Wall clock time and date at job start Tue Mar 31 2020 01:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 H 1.09003 * 109.46717 * 304.99788 * 3 2 1 5 5 C 1.50700 * 109.47173 * 184.99965 * 3 2 1 6 6 H 1.08002 * 120.00069 * 240.00120 * 5 3 2 7 7 C 1.37879 * 119.99871 * 59.99460 * 5 3 2 8 8 N 1.31513 * 120.00349 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47107 * 90.00369 * 9 7 5 11 11 H 1.48500 * 109.47136 * 210.00009 * 9 7 5 12 12 H 1.48497 * 109.47124 * 330.00285 * 9 7 5 13 13 N 1.46500 * 109.47352 * 64.99940 * 3 2 1 14 14 C 1.34783 * 119.99721 * 274.99793 * 13 3 2 15 15 O 1.21912 * 120.00005 * 0.02562 * 14 13 3 16 16 N 1.33370 * 119.99563 * 179.97438 * 14 13 3 17 17 C 1.33831 * 119.99699 * 127.81964 * 16 14 13 18 18 C 1.40913 * 120.41416 * 174.10972 * 17 16 14 19 19 C 1.36753 * 117.83631 * 180.02562 * 18 17 16 20 20 C 1.50695 * 120.76397 * 180.02562 * 19 18 17 21 21 C 1.40314 * 118.47705 * 359.97438 * 19 18 17 22 22 C 1.50711 * 119.68529 * 179.97438 * 21 19 18 23 23 N 1.30463 * 120.62807 * 0.02562 * 21 19 18 24 24 N 1.28426 * 122.43236 * 0.02562 * 23 21 19 25 25 H 0.96998 * 119.26881 * 179.97438 * 24 23 21 26 26 H 1.08995 * 109.47146 * 60.00684 * 1 2 3 27 27 H 1.09005 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46978 * 300.00379 * 1 2 3 29 29 H 1.08999 * 109.47469 * 239.99425 * 2 1 3 30 30 H 1.09001 * 109.46863 * 119.99656 * 2 1 3 31 31 H 0.96995 * 120.00228 * 180.02562 * 8 7 5 32 32 H 0.96992 * 120.00173 * 95.00228 * 13 3 2 33 33 H 1.08000 * 121.08406 * 0.02562 * 18 17 16 34 34 H 1.09000 * 109.46831 * 269.97785 * 20 19 18 35 35 H 1.09002 * 109.46959 * 29.97193 * 20 19 18 36 36 H 1.08997 * 109.47778 * 149.97688 * 20 19 18 37 37 H 1.08997 * 109.46583 * 270.02299 * 22 21 19 38 38 H 1.08998 * 109.46531 * 30.02133 * 22 21 19 39 39 H 1.08999 * 109.46787 * 150.01970 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3810 10 1 6.5539 -0.3521 -0.7596 11 1 6.3836 0.9212 -2.8164 12 1 6.5575 2.0719 -0.6888 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3437 2.6318 0.4294 16 7 0.0821 3.2604 2.5066 17 6 -0.3879 4.5133 2.4890 18 6 -0.8788 5.1078 3.6685 19 6 -1.3469 6.3903 3.5902 20 6 -1.8863 7.0899 4.8111 21 6 -1.3123 7.0404 2.3472 22 6 -1.8218 8.4539 2.2298 23 7 -0.8443 6.4325 1.2920 24 7 -0.3985 5.2287 1.3316 25 1 -0.0612 4.8209 0.5187 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0612 -2.9498 32 1 2.2718 2.1232 1.9977 33 1 -0.8852 4.5681 4.6040 34 1 -2.9569 6.9027 4.8937 35 1 -1.3816 6.7108 5.6997 36 1 -1.7106 8.1620 4.7230 37 1 -2.8848 8.4381 1.9893 38 1 -1.6709 8.9741 3.1756 39 1 -1.2780 8.9715 1.4395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354777179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:54 Heat of formation + Delta-G solvation = 43.002927 kcal Electronic energy + Delta-G solvation = -21565.779006 eV Core-core repulsion = 18316.892252 eV Total energy + Delta-G solvation = -3248.886755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84120 -39.12807 -36.06734 -35.31293 -34.40314 -32.36016 -31.71222 -30.57002 -29.14464 -27.94877 -26.70724 -23.77414 -23.29113 -22.59736 -20.46639 -19.32251 -19.05622 -18.30241 -16.65637 -16.07652 -15.85944 -15.41870 -14.75099 -14.63029 -14.36965 -13.86685 -13.81949 -13.47082 -13.25754 -13.21157 -12.66303 -12.55838 -12.24335 -12.00964 -11.49873 -11.28192 -11.21131 -10.97054 -10.93213 -10.77751 -10.33181 -10.20151 -10.11669 -10.03133 -9.52484 -9.01616 -8.79449 -8.47325 -7.92741 -7.63995 -6.10376 -4.19703 0.41106 1.26478 2.53416 3.03122 3.25548 3.31934 3.34327 3.65268 4.08009 4.10977 4.33348 4.40721 4.45962 4.71981 5.08790 5.15386 5.20754 5.27839 5.33455 5.44130 5.57186 5.61773 5.84149 5.96180 5.96881 6.47390 6.56288 6.60620 6.77472 7.13982 7.26557 7.44094 7.52359 7.66695 7.75745 7.92349 7.94931 8.04537 8.23011 8.77092 8.83395 9.35690 9.51831 10.94975 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.003986 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.452825 B = 7022.403427 C = 7440.673908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.277 3.723 4 H 0.047 0.953 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.695 5.695 14 C 0.649 3.351 15 O -0.608 6.608 16 N -0.626 5.626 17 C 0.417 3.583 18 C -0.114 4.114 19 C -0.047 4.047 20 C -0.117 4.117 21 C 0.054 3.946 22 C -0.088 4.088 23 N -0.217 5.217 24 N -0.438 5.438 25 H 0.451 0.549 26 H 0.048 0.952 27 H 0.021 0.979 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 15.782 12.995 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.344 5.344 14 C 0.348 3.652 15 O -0.489 6.489 16 N -0.375 5.375 17 C 0.155 3.845 18 C -0.143 4.143 19 C -0.056 4.056 20 C -0.174 4.174 21 C -0.120 4.120 22 C -0.147 4.147 23 N -0.039 5.039 24 N -0.171 5.171 25 H 0.300 0.700 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.223 0.777 33 H 0.183 0.817 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.675 15.017 11.617 21.308 hybrid contribution 1.378 -0.586 0.007 1.497 sum -8.297 14.431 11.624 20.303 Atomic orbital electron populations 1.21816 0.98280 0.97850 1.01335 1.21931 0.92725 0.99787 1.02182 1.18775 0.94067 0.89257 0.80449 0.93477 1.21234 0.90664 1.39067 1.06262 0.92121 1.24883 0.98634 0.94792 0.95339 1.69901 1.35103 1.37582 1.09350 0.86444 0.84837 0.78474 0.77324 1.20489 1.21054 1.19903 1.46097 1.12845 1.56958 1.18471 1.17302 0.83409 0.81528 0.82934 1.90950 1.51309 1.66141 1.40528 1.69255 1.31635 1.07511 1.29125 1.20396 0.88631 0.88842 0.86630 1.21121 1.01161 0.94536 0.97524 1.20773 0.94792 0.93785 0.96234 1.20909 1.01809 1.00764 0.93888 1.21678 1.03095 0.98814 0.88440 1.20576 1.01631 0.88675 1.03776 1.70879 1.06882 0.96756 1.29380 1.44309 1.51178 1.08668 1.12977 0.69988 0.93323 0.96007 0.94092 0.88333 0.95042 0.92571 0.77703 0.81697 0.89698 0.90305 0.90034 0.90175 0.89850 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.51 37.16 0.32 -3.01 16 2 C -0.13 -3.32 5.45 -26.73 -0.15 -3.47 16 3 C 0.28 7.39 2.24 -69.08 -0.15 7.24 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.68 8.73 -34.44 -0.30 -14.98 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 13 N -0.70 -16.30 5.03 -60.11 -0.30 -16.60 16 14 C 0.65 14.83 5.80 -88.16 -0.51 14.32 16 15 O -0.61 -15.35 12.74 5.00 0.06 -15.29 16 16 N -0.63 -12.26 10.50 -16.09 -0.17 -12.43 16 17 C 0.42 6.76 7.36 -155.89 -1.15 5.61 16 18 C -0.11 -1.31 9.81 -39.11 -0.38 -1.69 16 19 C -0.05 -0.42 5.91 -104.38 -0.62 -1.03 16 20 C -0.12 -0.52 9.66 36.00 0.35 -0.17 16 21 C 0.05 0.54 6.87 -82.39 -0.57 -0.03 16 22 C -0.09 -0.51 9.80 36.01 0.35 -0.16 16 23 N -0.22 -2.94 11.33 33.71 0.38 -2.56 16 24 N -0.44 -7.09 5.99 31.17 0.19 -6.90 16 25 H 0.45 8.27 6.66 -190.47 -1.27 7.00 16 26 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 1.02 5.64 -51.93 -0.29 0.73 16 29 H 0.10 2.78 5.95 -51.93 -0.31 2.47 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.39 8.49 8.64 -40.82 -0.35 8.13 16 33 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 36 H 0.08 0.23 6.06 -51.93 -0.31 -0.09 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.27 6.03 -51.93 -0.31 -0.04 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -33.50 320.50 -8.46 -41.95 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.15 Total: 11.21 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -2.90 Total: 4.36 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: 0.72 Total: -63.15 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.06 Total: -15.29 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.50 -8.46 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354777179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.957 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds