Wall clock time and date at job start Tue Mar 31 2020 01:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 H 1.09003 * 109.46717 * 304.99788 * 3 2 1 5 5 C 1.50700 * 109.47173 * 184.99965 * 3 2 1 6 6 H 1.08002 * 120.00069 * 240.00120 * 5 3 2 7 7 C 1.37879 * 119.99871 * 59.99460 * 5 3 2 8 8 N 1.31513 * 120.00349 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47107 * 90.00369 * 9 7 5 11 11 H 1.48500 * 109.47136 * 210.00009 * 9 7 5 12 12 H 1.48497 * 109.47124 * 330.00285 * 9 7 5 13 13 N 1.46500 * 109.47352 * 64.99940 * 3 2 1 14 14 C 1.34783 * 119.99721 * 274.99793 * 13 3 2 15 15 O 1.21912 * 120.00005 * 0.02562 * 14 13 3 16 16 N 1.33370 * 119.99563 * 179.97438 * 14 13 3 17 17 C 1.33831 * 119.99699 * 127.81964 * 16 14 13 18 18 C 1.40913 * 120.41416 * 174.10972 * 17 16 14 19 19 C 1.36753 * 117.83631 * 180.02562 * 18 17 16 20 20 C 1.50695 * 120.76397 * 180.02562 * 19 18 17 21 21 C 1.40314 * 118.47705 * 359.97438 * 19 18 17 22 22 C 1.50711 * 119.68529 * 179.97438 * 21 19 18 23 23 N 1.30463 * 120.62807 * 0.02562 * 21 19 18 24 24 N 1.28426 * 122.43236 * 0.02562 * 23 21 19 25 25 H 0.96998 * 119.26881 * 179.97438 * 24 23 21 26 26 H 1.08995 * 109.47146 * 60.00684 * 1 2 3 27 27 H 1.09005 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46978 * 300.00379 * 1 2 3 29 29 H 1.08999 * 109.47469 * 239.99425 * 2 1 3 30 30 H 1.09001 * 109.46863 * 119.99656 * 2 1 3 31 31 H 0.96995 * 120.00228 * 180.02562 * 8 7 5 32 32 H 0.96992 * 120.00173 * 95.00228 * 13 3 2 33 33 H 1.08000 * 121.08406 * 0.02562 * 18 17 16 34 34 H 1.09000 * 109.46831 * 269.97785 * 20 19 18 35 35 H 1.09002 * 109.46959 * 29.97193 * 20 19 18 36 36 H 1.08997 * 109.47778 * 149.97688 * 20 19 18 37 37 H 1.08997 * 109.46583 * 270.02299 * 22 21 19 38 38 H 1.08998 * 109.46531 * 30.02133 * 22 21 19 39 39 H 1.08999 * 109.46787 * 150.01970 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8799 -1.3810 10 1 6.5539 -0.3521 -0.7596 11 1 6.3836 0.9212 -2.8164 12 1 6.5575 2.0719 -0.6888 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3437 2.6318 0.4294 16 7 0.0821 3.2604 2.5066 17 6 -0.3879 4.5133 2.4890 18 6 -0.8788 5.1078 3.6685 19 6 -1.3469 6.3903 3.5902 20 6 -1.8863 7.0899 4.8111 21 6 -1.3123 7.0404 2.3472 22 6 -1.8218 8.4539 2.2298 23 7 -0.8443 6.4325 1.2920 24 7 -0.3985 5.2287 1.3316 25 1 -0.0612 4.8209 0.5187 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0612 -2.9498 32 1 2.2718 2.1232 1.9977 33 1 -0.8852 4.5681 4.6040 34 1 -2.9569 6.9027 4.8937 35 1 -1.3816 6.7108 5.6997 36 1 -1.7106 8.1620 4.7230 37 1 -2.8848 8.4381 1.9893 38 1 -1.6709 8.9741 3.1756 39 1 -1.2780 8.9715 1.4395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354777179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:54 Heat of formation + Delta-G solvation = 17.454630 kcal Electronic energy + Delta-G solvation = -21566.886864 eV Core-core repulsion = 18316.892252 eV Total energy + Delta-G solvation = -3249.994612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.94878 -40.77151 -37.50892 -36.55038 -35.84716 -34.33082 -33.16130 -32.18247 -29.90037 -29.26146 -28.35272 -25.25237 -24.49722 -23.95434 -22.13922 -21.21616 -20.11115 -19.87694 -18.25629 -17.54477 -17.35521 -16.83488 -16.58615 -16.22207 -15.41841 -15.26348 -14.70160 -14.57309 -14.41064 -14.26485 -13.91119 -13.69521 -13.56342 -13.28110 -13.21426 -12.99962 -12.72183 -12.53075 -12.30603 -12.24134 -12.16048 -12.07953 -11.66128 -11.39912 -11.12022 -10.96525 -10.60262 -10.36814 -9.73276 -9.03383 -8.20834 -6.39109 -0.56550 0.19737 1.33513 1.40872 1.42175 1.52793 1.86104 2.19968 2.39710 2.66142 3.07921 3.18396 3.52632 3.59100 3.82681 4.38953 4.42083 4.48441 4.49931 4.60195 4.69124 4.72513 4.80853 4.93974 4.98420 5.02395 5.16493 5.19922 5.22285 5.29696 5.37418 5.49675 5.55820 5.62910 5.72388 5.87167 6.09592 6.47688 6.68840 6.92304 7.04332 7.29221 7.73543 8.84984 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.003986 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.452825 B = 7022.403427 C = 7440.673908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.287 3.713 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.975 3.025 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.699 5.699 14 C 0.655 3.345 15 O -0.646 6.646 16 N -0.664 5.664 17 C 0.414 3.586 18 C -0.135 4.135 19 C -0.016 4.016 20 C -0.117 4.117 21 C 0.071 3.929 22 C -0.091 4.091 23 N -0.258 5.258 24 N -0.451 5.451 25 H 0.436 0.564 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.397 0.603 33 H 0.187 0.813 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 18.430 15.677 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.183 3.817 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.799 3.201 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.191 1.191 13 N -0.348 5.348 14 C 0.356 3.644 15 O -0.529 6.529 16 N -0.418 5.418 17 C 0.157 3.843 18 C -0.164 4.164 19 C -0.025 4.025 20 C -0.173 4.173 21 C -0.101 4.101 22 C -0.149 4.149 23 N -0.079 5.079 24 N -0.179 5.179 25 H 0.281 0.719 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.205 0.795 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.186 17.758 14.344 24.997 hybrid contribution 1.302 -1.066 -0.724 1.832 sum -8.885 16.692 13.620 23.304 Atomic orbital electron populations 1.21625 0.97182 0.98916 0.99897 1.21797 0.93598 0.99345 1.01189 1.18375 0.93762 0.89043 0.80491 0.98214 1.21517 0.91118 1.39527 1.06878 0.91549 1.25795 1.03684 0.94083 0.94735 1.70045 1.37202 1.38030 1.09831 0.85309 0.78567 0.78872 0.77353 1.19522 1.20717 1.19107 1.45858 1.13630 1.57728 1.17606 1.17540 0.82544 0.81098 0.83256 1.90894 1.52214 1.67374 1.42458 1.69144 1.36547 1.09449 1.26695 1.21086 0.87171 0.88048 0.88011 1.21459 1.02389 0.95966 0.96621 1.21382 0.91239 0.92389 0.97466 1.21156 1.02772 1.01766 0.91634 1.22785 0.99132 1.00169 0.88063 1.20882 1.02398 0.85663 1.05968 1.71034 1.09575 0.95934 1.31382 1.44301 1.51516 1.09753 1.12309 0.71859 0.95444 0.93474 0.94771 0.90464 0.94536 0.92389 0.76893 0.79530 0.87537 0.88768 0.87277 0.88250 0.86046 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.51 71.98 0.61 -5.47 16 2 C -0.12 -6.55 5.45 30.59 0.17 -6.39 16 3 C 0.29 16.21 2.24 44.24 0.10 16.30 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -31.36 8.73 25.60 0.22 -31.14 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.98 5.29 84.66 0.45 1.42 16 8 N -0.91 -54.03 11.29 21.45 0.24 -53.79 16 9 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.70 -34.65 5.03 -462.23 -2.32 -36.98 16 14 C 0.66 31.82 5.80 179.49 1.04 32.86 16 15 O -0.65 -34.95 12.74 -5.03 -0.06 -35.02 16 16 N -0.66 -27.20 10.50 -323.73 -3.40 -30.60 16 17 C 0.41 13.76 7.36 134.04 0.99 14.74 16 18 C -0.13 -2.89 9.81 22.58 0.22 -2.67 16 19 C -0.02 -0.22 5.91 -19.71 -0.12 -0.34 16 20 C -0.12 -0.35 9.66 71.23 0.69 0.34 16 21 C 0.07 1.23 6.87 43.27 0.30 1.53 16 22 C -0.09 -0.65 9.80 71.24 0.70 0.05 16 23 N -0.26 -6.95 11.33 -47.28 -0.54 -7.49 16 24 N -0.45 -15.28 5.99 -55.29 -0.33 -15.61 16 25 H 0.44 17.42 6.66 -220.02 -1.47 15.95 16 26 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 27 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.03 1.77 5.64 -2.39 -0.01 1.75 16 29 H 0.08 4.55 5.95 -2.39 -0.01 4.53 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.40 18.12 8.64 -92.71 -0.80 17.32 16 33 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.09 0.14 8.10 -2.39 -0.02 0.12 16 36 H 0.11 -0.18 6.06 -2.39 -0.01 -0.20 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.12 0.01 6.03 -2.39 -0.01 0.00 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -79.03 320.50 -0.19 -79.22 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.17 Total: 33.25 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 5.37 Total: 21.25 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -6.35 Total: -144.47 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.03 -0.19 -79.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354777179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.674 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds