.79464 0.76649 0.74812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.05 71.98 0.58 -3.91 16 2 C -0.06 -2.62 0.54 -52.18 -0.03 -2.65 16 3 C -0.12 -4.26 8.05 71.99 0.58 -3.68 16 4 C 0.04 2.20 4.04 29.85 0.12 2.32 16 5 C -0.51 -28.22 7.65 25.60 0.20 -28.02 16 6 H 0.07 3.76 5.68 -2.91 -0.02 3.74 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.15 5.98 4.56 86.38 0.39 6.38 16 14 N -0.70 -24.25 4.96 -479.35 -2.38 -26.63 16 15 C 0.66 24.55 7.00 179.49 1.26 25.80 16 16 O -0.65 -28.69 16.03 -5.01 -0.08 -28.77 16 17 N -0.67 -20.47 10.50 -323.73 -3.40 -23.87 16 18 C 0.41 9.44 7.43 134.04 1.00 10.44 16 19 C -0.13 -1.42 10.12 22.58 0.23 -1.19 16 20 C -0.04 -0.09 10.16 22.43 0.23 0.14 16 21 C 0.05 0.31 11.30 85.40 0.96 1.28 16 22 N -0.26 -4.38 11.42 -56.92 -0.65 -5.03 16 23 N -0.45 -10.55 6.08 -55.29 -0.34 -10.89 16 24 H 0.44 12.48 6.73 -220.02 -1.48 11.00 16 25 H 0.06 1.93 6.86 -2.38 -0.02 1.91 16 26 H 0.06 2.34 6.62 -2.39 -0.02 2.33 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.27 6.62 -2.39 -0.02 2.25 16 30 H 0.06 1.81 6.86 -2.39 -0.02 1.80 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 32 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.41 12.24 6.26 -92.71 -0.58 11.66 16 37 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.22 -1.79 8.06 -2.91 -0.02 -1.82 16 39 H 0.24 -0.91 8.06 -2.91 -0.02 -0.93 16 Total: -1.00 -82.07 324.46 0.46 -81.61 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.98 Total: 17.99 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.98 Total: 7.05 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.48 Total: -124.21 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.08 Total: -28.77 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -82.07 0.46 -81.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349893435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.342 kcal (2) G-P(sol) polarization free energy of solvation -82.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds