Wall clock time and date at job start Tue Mar 31 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 H 1.09005 * 109.47207 * 54.99829 * 3 2 1 5 5 C 1.50703 * 109.47415 * 174.99832 * 3 2 1 6 6 H 1.07998 * 119.99610 * 119.99566 * 5 3 2 7 7 C 1.37875 * 119.99896 * 300.00599 * 5 3 2 8 8 N 1.31515 * 119.99569 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00186 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46928 * 90.00575 * 9 7 5 11 11 H 1.48498 * 109.47242 * 210.00828 * 9 7 5 12 12 H 1.48503 * 109.47063 * 330.00577 * 9 7 5 13 13 N 1.46506 * 109.47121 * 295.00221 * 3 2 1 14 14 C 1.34771 * 120.00162 * 84.99752 * 13 3 2 15 15 O 1.21922 * 120.00158 * 359.97438 * 14 13 3 16 16 N 1.33374 * 119.99830 * 180.02562 * 14 13 3 17 17 C 1.33829 * 119.99898 * 235.38043 * 16 14 13 18 18 C 1.40917 * 120.41468 * 185.00808 * 17 16 14 19 19 C 1.36751 * 117.83739 * 179.77999 * 18 17 16 20 20 C 1.50697 * 120.76049 * 180.23541 * 19 18 17 21 21 C 1.40313 * 118.47722 * 0.47540 * 19 18 17 22 22 C 1.50695 * 119.68324 * 179.74166 * 21 19 18 23 23 N 1.30465 * 120.62342 * 359.75752 * 21 19 18 24 24 N 1.28413 * 122.43883 * 0.02562 * 23 21 19 25 25 H 0.97000 * 119.28074 * 179.97438 * 24 23 21 26 26 H 1.09003 * 109.47414 * 299.99927 * 1 2 3 27 27 H 1.09004 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47374 * 60.00115 * 1 2 3 29 29 H 1.09003 * 109.47137 * 119.99423 * 2 1 3 30 30 H 1.08993 * 109.47425 * 240.00080 * 2 1 3 31 31 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99418 * 265.00456 * 13 3 2 33 33 H 1.08008 * 121.07757 * 0.02562 * 18 17 16 34 34 H 1.09003 * 109.47165 * 270.24397 * 20 19 18 35 35 H 1.08997 * 109.47324 * 30.24616 * 20 19 18 36 36 H 1.09005 * 109.46922 * 150.24163 * 20 19 18 37 37 H 1.09005 * 109.47261 * 270.01725 * 22 21 19 38 38 H 1.08999 * 109.47674 * 30.01920 * 22 21 19 39 39 H 1.09005 * 109.46979 * 150.02179 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8798 1.3358 9 14 3.0963 0.1100 2.5707 10 1 2.8747 -1.3261 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8092 2.6394 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3439 2.6317 -0.4295 16 7 0.0820 3.2602 -2.5068 17 6 -0.3274 4.5343 -2.4969 18 6 -0.8019 5.1403 -3.6774 19 6 -1.2112 6.4432 -3.6063 20 6 -1.7352 7.1542 -4.8273 21 6 -1.1272 7.1045 -2.3716 22 6 -1.5653 8.5423 -2.2637 23 7 -0.6731 6.4863 -1.3162 24 7 -0.2850 5.2627 -1.3484 25 1 0.0451 4.8481 -0.5359 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 5.8770 0.4819 2.1127 32 1 2.2718 2.1231 -1.9978 33 1 -0.8447 4.5923 -4.6071 34 1 -0.9084 7.6336 -5.3514 35 1 -2.2159 6.4337 -5.4890 36 1 -2.4604 7.9096 -4.5246 37 1 -0.7177 9.1967 -2.4677 38 1 -2.3566 8.7364 -2.9878 39 1 -1.9384 8.7339 -1.2576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354777165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:50 Heat of formation + Delta-G solvation = 51.031243 kcal Electronic energy + Delta-G solvation = -21656.763806 eV Core-core repulsion = 18408.225185 eV Total energy + Delta-G solvation = -3248.538621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91900 -39.31368 -36.22598 -35.47201 -34.55673 -32.39961 -31.93225 -31.00172 -29.21125 -28.09906 -27.16799 -23.82534 -23.24659 -22.49092 -20.83551 -19.61180 -19.13691 -18.47788 -16.79364 -16.18709 -16.12279 -15.57462 -15.14441 -14.68730 -14.30634 -13.90203 -13.85816 -13.55017 -13.45253 -13.22315 -13.10612 -12.64111 -12.45076 -12.04638 -11.90138 -11.79789 -11.35014 -11.08030 -11.00253 -10.85201 -10.58807 -10.26448 -10.18768 -9.88866 -9.43213 -9.20598 -8.93774 -8.73874 -8.09096 -7.81247 -6.19821 -4.22177 0.34702 1.20052 2.44537 2.95697 3.25286 3.36083 3.41707 3.46781 3.96528 4.03740 4.32813 4.34998 4.37189 4.60226 5.03721 5.11650 5.13782 5.23532 5.29333 5.38175 5.51746 5.56203 5.76261 5.87308 5.91383 6.05594 6.09837 6.24114 6.52307 6.74568 6.76000 6.91022 7.06491 7.33000 7.34503 7.53800 7.81113 7.95228 8.22475 8.62047 8.78851 9.19770 9.42488 10.92252 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.004119 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.008396 B = 6795.856509 C = 7038.667690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.047 0.953 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.689 5.689 14 C 0.652 3.348 15 O -0.607 6.607 16 N -0.626 5.626 17 C 0.419 3.581 18 C -0.114 4.114 19 C -0.046 4.046 20 C -0.117 4.117 21 C 0.056 3.944 22 C -0.089 4.089 23 N -0.217 5.217 24 N -0.439 5.439 25 H 0.450 0.550 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.397 0.603 33 H 0.167 0.833 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 15.125 -11.852 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.065 0.935 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.338 5.338 14 C 0.351 3.649 15 O -0.489 6.489 16 N -0.375 5.375 17 C 0.158 3.842 18 C -0.144 4.144 19 C -0.054 4.054 20 C -0.174 4.174 21 C -0.117 4.117 22 C -0.147 4.147 23 N -0.039 5.039 24 N -0.172 5.172 25 H 0.299 0.701 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.184 0.816 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.303 14.403 -10.561 22.882 hybrid contribution 0.075 -1.040 0.613 1.210 sum -14.228 13.363 -9.948 21.908 Atomic orbital electron populations 1.21854 0.96847 0.98852 1.02380 1.22282 0.94488 0.99916 1.00998 1.19138 0.95482 0.88569 0.82290 0.93512 1.21048 0.88563 1.39827 1.07832 0.90225 1.24819 0.94878 0.95090 0.97658 1.69872 1.08661 1.44554 1.29819 0.86890 0.80900 0.80077 0.80791 1.20166 1.22154 1.18521 1.45789 1.13122 1.56990 1.17930 1.17315 0.83123 0.81463 0.82989 1.90957 1.51348 1.66116 1.40432 1.69196 1.33000 1.06795 1.28494 1.20381 0.88514 0.88528 0.86783 1.21126 1.01528 0.94363 0.97355 1.20789 0.94615 0.93759 0.96256 1.20919 1.01778 1.00822 0.93907 1.21696 1.02985 0.98576 0.88487 1.20586 1.01933 0.88074 1.04140 1.70884 1.07646 0.96198 1.29204 1.44270 1.52661 1.06994 1.13251 0.70141 0.93049 0.95118 0.92714 0.92861 0.92281 0.92283 0.76950 0.81598 0.89570 0.90271 0.90021 0.90060 0.89804 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.15 0.32 -2.85 16 2 C -0.14 -3.31 5.11 -26.73 -0.14 -3.45 16 3 C 0.25 6.29 1.83 -69.08 -0.13 6.17 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.93 16 5 C -0.53 -15.03 9.31 -34.44 -0.32 -15.35 16 6 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 9 Si 0.88 22.39 24.41 -169.99 -4.15 18.24 16 10 H -0.27 -6.77 6.83 56.52 0.39 -6.39 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 13 N -0.69 -15.47 5.03 -60.11 -0.30 -15.77 16 14 C 0.65 14.14 5.68 -88.17 -0.50 13.64 16 15 O -0.61 -14.47 12.96 4.99 0.06 -14.41 16 16 N -0.63 -11.71 10.50 -16.09 -0.17 -11.88 16 17 C 0.42 6.50 7.37 -155.88 -1.15 5.35 16 18 C -0.11 -1.25 9.81 -39.11 -0.38 -1.63 16 19 C -0.05 -0.38 5.91 -104.38 -0.62 -1.00 16 20 C -0.12 -0.47 9.66 36.00 0.35 -0.13 16 21 C 0.06 0.54 6.87 -82.40 -0.57 -0.03 16 22 C -0.09 -0.48 9.80 36.00 0.35 -0.13 16 23 N -0.22 -2.83 11.33 33.70 0.38 -2.44 16 24 N -0.44 -6.79 6.01 31.17 0.19 -6.60 16 25 H 0.45 7.83 6.75 -190.47 -1.29 6.55 16 26 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.25 5.64 -51.93 -0.29 0.96 16 29 H 0.05 1.31 3.22 -51.93 -0.17 1.15 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.40 8.38 8.64 -40.82 -0.35 8.03 16 33 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 36 H 0.08 0.20 6.06 -51.93 -0.31 -0.11 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.25 6.04 -51.93 -0.31 -0.06 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -34.49 313.96 -7.40 -41.89 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.04 Total: 9.66 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.88 Total: 2.78 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.87 Total: -62.89 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.06 Total: -14.41 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.15 Total: 18.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.49 -7.40 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354777165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.924 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds