Wall clock time and date at job start Tue Mar 31 2020 00:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47043 * 239.99825 * 2 1 3 5 5 C 1.50693 * 109.47200 * 60.00094 * 4 2 1 6 6 H 1.08007 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00250 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46848 * 60.00550 * 9 7 5 11 11 H 1.48505 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47624 * 300.00283 * 9 7 5 13 13 C 1.53004 * 109.47136 * 119.99745 * 2 1 3 14 14 N 1.46498 * 109.47427 * 300.00146 * 13 2 1 15 15 C 1.34775 * 120.00277 * 180.02562 * 14 13 2 16 16 O 1.21585 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00060 * 180.02562 * 15 14 13 18 18 C 1.39992 * 120.00092 * 184.67236 * 17 15 14 19 19 C 1.39228 * 120.87354 * 145.06558 * 18 17 15 20 20 N 1.32263 * 119.01809 * 179.72705 * 19 18 17 21 21 C 1.31792 * 120.89356 * 0.25958 * 20 19 18 22 22 N 1.31798 * 121.92079 * 359.97438 * 21 20 19 23 23 C 1.32265 * 120.89171 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47403 * 299.99985 * 1 2 3 25 25 H 1.08995 * 109.47079 * 59.99907 * 1 2 3 26 26 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46970 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46558 * 300.00040 * 3 2 1 29 29 H 1.09001 * 109.46955 * 59.99740 * 3 2 1 30 30 H 1.09006 * 109.46990 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47156 * 299.99763 * 4 2 1 32 32 H 0.96997 * 119.99862 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47264 * 179.97438 * 13 2 1 34 34 H 1.09000 * 109.47114 * 59.99829 * 13 2 1 35 35 H 0.97004 * 119.99758 * 359.97438 * 14 13 2 36 36 H 0.97007 * 119.99852 * 4.66871 * 17 15 14 37 37 H 1.08001 * 120.48778 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.04109 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.49105 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8525 9 14 1.2479 0.3985 -5.2571 10 1 1.7420 1.7989 -5.2571 11 1 1.7430 -0.3016 -6.4696 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8777 -0.4907 3.6696 16 8 2.5767 -1.4793 3.7812 17 7 1.4280 0.1443 4.7700 18 6 1.8453 -0.2738 6.0392 19 6 2.0425 0.6461 7.0655 20 7 2.4319 0.2101 8.2519 21 6 2.6375 -1.0738 8.4669 22 7 2.4665 -1.9751 7.5206 23 6 2.0784 -1.6201 6.3070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8615 -1.8824 -4.7335 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2494 35 1 0.9943 0.7583 2.3564 36 1 0.8152 0.8912 4.6826 37 1 1.8753 1.6996 6.8966 38 1 2.9555 -1.3969 9.4472 39 1 1.9398 -2.3641 5.5365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351147522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:39 Heat of formation + Delta-G solvation = 9.326734 kcal Electronic energy + Delta-G solvation = -21058.244879 eV Core-core repulsion = 17807.897815 eV Total energy + Delta-G solvation = -3250.347064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50295 -40.02491 -37.49758 -35.37235 -33.98828 -33.77626 -32.22512 -30.40418 -27.19407 -26.60770 -26.34842 -24.94545 -24.20226 -22.83225 -21.11906 -19.26609 -18.39522 -17.81115 -17.46664 -17.14003 -16.34573 -15.67015 -15.11053 -14.86565 -14.51049 -14.25346 -13.93671 -13.84927 -13.73953 -13.18945 -12.85503 -12.37848 -12.11424 -11.73666 -11.41260 -11.17551 -11.07182 -11.05629 -10.92694 -10.70174 -10.49767 -10.35539 -10.33366 -9.96727 -9.49750 -9.28765 -9.06911 -9.00972 -8.60652 -8.40592 -6.04691 -4.06536 0.62703 0.84935 2.34593 2.96959 3.28373 3.34383 3.35039 3.59310 3.93825 3.99570 4.06620 4.30337 4.41028 4.67004 5.06199 5.30642 5.35159 5.52346 5.59618 5.64275 5.78141 6.06013 6.07666 6.12654 6.28841 6.29880 6.39792 6.54074 6.58157 6.67002 6.74494 6.96498 6.98948 7.03609 7.57413 7.69208 7.76067 7.85805 7.93220 8.32999 8.37134 8.97909 9.56906 11.06677 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053026 B = 0.002932 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.915235 B = 9548.538310 C = 9821.648340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.144 3.856 14 N -0.725 5.725 15 C 0.699 3.301 16 O -0.575 6.575 17 N -0.681 5.681 18 C 0.072 3.928 19 C 0.118 3.882 20 N -0.503 5.503 21 C 0.264 3.736 22 N -0.501 5.501 23 C 0.149 3.851 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.410 0.590 37 H 0.169 0.831 38 H 0.196 0.804 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 5.909 19.042 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.021 3.979 14 N -0.380 5.380 15 C 0.399 3.601 16 O -0.452 6.452 17 N -0.330 5.330 18 C -0.029 4.029 19 C -0.052 4.052 20 N -0.216 5.216 21 C -0.024 4.024 22 N -0.214 5.214 23 C -0.020 4.020 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.246 0.754 37 H 0.186 0.814 38 H 0.213 0.787 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.269 4.583 19.782 20.567 hybrid contribution -1.078 1.501 -1.907 2.655 sum -4.347 6.084 17.875 19.376 Atomic orbital electron populations 1.21766 0.95186 1.01252 1.00223 1.20934 0.95536 0.95911 0.94909 1.21766 1.00627 0.95822 1.00220 1.19085 0.96424 0.95257 0.89329 1.21122 1.31416 1.12144 0.90497 0.92312 1.25010 0.95262 0.95065 0.99098 1.69949 1.36759 1.22943 1.23644 0.86706 0.79140 0.79760 0.82662 1.20322 1.21367 1.20322 1.21634 0.98991 0.95826 0.81467 1.45404 1.55362 1.32979 1.04210 1.16011 0.80448 0.83095 0.80517 1.90936 1.42231 1.26629 1.85382 1.42494 1.50158 1.37580 1.02769 1.19371 1.01418 0.95597 0.86547 1.23071 0.94233 0.99853 0.88019 1.68357 1.12658 1.18623 1.21971 1.24905 0.94048 0.84485 0.98969 1.68499 1.12547 1.39307 1.01073 1.23696 0.90898 0.93854 0.93561 0.95365 0.91339 0.93258 0.93286 0.91335 0.95361 0.96268 0.96244 0.92911 0.91573 0.91510 0.76717 0.75360 0.81424 0.78731 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.05 37.16 0.30 -1.74 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.05 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.17 7.65 -34.45 -0.26 -13.43 16 6 H 0.06 1.44 5.68 -52.48 -0.30 1.14 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.14 2.31 4.56 -4.04 -0.02 2.30 16 14 N -0.73 -9.06 4.96 -65.23 -0.32 -9.38 16 15 C 0.70 9.21 8.43 -86.92 -0.73 8.48 16 16 O -0.58 -9.86 13.83 5.29 0.07 -9.79 16 17 N -0.68 -6.35 5.37 -14.04 -0.08 -6.42 16 18 C 0.07 0.75 6.35 -83.39 -0.53 0.23 16 19 C 0.12 1.06 11.26 -17.00 -0.19 0.87 16 20 N -0.50 -5.21 10.43 -14.44 -0.15 -5.36 16 21 C 0.26 2.70 12.28 -92.15 -1.13 1.57 16 22 N -0.50 -6.14 10.43 -14.44 -0.15 -6.29 16 23 C 0.15 1.87 9.98 -17.00 -0.17 1.70 16 24 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 25 H 0.07 1.21 6.62 -51.93 -0.34 0.86 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 29 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 3.93 6.18 -40.82 -0.25 3.68 16 36 H 0.41 2.30 8.84 -40.82 -0.36 1.94 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.20 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.18 2.52 6.31 -52.49 -0.33 2.19 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -31.68 323.06 -7.93 -39.62 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.16 Total: 3.14 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.73 Total: -0.94 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.04 Total: -52.59 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.68 -7.93 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351147522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.943 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds