Wall clock time and date at job start Tue Mar 31 2020 01:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 H 1.09005 * 109.47207 * 54.99829 * 3 2 1 5 5 C 1.50703 * 109.47415 * 174.99832 * 3 2 1 6 6 H 1.07998 * 119.99610 * 119.99566 * 5 3 2 7 7 C 1.37875 * 119.99896 * 300.00599 * 5 3 2 8 8 N 1.31515 * 119.99569 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00186 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46928 * 90.00575 * 9 7 5 11 11 H 1.48498 * 109.47242 * 210.00828 * 9 7 5 12 12 H 1.48503 * 109.47063 * 330.00577 * 9 7 5 13 13 N 1.46506 * 109.47121 * 295.00221 * 3 2 1 14 14 C 1.34771 * 120.00162 * 84.99752 * 13 3 2 15 15 O 1.21922 * 120.00158 * 359.97438 * 14 13 3 16 16 N 1.33374 * 119.99830 * 180.02562 * 14 13 3 17 17 C 1.33829 * 119.99898 * 235.38043 * 16 14 13 18 18 C 1.40917 * 120.41468 * 185.00808 * 17 16 14 19 19 C 1.36751 * 117.83739 * 179.77999 * 18 17 16 20 20 C 1.50697 * 120.76049 * 180.23541 * 19 18 17 21 21 C 1.40313 * 118.47722 * 0.47540 * 19 18 17 22 22 C 1.50695 * 119.68324 * 179.74166 * 21 19 18 23 23 N 1.30465 * 120.62342 * 359.75752 * 21 19 18 24 24 N 1.28413 * 122.43883 * 0.02562 * 23 21 19 25 25 H 0.97000 * 119.28074 * 179.97438 * 24 23 21 26 26 H 1.09003 * 109.47414 * 299.99927 * 1 2 3 27 27 H 1.09004 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47374 * 60.00115 * 1 2 3 29 29 H 1.09003 * 109.47137 * 119.99423 * 2 1 3 30 30 H 1.08993 * 109.47425 * 240.00080 * 2 1 3 31 31 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99418 * 265.00456 * 13 3 2 33 33 H 1.08008 * 121.07757 * 0.02562 * 18 17 16 34 34 H 1.09003 * 109.47165 * 270.24397 * 20 19 18 35 35 H 1.08997 * 109.47324 * 30.24616 * 20 19 18 36 36 H 1.09005 * 109.46922 * 150.24163 * 20 19 18 37 37 H 1.09005 * 109.47261 * 270.01725 * 22 21 19 38 38 H 1.08999 * 109.47674 * 30.01920 * 22 21 19 39 39 H 1.09005 * 109.46979 * 150.02179 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8798 1.3358 9 14 3.0963 0.1100 2.5707 10 1 2.8747 -1.3261 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8092 2.6394 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3439 2.6317 -0.4295 16 7 0.0820 3.2602 -2.5068 17 6 -0.3274 4.5343 -2.4969 18 6 -0.8019 5.1403 -3.6774 19 6 -1.2112 6.4432 -3.6063 20 6 -1.7352 7.1542 -4.8273 21 6 -1.1272 7.1045 -2.3716 22 6 -1.5653 8.5423 -2.2637 23 7 -0.6731 6.4863 -1.3162 24 7 -0.2850 5.2627 -1.3484 25 1 0.0451 4.8481 -0.5359 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 5.8770 0.4819 2.1127 32 1 2.2718 2.1231 -1.9978 33 1 -0.8447 4.5923 -4.6071 34 1 -0.9084 7.6336 -5.3514 35 1 -2.2159 6.4337 -5.4890 36 1 -2.4604 7.9096 -4.5246 37 1 -0.7177 9.1967 -2.4677 38 1 -2.3566 8.7364 -2.9878 39 1 -1.9384 8.7339 -1.2576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354777165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:49 Heat of formation + Delta-G solvation = 23.368429 kcal Electronic energy + Delta-G solvation = -21657.963356 eV Core-core repulsion = 18408.225185 eV Total energy + Delta-G solvation = -3249.738170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.96863 -40.87790 -37.67390 -36.59811 -35.89039 -34.44722 -33.47287 -32.31207 -29.93204 -29.59119 -28.52616 -24.99386 -24.46421 -24.01206 -22.42510 -21.34366 -20.14393 -20.00565 -18.51940 -17.72380 -17.44843 -17.01210 -16.73005 -16.09571 -15.43746 -15.38865 -15.15758 -14.60709 -14.49643 -14.24345 -13.99840 -13.85869 -13.80250 -13.67501 -13.27257 -13.05887 -12.84286 -12.50098 -12.42609 -12.40315 -12.18502 -11.90564 -11.53033 -11.32700 -11.31751 -10.97188 -10.91425 -10.42524 -9.86689 -9.06006 -8.43708 -6.50198 -0.57588 0.19162 1.23139 1.30053 1.30830 1.41265 1.78952 2.14809 2.21344 2.55676 2.91351 3.16380 3.48282 3.57599 3.80893 4.15450 4.22821 4.29962 4.44778 4.47864 4.59399 4.71888 4.75627 4.80788 4.89958 4.94276 5.01426 5.03352 5.16973 5.19404 5.22259 5.29385 5.33023 5.44159 5.57930 5.62678 6.09618 6.43156 6.51750 6.83409 6.99777 7.14287 7.62453 8.71752 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.004119 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.008396 B = 6795.856509 C = 7038.667690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 C 0.259 3.741 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.051 0.949 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.696 5.696 14 C 0.660 3.340 15 O -0.639 6.639 16 N -0.664 5.664 17 C 0.416 3.584 18 C -0.135 4.135 19 C -0.016 4.016 20 C -0.118 4.118 21 C 0.073 3.927 22 C -0.092 4.092 23 N -0.257 5.257 24 N -0.452 5.452 25 H 0.437 0.563 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.272 0.728 32 H 0.400 0.600 33 H 0.188 0.812 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 17.081 -13.569 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.175 4.175 3 C 0.154 3.846 4 H 0.041 0.959 5 C -0.576 4.576 6 H 0.069 0.931 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.766 3.234 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.345 5.345 14 C 0.360 3.640 15 O -0.522 6.522 16 N -0.418 5.418 17 C 0.159 3.841 18 C -0.165 4.165 19 C -0.024 4.024 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.150 4.150 23 N -0.079 5.079 24 N -0.179 5.179 25 H 0.281 0.719 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.205 0.795 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.768 16.443 -12.316 26.518 hybrid contribution 0.724 -1.263 0.974 1.752 sum -16.044 15.180 -11.342 24.829 Atomic orbital electron populations 1.21706 0.95375 1.00345 1.01233 1.22213 0.95721 0.98615 1.00963 1.18783 0.93296 0.89563 0.82989 0.95856 1.21221 0.90066 1.39140 1.07128 0.93056 1.25540 0.95848 0.95607 0.99761 1.69974 1.10220 1.45880 1.30910 0.85995 0.79162 0.80006 0.78280 1.18359 1.21408 1.18699 1.45628 1.13944 1.57870 1.17088 1.17485 0.82209 0.80965 0.83311 1.90903 1.52047 1.67157 1.42088 1.69081 1.37711 1.08568 1.26430 1.21038 0.87165 0.87794 0.88117 1.21460 1.02744 0.95743 0.96509 1.21379 0.91133 0.92505 0.97432 1.21159 1.02979 1.01423 0.91829 1.22765 0.99050 1.00097 0.88091 1.20884 1.03721 0.85031 1.05345 1.71031 1.10338 0.95323 1.31173 1.44266 1.52952 1.08042 1.12626 0.71859 0.94361 0.92146 0.93707 0.93309 0.91744 0.91861 0.76592 0.79524 0.87378 0.88856 0.87382 0.88121 0.86141 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.14 -6.56 5.11 30.59 0.16 -6.40 16 3 C 0.26 13.51 1.83 44.25 0.08 13.59 16 4 H 0.02 1.33 6.63 -2.38 -0.02 1.32 16 5 C -0.54 -31.38 9.31 25.60 0.24 -31.14 16 6 H 0.05 3.21 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.92 5.45 84.65 0.46 2.38 16 8 N -0.93 -57.62 13.96 21.45 0.30 -57.32 16 9 Si 0.94 46.63 24.41 68.60 1.67 48.31 16 10 H -0.26 -12.07 6.83 99.48 0.68 -11.39 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.26 -13.04 6.53 99.48 0.65 -12.39 16 13 N -0.70 -32.71 5.03 -462.20 -2.32 -35.03 16 14 C 0.66 29.94 5.68 179.49 1.02 30.96 16 15 O -0.64 -31.78 12.96 -5.06 -0.07 -31.84 16 16 N -0.66 -25.78 10.50 -323.72 -3.40 -29.18 16 17 C 0.42 13.11 7.37 134.04 0.99 14.10 16 18 C -0.14 -2.74 9.81 22.58 0.22 -2.51 16 19 C -0.02 -0.20 5.91 -19.71 -0.12 -0.32 16 20 C -0.12 -0.28 9.66 71.23 0.69 0.41 16 21 C 0.07 1.18 6.87 43.26 0.30 1.48 16 22 C -0.09 -0.59 9.80 71.23 0.70 0.10 16 23 N -0.26 -6.58 11.33 -47.29 -0.54 -7.12 16 24 N -0.45 -14.44 6.01 -55.29 -0.33 -14.77 16 25 H 0.44 16.28 6.75 -220.02 -1.49 14.80 16 26 H 0.04 1.76 7.84 -2.39 -0.02 1.75 16 27 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 28 H 0.04 2.06 5.64 -2.39 -0.01 2.05 16 29 H 0.05 2.37 3.22 -2.39 -0.01 2.36 16 30 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.40 17.88 8.64 -92.71 -0.80 17.08 16 33 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.09 0.10 8.10 -2.39 -0.02 0.08 16 36 H 0.11 -0.22 6.06 -2.38 -0.01 -0.24 16 37 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.12 -0.04 6.04 -2.39 -0.01 -0.06 16 39 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -79.43 313.96 -0.60 -80.04 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -1.27 Total: 29.40 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.35 Total: 17.52 kcal Atomic # 7 Polarization: -137.13 SS G_CDS: -6.29 Total: -143.42 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.07 Total: -31.84 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.67 Total: 48.31 kcal Total: -79.43 -0.60 -80.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354777165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.407 kcal (2) G-P(sol) polarization free energy of solvation -79.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds