Wall clock time and date at job start Tue Mar 31 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47043 * 239.99825 * 2 1 3 5 5 C 1.50693 * 109.47200 * 60.00094 * 4 2 1 6 6 H 1.08007 * 119.99905 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00250 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46848 * 60.00550 * 9 7 5 11 11 H 1.48505 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47624 * 300.00283 * 9 7 5 13 13 C 1.53004 * 109.47136 * 119.99745 * 2 1 3 14 14 N 1.46498 * 109.47427 * 300.00146 * 13 2 1 15 15 C 1.34775 * 120.00277 * 180.02562 * 14 13 2 16 16 O 1.21585 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00060 * 180.02562 * 15 14 13 18 18 C 1.39992 * 120.00092 * 184.67236 * 17 15 14 19 19 C 1.39228 * 120.87354 * 145.06558 * 18 17 15 20 20 N 1.32263 * 119.01809 * 179.72705 * 19 18 17 21 21 C 1.31792 * 120.89356 * 0.25958 * 20 19 18 22 22 N 1.31798 * 121.92079 * 359.97438 * 21 20 19 23 23 C 1.32265 * 120.89171 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47403 * 299.99985 * 1 2 3 25 25 H 1.08995 * 109.47079 * 59.99907 * 1 2 3 26 26 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46970 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46558 * 300.00040 * 3 2 1 29 29 H 1.09001 * 109.46955 * 59.99740 * 3 2 1 30 30 H 1.09006 * 109.46990 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47156 * 299.99763 * 4 2 1 32 32 H 0.96997 * 119.99862 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47264 * 179.97438 * 13 2 1 34 34 H 1.09000 * 109.47114 * 59.99829 * 13 2 1 35 35 H 0.97004 * 119.99758 * 359.97438 * 14 13 2 36 36 H 0.97007 * 119.99852 * 4.66871 * 17 15 14 37 37 H 1.08001 * 120.48778 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.04109 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.49105 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8525 9 14 1.2479 0.3985 -5.2571 10 1 1.7420 1.7989 -5.2571 11 1 1.7430 -0.3016 -6.4696 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8777 -0.4907 3.6696 16 8 2.5767 -1.4793 3.7812 17 7 1.4280 0.1443 4.7700 18 6 1.8453 -0.2738 6.0392 19 6 2.0425 0.6461 7.0655 20 7 2.4319 0.2101 8.2519 21 6 2.6375 -1.0738 8.4669 22 7 2.4665 -1.9751 7.5206 23 6 2.0784 -1.6201 6.3070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8615 -1.8824 -4.7335 33 1 3.1300 -0.7216 1.2491 34 1 1.6767 -1.7489 1.2494 35 1 0.9943 0.7583 2.3564 36 1 0.8152 0.8912 4.6826 37 1 1.8753 1.6996 6.8966 38 1 2.9555 -1.3969 9.4472 39 1 1.9398 -2.3641 5.5365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351147522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:38 Heat of formation + Delta-G solvation = -12.491489 kcal Electronic energy + Delta-G solvation = -21059.190988 eV Core-core repulsion = 17807.897815 eV Total energy + Delta-G solvation = -3251.293173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36576 -41.05340 -38.88288 -36.35739 -35.35753 -34.70333 -34.00038 -31.31422 -29.05490 -27.93224 -27.62020 -25.80353 -25.33933 -24.40743 -22.20096 -20.38281 -19.60135 -18.59056 -18.50621 -18.29506 -18.06809 -16.77317 -16.54558 -16.10224 -15.82614 -15.43648 -15.21726 -14.70986 -14.65824 -14.58635 -14.33865 -13.91408 -13.85110 -12.84969 -12.74806 -12.59422 -12.55706 -12.30290 -12.22093 -12.20229 -11.99458 -11.91431 -11.51783 -11.49499 -10.98471 -10.85732 -10.49340 -10.34536 -10.19220 -9.47629 -8.12860 -6.20491 -0.17376 0.02887 1.37721 1.44040 1.45263 1.52538 1.93593 2.45090 2.78947 3.05822 3.21927 3.25214 3.28793 3.53148 3.87299 3.97693 4.10802 4.24227 4.35158 4.69115 4.74708 4.77909 4.79907 4.99033 4.99435 5.11084 5.15582 5.36607 5.46526 5.48213 5.53822 5.56147 5.58821 5.78023 5.82916 5.91863 5.93452 6.32039 6.87679 6.95352 7.06024 7.35571 7.47432 8.99436 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053026 B = 0.002932 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.915235 B = 9548.538310 C = 9821.648340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.159 3.841 14 N -0.711 5.711 15 C 0.700 3.300 16 O -0.618 6.618 17 N -0.657 5.657 18 C 0.064 3.936 19 C 0.135 3.865 20 N -0.512 5.512 21 C 0.263 3.737 22 N -0.525 5.525 23 C 0.127 3.873 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.073 0.927 30 H -0.014 1.014 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.415 0.585 36 H 0.432 0.568 37 H 0.209 0.791 38 H 0.224 0.776 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 8.985 20.611 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.035 3.965 14 N -0.366 5.366 15 C 0.400 3.600 16 O -0.498 6.498 17 N -0.308 5.308 18 C -0.037 4.037 19 C -0.035 4.035 20 N -0.225 5.225 21 C -0.025 4.025 22 N -0.239 5.239 23 C -0.041 4.041 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.253 0.747 36 H 0.273 0.727 37 H 0.225 0.775 38 H 0.240 0.760 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.886 7.719 21.380 23.250 hybrid contribution -0.565 0.527 -2.281 2.408 sum -5.451 8.246 19.099 21.506 Atomic orbital electron populations 1.21705 0.93420 1.01038 1.01776 1.20709 0.96804 0.96322 0.92556 1.21705 0.99898 0.94558 1.01781 1.18975 0.94319 0.94269 0.92326 1.21573 1.30397 1.12090 0.91048 0.90827 1.25937 0.95703 0.95861 1.02713 1.70113 1.38806 1.24995 1.24118 0.85624 0.78974 0.78771 0.78418 1.19133 1.21911 1.19130 1.21149 0.97768 0.95185 0.82434 1.44967 1.55479 1.33214 1.02976 1.16086 0.80020 0.82677 0.81206 1.90931 1.44150 1.28663 1.86035 1.42105 1.49865 1.37524 1.01290 1.19374 1.02088 0.95071 0.87161 1.23675 0.91826 1.01225 0.86749 1.68479 1.13052 1.18496 1.22464 1.25499 0.92979 0.84414 0.99560 1.68478 1.13590 1.40410 1.01419 1.23509 0.92257 0.94755 0.93584 0.90812 0.92678 0.94440 0.94530 0.92666 0.90806 0.99577 0.99500 0.93221 0.93481 0.93264 0.74654 0.72723 0.77457 0.75975 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 8.05 71.98 0.58 -3.11 16 2 C -0.06 -2.19 0.54 -52.18 -0.03 -2.22 16 3 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 4 C 0.04 1.89 4.04 29.85 0.12 2.01 16 5 C -0.51 -26.60 7.65 25.60 0.20 -26.40 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -56.35 13.29 21.45 0.28 -56.06 16 9 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 C 0.16 5.14 4.56 86.38 0.39 5.53 16 14 N -0.71 -16.20 4.96 -478.54 -2.37 -18.58 16 15 C 0.70 17.44 8.43 179.05 1.51 18.94 16 16 O -0.62 -21.47 13.83 -3.98 -0.06 -21.53 16 17 N -0.66 -10.44 5.37 -316.59 -1.70 -12.14 16 18 C 0.06 1.22 6.35 38.31 0.24 1.46 16 19 C 0.13 1.99 11.26 84.87 0.96 2.94 16 20 N -0.51 -9.20 10.43 -199.58 -2.08 -11.28 16 21 C 0.26 4.94 12.28 180.88 2.22 7.16 16 22 N -0.52 -12.68 10.43 -199.58 -2.08 -14.77 16 23 C 0.13 3.17 9.98 84.87 0.85 4.02 16 24 H 0.07 1.55 6.86 -2.39 -0.02 1.53 16 25 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 29 H 0.07 1.56 6.86 -2.39 -0.02 1.54 16 30 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.41 6.43 6.18 -92.71 -0.57 5.86 16 36 H 0.43 2.98 8.84 -92.70 -0.82 2.16 16 37 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.22 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.16 4.69 6.31 -2.91 -0.02 4.67 16 Total: -1.00 -72.79 323.06 1.79 -71.00 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -0.31 Total: 11.29 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 8.08 Total: 7.39 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -7.95 Total: -112.83 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.06 Total: -21.53 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.79 1.79 -71.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351147522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.507 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds